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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015203 ID=TCONS_00015203|Name=TCONS_00015203|organism=Clytia hemisphaerica|type=transcript|length=2095bp
tctttgaaaaagaaaattgatcaTATTTTATTCTTTGATTATCTTCAGag
attatattgaaaaaaaattagttaaatatataaaatttttggaGTTTTTG
ATGTTTTACGAAGAAATCAATCATATGTAATGTaaaTGGAATGGTTAGTC
CCTCATATAGCACGTATAGATAATTTCTGCAACAAACTTGAAACCGGGCA
GAAAACATATCTCAACATTTCCCGTGACCGCGCCACATACTACGAACAAC
GAGCTCAATTATCACGTGATTATTTACATCGCTTAAGAGAATCTTCCGAT
ACCGACGAGAATAACAACATGAGAGAAATCGAAGAAGTCGATGTTTTGAA
AACATCTGATGATGGCGGTTCCGCATTCGAAATGAGTCCCTCCCAGGAAA
ATAGTTTTGGGTCGTCACATTCTGGTAGAACGTCACCCGAGATTGATCTT
CAAGGTCAAATAAAGAGATATAATGAAATAATGCAAGCTAAAGCAAAGAC
ATTACCTGTTTCTGTCATTGTTTCCGATCACACGTTCACCAGCTCTGCAC
CCTCACCTACGTCCAGTATCACAGGAAGTGAAAGTTCACGCCTTGAGGGC
GATATGAATAATATCGGACGCCCCAAATCATACAATTACAAACCCGCCCC
AATGGTACGGAAATCGGAACGTCGTTTTATAAATGCGGAACAGAAGGATC
AAAGTTATTGGGAAAGGCGTAAACGTAATAACGCGGCGGCCAAAAAATCC
CGCGAGTCACGCCGCGAGAAAGAAATCGAGGTTAGCCGACGTTGTGACGC
TTTAGTCAAAGAAAACGAAGGTATGAAATTTACTATCATGAACCTACAAG
AACGTAATACACAAATGGAAAATACCATGAAAATCTACAAAGACATTTta
gtcaaaaataatttgatttgatttgatttttttcaaatttgttggTCTCA
TTTATACAACCCATTTCAATGTATGAGAACTTGTATAATATGACATGAAT
GATCGAGGCAAGAGGAGGTGATGACATTTAATCGAGACAAAATACTTTGT
GAATTTTGACCAATACCACAAACATTGAGAAGTATATGTCATAAATTACC
GTGTCCCAACTGTTTATCAGACTTTGAGGGCGGGGAATCGCCATTCTTCA
ACAACGCCCGTATGAACAGGATCATGGAGGCCGCCCCCTGATAAACAACA
CTATTTCATGTCACACAAATATCGCTATCAATCCCCGGGGctaatatcaa
aatatcatcGACGTTTTCTTTTGGATGTTATAAATATTTAGACAATCAAA
CACAAAGACAATGGATAAAGCCAAGGGACGAGGTTGAGCAAATAAATGAT
ATTTGTTAGTTTGTGCAGAAAAGGAAGTaaccaaaacatttaaaactgAC
AGCGCATTCTCAGCCGCAAGACAAAAAAAACCCTgattggaaaagaaaaa
taaatatttgggCCCTGTAAATATTATATCCAAATTTTTATTAGTATTGA
CGATAATTTTCTTAGTGTTTTACTTTACTTTATAGGACTGGTTCATCTAT
TAGATGAGAAGTAATATTTCCATTCAAGGGGAAAAATCTACGAGATCTGC
CAGTCTCCTTTAACCTTTTTCTGTTACAAACCCTGAAAAAAAtcttaaac
acccctgtgtcacttCCACCGAAAGATTTGACAAATATTATTTTCGTCCC
CGATGGGGAAATTTCTATCCCTattgggattttgatagaaatctTTATAC
CTCAGCCAGAtctatgagacaggggtgttccaCCAGgtttgtgagacagg
ggtgttccaCCAGGtttatgagacaggggtgttccaccagggctatgaga
caggggtgttcttcACTTCACTGTTGtttcttttttcgaaattaTCTTTT
GTTGAtattgtaaattattttgaacatTATATCAGTATTTTAAAGGTATT
ATTTTAAGTGCTATTTGCTCACGAAAGTCTTTAATAAGAATAAAacagaa
attcttttaaataattgaagaaaaaaaaaccgtaAATCTTTTTAAGGTTC
TGGACCTCCTTGAATTAAGGCTGAATTCTCATTTGGTATTATCGA Run BLAST on NCBI transcript from alignment at sc0000205:278026..282817+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015203 ID=TCONS_00015203|Name=TCONS_00015203|organism=Clytia hemisphaerica|type=transcript|length=4792bp|location=Sequence derived from alignment at sc0000205:278026..282817+ (Clytia hemisphaerica)
tctttgaaaaagaaaattgatcaTATTTTATTCTTTGATTATCTTCAGag
attatattgaaaaaaaattagttaaatatataaaatttttggaGTTTTTG
ATGTTTTACGAAGAAATCAATCATATGTAATGTGTAAGTAAATTTTTGTT
CTTCCTAATCAGAataaattacatttttttttatataagaacattcaaaa
tcttATGCCTAAATAttatcttaaaatgttcttattttcaccattttatg
agtattgtTGTGCGATTTTCTAAAAAGAATTGGGTGTTTTACGTtctgcg
aagccttaaaatgttcttaataaactttttcttaaaatttcggcCATcca
aaccttatgttcttacatgatttgttcttacaaaaaaacgtatatttaaa
aaaaacagagGTGTAATTACaggttttcttataaaaaatttacaCTCTAA
CTGAGTGTGAGCAAacccaacttttttttatgagaacaacgaggctcaaa
atcaataaaaaataagaacaattaaaaaaataacattcGGAGCTTGGAAT
TGCTTAATTTCAACAGGAGTTTTACGGATCATATATGTATAATCCGTTAT
AAAGCTtaaaaatacatctttttggGACTTcgctggaggtcctataaatt
aaccgatgttcgTCCATCATCTTGCGATTggcttattagttttttctaat
ttttcttaaaattcggtCATTCCAGACTAAAACTTCATATATACATATTC
TCTGACCTGCTCATTGCTTCTATAAAACCAAATCTTTTTTCGGTATAGGA
GTCTATAAATTTGAATATAGGAATTAAGAGAATCTTTGAACCCTTATCGG
GACATTTTACTGACATTTAGCATtatcaatgacaaaaatttatGCCTTTT
GGAAGTTTTCTTtttggcattcttagcttgagtagcaaaattccatgatc
gtgatattcttagcatattcttaattttttggccattttcatcatggaca
ttcttataaagtgtattcttattaaaaaaaagcatgtatatACCCGTAAT
CCATCCATGTGCCTGGGTACCCCCAGCCCCGGTTATATGTAATGATAACT
ATTTTCTCACGTGtgaattgaatttttgaaatctgtCTTCACAGATCAGA
TTTCTGTTTCGGCCTGTGCATCTCGTCTGTAGCACGTTTAATGGTGTAAT
ATCTCGTGAAATTAATGATATAGAAATGAGTATAAACATAAGTCCTGAGA
AGGACGAAACACCTGTCTGCGGATAAATATCCTTATATGATATTCGAAAT
AATATCTGGTATTTAGATTAGACACACgcaagctggcacacaacgctgtt
ttaacgtttttataacattcacaacgtccatataacgttagataaacgtt
gaaatgttgtgtgccagttgggaaAGGAGTACAAGTATTTgagtagaaat
atttttgtgtctGTATCCTTAAGCGATACGAAACTGTAatgtctgaacat
ggtctaaataaACCCCTGGAATGGGGTTGTTTATAATCGGTGTAATACAG
TTATATAAGGCTGTTATATGATAACATGATAATTGTTACGTTATAATCCG
TGTAATACAGTTATAAGGCTGTTATATGATAACATGATAATTGTTACGTT
TATAATCCGTGTAATACAGTTATAAGGCTGTTATATGATAACATGATAAT
TGTTACgagataatatcagtttgtaaaaactgaaaaaaaattaagaaatt
acgattttacattttattttttacttattttctaCTATGTTTGAATTAGT
CCTCCTAGCTTGCAAGACTACTaaatttgtgaaattttgcGAATCTTCAA
ACACAATAGTTATGTCATCATCGTATAAACACATTATTgtggcttaaaac
ttaaaaagttaagaacatccgaaagcttcaaaaatttcttatgttaaaaa
cgtttataaaaaaacttttattatctGATTCTTGTTTTGTATGTATTTCT
TTGAATGAAGAATGCAGTATTGACACTTTCTGAATAGTGAGGATTCTCAA
GGCTGAATAATGGTGATGAACAAATTGCATAACTTGTTctgattcttttt
ttttgaaacattcaTTTATTTAAAGAAAGTTATTTTATTTCGAACTTTTC
TGGTGTAGTGCAATGATTCGACTATGATTGATTTTTGATTCCTTTGTTCG
CTAGTAGACGAAGTTATcttccgttacagtgatagtataAAGGtcgaaaa
aaaggaagaaattttggcgggaatttaatttggcggatggccggaAAAGT
CTTTTAGAGTGAATTTAACTTGGCAGATgaacgaaaaaactaaatttggc
gggaattcaattttgcgtttgctgaaaaatttatccttaaaatggcgtaa
aaacagcacaaaaaaatgcaaaataaccttatagagatcatattttcaaa
aaacacttctggccaaatccgccaaattttcttccgccaaaatttctacC
TTTAAGGTATGGAGACGGATTTAGAGGGTGTTGCTAACTGGAGGGACAAT
AAAAATTGAGGCTCGAGTACTAGAGACTCCAGTGTATTGATATattcttt
atttcttcttttagaaaTGGAATGGTTAGTCCCTCATATAGCACGTATAG
ATAATTTCTGCAACAAACTTGAAACCGGGCAGAAAACATATCTCAACATT
TCCCGTGACCGCGCCACATACTACGAACAACGAGCTCAATTATCACGTGA
TTATTTACATCGCTTAAGAGAATCTTCCGATACCGACGAGAATAACAACA
TGAGAGAAATCGAAGAAGTCGATGTTTTGAAAACATCTGATGATGGCGGT
TCCGCATTCGAAATGAGTCCCTCCCAGGAAAATAGTTTTGGGTCGTCACA
TTCTGGTAGAACGTCACCCGAGATTGATCTTCAAGGTCAAATAAAGAGAT
ATAATGAAATAATGCAAGCTAAAGCAAAGACATTACCTGTTTCTGTCATT
GTTTCCGATCACACGTTCACCAGCTCTGCACCCTCACCTACGTCCAGTAT
CACAGGAAGTGAAAGTTCACGCCTTGAGGGCGATATGAATAATATCGGAC
GCCCCAAATCATACAATTACAAACCCGCCCCAATGGTACGGAAATCGGAA
CGTCGTTTTATAAATGCGGAACAGAAGGATCAAAGTTATTGGGAAAGGCG
TAAACGTAATAACGCGGCGGCCAAAAAATCCCGCGAGTCACGCCGCGAGA
AAGAAATCGAGGTTAGCCGACGTTGTGACGCTTTAGTCAAAGAAAACGAA
GGTATGAAATTTACTATCATGAACCTACAAGAACGTAATACACAAATGGA
AAATACCATGAAAATCTACAAAGACATTTtagtcaaaaataatttgattt
gatttgatttttttcaaatttgttggTCTCATTTATACAACCCATTTCAA
TGTATGAGAACTTGTATAATATGACATGAATGATCGAGGCAAGAGGAGGT
GATGACATTTAATCGAGACAAAATACTTTGTGAATTTTGACCAATACCAC
AAACATTGAGAAGTATATGTCATAAATTACCGTGTCCCAACTGTTTATCA
GACTTTGAGGGCGGGGAATCGCCATTCTTCAACAACGCCCGTATGAACAG
GATCATGGAGGCCGCCCCCTGATAAACAACACTATTTCATGTCACACAAA
TATCGCTATCAATCCCCGGGGctaatatcaaaatatcatcGACGTTTTCT
TTTGGATGTTATAAATATTTAGACAATCAAACACAAAGACAATGGATAAA
GCCAAGGGACGAGGTTGAGCAAATAAATGATATTTGTTAGTTTGTGCAGA
AAAGGAAGTaaccaaaacatttaaaactgACAGCGCATTCTCAGCCGCAA
GACAAAAAAAACCCTgattggaaaagaaaaataaatatttgggCCCTGTA
AATATTATATCCAAATTTTTATTAGTATTGACGATAATTTTCTTAGTGTT
TTACTTTACTTTATAGGACTGGTTCATCTATTAGATGAGAAGTAATATTT
CCATTCAAGGGGAAAAATCTACGAGATCTGCCAGTCTCCTTTAACCTTTT
TCTGTTACAAACCCTGAAAAAAAtcttaaacacccctgtgtcacttCCAC
CGAAAGATTTGACAAATATTATTTTCGTCCCCGATGGGGAAATTTCTATC
CCTattgggattttgatagaaatctTTATACCTCAGCCAGAtctatgaga
caggggtgttccaCCAGGtttatgagacaggggtgttccaCCAGAtctat
gagacaggggtgttccaccagggctatgagacaggggtgttccaCCAGGg
ttatgagacaggggtgttccaCCAGGtgtatgagacaggggtgctcCACC
AGgtttgtgagacaggggtgttccaCCAGGtgtatgagacaggggtgttc
caCCAGAtttatgagacaggggtgttccaTCAGGTTTATGAGGCAGGGGT
GTTCCACCAGGtttatgagacaggggtgttccaccagggctatgagacag
gggtgttcttcACTTCACTGTTGtttcttttttcgaaattaTCTTTTGTT
GAtattgtaaattattttgaacatTATATCAGTATTTTAAAGGTATTATT
TTAAGTGCTATTTGCTCACGAAAGTCTTTAATAAGAATAAAacagaaatt
cttttaaataattgaagaaaaaaaaaccgtaAATCTTTTTAAGGTTCTGG
ACCTCCTTGAATTAAGGCTGAATTCTCATTTGGTATTATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015203-exon-sc0000205-1491911889:278026..278158 | TCONS_00015203-exon-sc0000205-1491911889:278026..278158 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1510915933:278026..278158 | TCONS_00015203-exon-sc0000205-1510915933:278026..278158 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1575043694:278026..278158 | TCONS_00015203-exon-sc0000205-1575043694:278026..278158 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1491911889:280640..282292 | TCONS_00015203-exon-sc0000205-1491911889:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1510915933:280640..282292 | TCONS_00015203-exon-sc0000205-1510915933:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1575043694:280640..282292 | TCONS_00015203-exon-sc0000205-1575043694:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1491911889:282428..282454 | TCONS_00015203-exon-sc0000205-1491911889:282428..282454 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1510915933:282428..282454 | TCONS_00015203-exon-sc0000205-1510915933:282428..282454 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1575043694:282428..282454 | TCONS_00015203-exon-sc0000205-1575043694:282428..282454 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1491911889:282536..282817 | TCONS_00015203-exon-sc0000205-1491911889:282536..282817 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1510915933:282536..282817 | TCONS_00015203-exon-sc0000205-1510915933:282536..282817 | Clytia hemisphaerica | exon |
| TCONS_00015203-exon-sc0000205-1575043694:282536..282817 | TCONS_00015203-exon-sc0000205-1575043694:282536..282817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:278026..282817 + |
Blast
The following BLAST results are available for this feature:
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