TCONS_00015157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015157
Unique NameTCONS_00015157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015157 ID=TCONS_00015157|Name=TCONS_00015157|organism=Clytia hemisphaerica|type=transcript|length=549bp
ggatattttttccGGACATGTCCAGTTTTCAACTGTCCGAAAAAGTGGTT
TGTCCGGACTGATGGGGATTTTTTTGGTAACTCAGTATACCCTAAAGaac
atctgtgccaattttcagcttgatggcaATTTTGTCCGGGGTGTTGTGAA
ATTCCagctaattctacctgactattaGCAAAGTCACTCCATTCATAACA
AAATGACCGCTCAATGGACAATAAAAACTGAGAGATTGTACAACTGActt
ttttcaatagagatgaCTTGTTTATTCATCAAAACCATTTATTTTTTGAT
AGACAGCCATTTATTCGCACGCTAGAGGCGCGAGAATTATCAGGTACCTG
GGTTAAAGAGCGCGCTCCATTCTTCATTTTAAAGTTCAGGGATACAGACT
CTAGGTACACAAAAAAACCATAGAATTCATGCTTAAATTTGCAAGTTTTA
CAGATATAATGAGCTGCTCTATGATTGGTTCAATTACAATTCcaaattaa
tgatttttaagtataattttccacctaCGGTCAAATTGACCACTTGACG
Run BLAST on NCBI

transcript from alignment at sc0000204:218719..219267

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015157 ID=TCONS_00015157|Name=TCONS_00015157|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at sc0000204:218719..219267 (Clytia hemisphaerica)
CGTCAAGTGGTCAATTTGACCGtaggtggaaaattatacttaaaaatcat
taatttgGAATTGTAATTGAACCAATCATAGAGCAGCTCATTATATCTGT
AAAACTTGCAAATTTAAGCATGAATTCTATGGTTTTTTTGTGTACCTAGA
GTCTGTATCCCTGAACTTTAAAATGAAGAATGGAGCGCGCTCTTTAACCC
AGGTACCTGATAATTCTCGCGCCTCTAGCGTGCGAATAAATGGCTGTCTA
TCAAAAAATAAATGGTTTTGATGAATAAACAAGtcatctctattgaaaaa
agTCAGTTGTACAATCTCTCAGTTTTTATTGTCCATTGAGCGGTCATTTT
GTTATGAATGGAGTGACTTTGCtaatagtcaggtagaattagctGGAATT
TCACAACACCCCGGACAAAATtgccatcaagctgaaaattggcacagatg
ttCTTTAGGGTATACTGAGTTACCAAAAAAATCCCCATCAGTCCGGACAA
ACCACTTTTTCGGACAGTTGAAAACTGGACATGTCCggaaaaaatatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008485XLOC_008485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015157-exon-sc0000204-1491911889:218719..219267TCONS_00015157-exon-sc0000204-1491911889:218719..219267Clytia hemisphaericaexon
TCONS_00015157-exon-sc0000204-1510915933:218719..219267TCONS_00015157-exon-sc0000204-1510915933:218719..219267Clytia hemisphaericaexon
TCONS_00015157-exon-sc0000204-1575043694:218719..219267TCONS_00015157-exon-sc0000204-1575043694:218719..219267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:218719..219267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.354439	1.04029	0.282565	0.222393	0.670768	0.502372	0.0879306	0.108916	0.845734	0.0696797	0.342845	0.28828	0	0.0635857	0.157347	0.160576	0.11164	0	0.100888	0	0	0.108771	1.00829	1.3998	0	0	0.232341	0.117998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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