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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015136 ID=TCONS_00015136|Name=TCONS_00015136|organism=Clytia hemisphaerica|type=transcript|length=3886bpRun BLAST on NCBI protein sequence of TCONS_00015136-protein >TCONS_00015136-protein ID=TCONS_00015136-protein|Name=TCONS_00015136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MEQSLIFNVLSTLCFIAFIAICRILRSKDLVPDTELFYQSSSKFVKNILARun BLAST on NCBI transcript from alignment at sc0000204:237826..251526- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015136 ID=TCONS_00015136|Name=TCONS_00015136|organism=Clytia hemisphaerica|type=transcript|length=13701bp|location=Sequence derived from alignment at sc0000204:237826..251526- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000204:237826..251526- >TCONS_00015136 ID=TCONS_00015136|Name=TCONS_00015136|organism=Clytia hemisphaerica|type=CDS|length=9840bp|location=Sequence derived from alignment at sc0000204:237826..251526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015136 vs. Swiss-Prot (Human)
Match: ABHD2 (Monoacylglycerol lipase ABHD2 OS=Homo sapiens GN=ABHD2 PE=1 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 2.562e-71 Identity = 145/392 (36.99%), Postives = 226/392 (57.65%), Query Frame = 1
Query: 106 LSTLCFIAFIAI-CRILRSKDLVPDTELFYQSSSKFVKNILANSPTLQERYIPMFLWGKSGHIQSVLFSVVGRFGQKELVQKRRVEIPASDGLIISYDLFQKDPNIKGKHKDELILVV-PGICNTGDTDYVHEFSCFMNKSGYDVAVLNHTGALKNSKITQPRIFSYGKTDDLDVIVNDLFRKHRQKKLIGIGFSLGAQILMKYLGEKKQNQEKFSLAMSICQGYDLREACDLLQEWGNLRRFYNLIITKNMLKVISRHKTSFQKQHSENKR----LDWQRIESSKALHELDSEFTLKVFREKEKLYDWYWKESCSRNLNKIEIPVFMVNAKDDPLVPECLFRYPKSLVEHNKNCLFVVTEXXXXXXXXXXXXXRPNRVSWIDRVILEYLNG 1263
L+ + + ++ + C L+S PD L++Q S + +L + P L + YIP +WGKSGHIQ+ L+ +GR R+ I SDG ++DLF+ P + D++ +V+ PGI N + Y+ F + K+GY AVLNH GAL N ++T PR+F+YG T + +VN + + + +L+ +GFSLG I+ KYLGE + NQEK +S+CQGY A + +W RRFYN ++ NM K+I H+ + H + + D R+ ++ +L ++D ++ F L ++Y +ESC R L++I +P+ +VNA DDPLV E L PKSL E +N +FV+ GGHLGFFEG P ++W+D++++EY N
Sbjct: 19 LAAVAAVLYVIVRCLNLKSPTAPPD--LYFQDSG-LSRFLLKSCPLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKF-ITMSDGATSTFDLFE--PLAEHCVGDDITMVICPGIANHSEKQYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKKTYPLTQLVVVGFSLGGNIVCKYLGETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALFGDHVKKPQSLEDTDLSRLYTATSLMQIDDN-VMRKFHGYNSLKEYYEEESCMRYLHRIYVPLMLVNAADDPLVHESLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTWMDKLVVEYANA 403 The following BLAST results are available for this feature:
BLAST of TCONS_00015136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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