TCONS_00015133 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015133
Unique Name	TCONS_00015133
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1573

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000204:150750..153867-
coding sequence from alignment at sc0000204:150750..153867-

transcript sequence

>TCONS_00015133 ID=TCONS_00015133|Name=TCONS_00015133|organism=Clytia hemisphaerica|type=transcript|length=1573bp
GACAATTTGCCTCCAGCCAATTGGAAATCAGAGTTGCAAAAATTGCGCGT
AAACATAAATTATTTAAAAGCTCAACCAACATCATTCATTTCATTCAACC
TCTTCATCAGCAAGCAAACACAGGCAAGCCCAGCAACTTTGAAATTCGTT
TCGTTTTACTGAAATTCTCTTCATAAAATGGCTCTCGTCGACAGAACTAA
CGTGCTCAAGAACAAGGAAAACATCATGGTACCAAACTCCAACCAAATTG
GACTTGATTTGGAGAAAAAGATGCAAAAACCAATGGTCAGCGATGTTGCC
TCTATCATCGCAGCAaaacCAGCAAAGATTGACAAAGATGCACAAGAAGA
ACCTTTGTTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAAT
ATCCTGATATCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACT
GCTGAAGAAGTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACT
GAAACCTCAAGAGCGATACTTTATTTCACATGTATTAGCATTCTTTGCTG
CAAGTGATGGTATTGTTAATGAAAACCTGGTTGAATGTTTCAGCCAAGAA
GTCCAAATTCCAGAAGCCCGTGCATTTTATGGTTTCCAAATTGCAATCGA
AAACATCCACTCAGAAATGTACTCTTTATTGATTGAGACTTTGATTGAAG
ATCCAACTGAACGTGGAAATCTCTTTAATGCCATTGAAACCATGCCTTGC
ATTCAAAAGAAAGCTGTCTGGGCTTTGAAATGGATCAATAAAGAGCGAGC
ATCCTATGCTGAACGTATCATTGCATTTGCTGCAGTTGAGGGAATCTTCT
TCTCTGGTTCCTTTGCATCTATCTTTTGGTTGAAAAGCAGggGAGTCATG
CCTGGACTTACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTACA
CTGTGACTTTGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCAG
AAGAGAAAGTCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGAA
TTCTTGACCGAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGATT
AATGAAAACATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTG
GATGTTCAAAGaTTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAAC
ATTTCTTTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTA
CCAAAAGTCTGGTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTC
AGTTCGACGAACTAGATGATTTGGATTTCTAAATAGTTTTACAattggat
tttattttttgctttttttaattgtaatgtatattttatttaattttact
CAGGTCTTATATTTTATATCCTTTATCAGATGTACATAGATTGAATAACA
GAAATAGACATTTTACActgttcattttaatttcacgtCTCAAAATCACT
AACCTACAAAGAGATTCTATAATACCTTTGACCTGTCGAGAATTAGCTTG
ATTAGAACAACATTTATATCACC

Run BLAST on NCBI

protein sequence of TCONS_00015133-protein

>TCONS_00015133-protein ID=TCONS_00015133-protein|Name=TCONS_00015133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MALVDRTNVLKNKENIMVPNSNQIGLDLEKKMQKPMVSDVASIIAAKPAK
IDKDAQEEPLLRENPRRFVLFPIKYPDIWEMYKKAEASFWTAEEVDLAVD
VKHWQEKLKPQERYFISHVLAFFAASDGIVNENLVECFSQEVQIPEARAF
YGFQIAIENIHSEMYSLLIETLIEDPTERGNLFNAIETMPCIQKKAVWAL
KWINKERASYAERIIAFAAVEGIFFSGSFASIFWLKSRGVMPGLTFSNEL
ISRDEGLHCDFACLMFKHLVNKPSEEKVKEIILDAVRIEQEFLTESLPCD
LLGMNKGLMKTYIEFVADRLLLALGCSKIWHRENPFDFMENISLGRKANF
FESRVSDYQKSGVMESLNDTGKDLQFDELDDLDF

Run BLAST on NCBI

transcript from alignment at sc0000204:150750..153867-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015133 ID=TCONS_00015133|Name=TCONS_00015133|organism=Clytia hemisphaerica|type=transcript|length=3118bp|location=Sequence derived from alignment at sc0000204:150750..153867- (Clytia hemisphaerica)
GACAATTTGCCTCCAGCCAATTGGAAATCAGAGTTGCAAAAATTGCGCGT
AAACATAAATTATTTAAAAGCTCAACCAACATCATTCATTTCATTCAACC
TCTTCATCAGCAAGCAAACACAGGCAAGCCCAGCAACTTTGAAATTCGTT
TCGTTTTACTGAAATTCTCTTCATAAAATGGCTCTCGTCGACAGAACTAA
CGTGCTCAAGAACAAGGAAAACATCATGGTACCAAACTCCAACCAAATTG
GACTTGATTTGGAGAAAAAGATGCAAAAACCAATGGTCAGCGATGTTGCC
TCTATCATCGCAGCAGTAAGTTGTCTATTAAATCCCTTTTCCACACACTA
CAATGCCAGAAATGTGTAGACCATATAAACAGCTTGGGTTACTTCACTTA
AAATCAATTGTCAGAGCTATTTTATCAGGGCAAGACAAAAAAGGTGGCAC
TTCCGTTCGGTTTGGGAACGCAATCTCTAAACTTTTCAGCCTAACCAAAA
TGTTTTATTTTTCACTTTTCTTCTAAACTGAAAAAATTACTGAAATTTGA
GGGGGTTTTGATTGACATAGCTTAAAGGGTCCCCTCGCTTGTTTGTGATC
TTTAAGAAATCAATCTATATTGGTCGAAAAACCCCTAACAACATATTCAA
AGAACATAAAACTTACTGCTAGTTCCTGTAGAGATATCGCGCATTTGTCT
CAACTACTTGTGTTACAAGAGCGCGAGAAAATTCAAAGGACTTCAGAAGC
CAGGTTGAGTGAACATCAAAATTTATAATTTGTAATTATGGTGCAAAGAA
AGAGTTTTGCATGCTAATACTTTGGGCAGTTGCTTTTCATATGATCATGA
AGTGAGTGCCTTGTTATCATATTTAAGCGAGGGGTCCCTTTAAGAAAAGC
ATATAAAACGAACTTCCCCTGCCTGAGGAAAACCTAGGCAAAGACAGATT
TGTTTTATACCCCTAGAGACCAAAAGTTGGAGAGCATCAAAATGATGCGC
GCAAATCTTTATTGCCAATTTACAGGAAAGGTGTATTAGAAGAGGGATGC
CAACATTACTAGATAGACCAACTTACGGTACTTGCTGAAAGTCCCGAAAG
TTTCAGGCTTAAAAAGATTAATGTCCAATCTATTTCTTTTTCAGAAACCA
GCAAAGATTGACAAAGATGCACAAGAAGAACCTTTGTTGCGAGAAAATCC
ACGTAGATTTGTCTTGTTCCCAATCAAATATCCTGATATCTGGGAAATGT
ACAAAAAGGCAGAGGCATCATTCTGGACTGCTGAAGAAGTGGATTTGGCT
GTTGATGTGAAACATTGGCAAGAGAAACTGAAACCTCAAGAGCGATACTT
TATTTCACATGTATTAGCATTCTTTGCTGCAAGTGATGGTATTGTTAATG
AAAACCTGGTAAGCAAACCTCTTGCGCCTACAAGGGAGAATAGGCAATTG
CTTTACTCTAGACCATTCTTCATATATTTTTAATGTTTAATCATCACAAG
ACCGCCTTTTATCATTCATGAAAATCAATGGGGTCTAAATCTTGTTTCTT
TAGAAATACATCAGTAAAATACTTAACATATCGCCAATGTTCAAAAACTG
CATTTCAGACCTTAACAATAAGAGGTCATCGTGACTAAAGACATGTAGCT
TCTGGCTGTTCCTTTGCCCATTAAATTATTGGCCCATGGATATTTCTATG
AACTATTTTTTCTCTAATCTCTTTTACAGGTTGAATGTTTCAGCCAAGAA
GTCCAAATTCCAGAAGCCCGTGCATTTTATGGTTTCCAAATTGCAATCGA
AAACATCCACTCAGAAATGTACTCTTTATTGATTGAGACTTTGATTGAAG
ATCCAACTGAACGTGGAAATCTCTTTAATGCCATTGAAACCATGCCTTGC
ATTCAAAAGAAAGCTGTCTGGGCTTTGAAATGGATCAATAAAGAGCGAGC
ATCCTATGCTGAACGTATCATTGCATTTGCTGCAGTTGAGGGAATCTTCT
TCTCTGGTTCCTTTGCATCTATCTTTTGGTTGAAAAGCAGGTGAGTTAAA
TCCTACTTTGGTTCCTTGATATACTTCACTCTTAACTGTTTAACTGTCAA
CCTTGTGACTGAACTCAAATATTTAAATTTATTTTTCAGGGGAGTCATGC
CTGGACTTACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTACAC
TGTGACTTTGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCAGA
AGAGAAAGTCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGAAT
TCTTGACCGAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGATTA
ATGAAAACATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTGG
ATGTTCAAAGGTAAGGAATATTTGAAAAAAACATGATTGATCTAATACTG
TTTAGCAATTGGGCTGCATCCCCTTCCTTAGATTTAACTCAAATTCAATC
ACTAGCTTTACCTGACATTAGAGTACTACACTGTACTATACACACACCAT
ACTATAGAACCCAGAACTTTTTAGCTCAAATAAATCTAAATTAGAAATGT
TGACATCTACACCTTTGTTCCTACTTTGAAATTTATCCTGTGTATCAAAC
CAATCCCTTATCCTGGGCAAAGTACTAAAAAAGTTTTCTTTTTTAATTTT
ATATAGATTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAACATTTC
TTTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTACCAAA
AGTCTGGTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTCAGTTC
GACGAACTAGATGATTTGGATTTCTAAATAGTTTTACAATTGGATTTTAT
TTTTTGCTTTTTTTAATTGTAATGTATATTTTATTTAATTTTACTCAGGT
CTTATATTTTATATCCTTTATCAGATGTACATAGATTGAATAACAGAAAT
AGACATTTTACACTGTTCATTTTAATTTCACGTCTCAAAATCACTAACCT
ACAAAGAGATTCTATAATACCTTTGACCTGTCGAGAATTAGCTTGATTAG
AACAACATTTATATCACC

Coding sequence (CDS) from alignment at sc0000204:150750..153867-

>TCONS_00015133 ID=TCONS_00015133|Name=TCONS_00015133|organism=Clytia hemisphaerica|type=CDS|length=5775bp|location=Sequence derived from alignment at sc0000204:150750..153867- (Clytia hemisphaerica)
ATTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAACATTTCTTTGGG
ACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTACCAAAAGTCTG
GTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTCAGTTCGACGAA
CTAGATGATTTGGATTTCTAAGGGAGTCATGCCTGGACTTACCTTTTCAA
ATGAGTTAATCAGTCGTGATGAAGGATTACACTGTGACTTTGCTTGTCTA
ATGTTCAAACATTTGGTCAACAAACCTTCAGAAGAGAAAGTCAAAGAAAT
CATTTTAGATGCTGTCAGAATTGAACAGGAATTCTTGACCGAATCATTAC
CATGTGACTTGCTTGGAATGAACAAAGGATTAATGAAAACATACATTGAA
TTTGTTGCAGACAGATTGCTTCTTGCTCTTGGATGTTCAAAGGTTGAATG
TTTCAGCCAAGAAGTCCAAATTCCAGAAGCCCGTGCATTTTATGGTTTCC
AAATTGCAATCGAAAACATCCACTCAGAAATGTACTCTTTATTGATTGAG
ACTTTGATTGAAGATCCAACTGAACGTGGAAATCTCTTTAATGCCATTGA
AACCATGCCTTGCATTCAAAAGAAAGCTGTCTGGGCTTTGAAATGGATCA
ATAAAGAGCGAGCATCCTATGCTGAACGTATCATTGCATTTGCTGCAGTT
GAGGGAATCTTCTTCTCTGGTTCCTTTGCATCTATCTTTTGGTTGAAAAG
CAGAAACCAGCAAAGATTGACAAAGATGCACAAGAAGAACCTTTGTTGCG
AGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAATATCCTGATATCT
GGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACTGCTGAAGAAGTG
GATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACTGAAACCTCAAGA
GCGATACTTTATTTCACATGTATTAGCATTCTTTGCTGCAAGTGATGGTA
TTGTTAATGAAAACCTGATGGCTCTCGTCGACAGAACTAACGTGCTCAAG
AACAAGGAAAACATCATGGTACCAAACTCCAACCAAATTGGACTTGATTT
GGAGAAAAAGATGCAAAAACCAATGGTCAGCGATGTTGCCTCTATCATCG
CAGCAATTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAACATTTCT
TTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTACCAAAA
GTCTGGTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTCAGTTCG
ACGAACTAGATGATTTGGATTTCTAAGGGAGTCATGCCTGGACTTACCTT
TTCAAATGAGTTAATCAGTCGTGATGAAGGATTACACTGTGACTTTGCTT
GTCTAATGTTCAAACATTTGGTCAACAAACCTTCAGAAGAGAAAGTCAAA
GAAATCATTTTAGATGCTGTCAGAATTGAACAGGAATTCTTGACCGAATC
ATTACCATGTGACTTGCTTGGAATGAACAAAGGATTAATGAAAACATACA
TTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTGGATGTTCAAAGGTT
GAATGTTTCAGCCAAGAAGTCCAAATTCCAGAAGCCCGTGCATTTTATGG
TTTCCAAATTGCAATCGAAAACATCCACTCAGAAATGTACTCTTTATTGA
TTGAGACTTTGATTGAAGATCCAACTGAACGTGGAAATCTCTTTAATGCC
ATTGAAACCATGCCTTGCATTCAAAAGAAAGCTGTCTGGGCTTTGAAATG
GATCAATAAAGAGCGAGCATCCTATGCTGAACGTATCATTGCATTTGCTG
CAGTTGAGGGAATCTTCTTCTCTGGTTCCTTTGCATCTATCTTTTGGTTG
AAAAGCAGAAACCAGCAAAGATTGACAAAGATGCACAAGAAGAACCTTTG
TTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAATATCCTGA
TATCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACTGCTGAAG
AAGTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACTGAAACCT
CAAGAGCGATACTTTATTTCACATGTATTAGCATTCTTTGCTGCAAGTGA
TGGTATTGTTAATGAAAACCTGATGGCTCTCGTCGACAGAACTAACGTGC
TCAAGAACAAGGAAAACATCATGGTACCAAACTCCAACCAAATTGGACTT
GATTTGGAGAAAAAGATGCAAAAACCAATGGTCAGCGATGTTGCCTCTAT
CATCGCAGCAATTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAACA
TTTCTTTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTAC
CAAAAGTCTGGTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTCA
GTTCGACGAACTAGATGATTTGGATTTCTAAGGGAGTCATGCCTGGACTT
ACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTACACTGTGACTT
TGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCAGAAGAGAAAG
TCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGAATTCTTGACC
GAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGATTAATGAAAAC
ATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTGGATGTTCAA
AGGTTGAATGTTTCAGCCAAGAAGTCCAAATTCCAGAAGCCCGTGCATTT
TATGGTTTCCAAATTGCAATCGAAAACATCCACTCAGAAATGTACTCTTT
ATTGATTGAGACTTTGATTGAAGATCCAACTGAACGTGGAAATCTCTTTA
ATGCCATTGAAACCATGCCTTGCATTCAAAAGAAAGCTGTCTGGGCTTTG
AAATGGATCAATAAAGAGCGAGCATCCTATGCTGAACGTATCATTGCATT
TGCTGCAGTTGAGGGAATCTTCTTCTCTGGTTCCTTTGCATCTATCTTTT
GGTTGAAAAGCAGAAACCAGCAAAGATTGACAAAGATGCACAAGAAGAAC
CTTTGTTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAATAT
CCTGATATCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACTGC
TGAAGAAGTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACTGA
AACCTCAAGAGCGATACTTTATTTCACATGTATTAGCATTCTTTGCTGCA
AGTGATGGTATTGTTAATGAAAACCTGATGGCTCTCGTCGACAGAACTAA
CGTGCTCAAGAACAAGGAAAACATCATGGTACCAAACTCCAACCAAATTG
GACTTGATTTGGAGAAAAAGATGCAAAAACCAATGGTCAGCGATGTTGCC
TCTATCATCGCAGCAATTTGGCATCGTGAAAATCCTTTCGATTTTATGGA
GAACATTTCTTTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTG
ACTACCAAAAGTCTGGTGTCATGGAATCACTAAACGATACAGGAAAAGAC
CTTCAGTTCGACGAACTAGATGATTTGGATTTCTAAGGGAGTCATGCCTG
GACTTACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTACACTGT
GACTTTGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCAGAAGA
GAAAGTCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGAATTCT
TGACCGAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGATTAATG
AAAACATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTGGATG
TTCAAAGGTTGAATGTTTCAGCCAAGAAGTCCAAATTCCAGAAGCCCGTG
CATTTTATGGTTTCCAAATTGCAATCGAAAACATCCACTCAGAAATGTAC
TCTTTATTGATTGAGACTTTGATTGAAGATCCAACTGAACGTGGAAATCT
CTTTAATGCCATTGAAACCATGCCTTGCATTCAAAAGAAAGCTGTCTGGG
CTTTGAAATGGATCAATAAAGAGCGAGCATCCTATGCTGAACGTATCATT
GCATTTGCTGCAGTTGAGGGAATCTTCTTCTCTGGTTCCTTTGCATCTAT
CTTTTGGTTGAAAAGCAGAAACCAGCAAAGATTGACAAAGATGCACAAGA
AGAACCTTTGTTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCA
AATATCCTGATATCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGG
ACTGCTGAAGAAGTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAA
ACTGAAACCTCAAGAGCGATACTTTATTTCACATGTATTAGCATTCTTTG
CTGCAAGTGATGGTATTGTTAATGAAAACCTGATGGCTCTCGTCGACAGA
ACTAACGTGCTCAAGAACAAGGAAAACATCATGGTACCAAACTCCAACCA
AATTGGACTTGATTTGGAGAAAAAGATGCAAAAACCAATGGTCAGCGATG
TTGCCTCTATCATCGCAGCAATTTGGCATCGTGAAAATCCTTTCGATTTT
ATGGAGAACATTTCTTTGGGACGTAAAGCCAACTTCTTCGAAAGTCGTGT
ATCTGACTACCAAAAGTCTGGTGTCATGGAATCACTAAACGATACAGGAA
AAGACCTTCAGTTCGACGAACTAGATGATTTGGATTTCTAAGGGAGTCAT
GCCTGGACTTACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTAC
ACTGTGACTTTGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCA
GAAGAGAAAGTCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGA
ATTCTTGACCGAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGAT
TAATGAAAACATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTT
GGATGTTCAAAGGTTGAATGTTTCAGCCAAGAAGTCCAAATTCCAGAAGC
CCGTGCATTTTATGGTTTCCAAATTGCAATCGAAAACATCCACTCAGAAA
TGTACTCTTTATTGATTGAGACTTTGATTGAAGATCCAACTGAACGTGGA
AATCTCTTTAATGCCATTGAAACCATGCCTTGCATTCAAAAGAAAGCTGT
CTGGGCTTTGAAATGGATCAATAAAGAGCGAGCATCCTATGCTGAACGTA
TCATTGCATTTGCTGCAGTTGAGGGAATCTTCTTCTCTGGTTCCTTTGCA
TCTATCTTTTGGTTGAAAAGCAGAAACCAGCAAAGATTGACAAAGATGCA
CAAGAAGAACCTTTGTTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCC
AATCAAATATCCTGATATCTGGGAAATGTACAAAAAGGCAGAGGCATCAT
TCTGGACTGCTGAAGAAGTGGATTTGGCTGTTGATGTGAAACATTGGCAA
GAGAAACTGAAACCTCAAGAGCGATACTTTATTTCACATGTATTAGCATT
CTTTGCTGCAAGTGATGGTATTGTTAATGAAAACCTGATGGCTCTCGTCG
ACAGAACTAACGTGCTCAAGAACAAGGAAAACATCATGGTACCAAACTCC
AACCAAATTGGACTTGATTTGGAGAAAAAGATGCAAAAACCAATGGTCAG
CGATGTTGCCTCTATCATCGCAGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008473	XLOC_008473	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015133-protein	TCONS_00015133-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000204	supercontig	sc0000204:150750..153867 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1747	24.4726	34.1325	33.6866	477.642	379.095	142.519	152.932	182.632	240.586	116.966	109.109	53.653	44.4706	44.5007	69.1687	158.028	147.531	8.90307	13.02	71.1882	67.1117	105.576	93.9399	61.3958	68.0718	61.7051	26.9265	89.4319	85.4637

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000358	RNR_small_fam
IPR030475	RNR_small_AS
IPR033909	RNR_small
IPR009078	Ferritin-like_SF

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0009263	deoxyribonucleotide biosynthetic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009263	deoxyribonucleotide biosynthetic process
biological_process	GO:0055114	oxidation-reduction process

Blast

[Close]

BLAST of TCONS_00015133 vs. Swiss-Prot (Human)
Match: RIR2 (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 486.493 bits (1251), Expect = 1.458e-168
Identity = 246/311 (79.10%), Postives = 278/311 (89.39%), Query Frame = 1

Query:  343 QEEPLLRENPRRFVLFPIKYPDIWEMYKKAEASFWTAEEVDLAVDVKHWQEKLKPQERYFISHVLAFFAASDGIVNENLVECFSQEVQIPEARAFYGFQIAIENIHSEMYSLLIETLIEDPTERGNLFNAIETMPCIQKKAVWALKWINKERASYAERIIAFAAVEXXXXXXXXXXXXWLKSRGVMPGLTFSNELISRDEGLHCDFACLMFKHLVNKPSEEKVKEIILDAVRIEQEFLTESLPCDLLGMNKGLMKTYIEFVADRLLLALGCSKIWHRENPFDFMENISLGRKANFFESRVSDYQKSGVMES 1275
            ++EPLLRENPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDL+ D++HW E LKP+ERYFISHVLAFFAASDGIVNENLVE FSQEVQI EAR FYGFQIA+ENIHSEMYSLLI+T I+DP ER  LFNAIETMPC++KKA WAL+WI  + A+Y ER++AFAAVEGIFFSGSFASIFWLK RG+MPGLTFSNELISRDEGLHCDFACLMFKHLV+KPSEE+V+EII++AVRIEQEFLTE+LP  L+GMN  LMK YIEFVADRL+L LG SK++  ENPFDFMENISL  K NFFE RV +YQ+ GVM S
Sbjct:   68 EDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHW-ESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSS 377

The following BLAST results are available for this feature:

BLAST of TCONS_00015133 vs. Swiss-Prot (Human)

BLAST of TCONS_00015133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIR2	1.458e-168	79.10	Ribonucleoside-diphosphate reductase subunit M2 OS...	[more]

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TCONS_00015133 (transcript) - C. hemisphaerica