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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015132 ID=TCONS_00015132|Name=TCONS_00015132|organism=Clytia hemisphaerica|type=transcript|length=2890bpRun BLAST on NCBI transcript from alignment at sc0000204:125462..145287- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015132 ID=TCONS_00015132|Name=TCONS_00015132|organism=Clytia hemisphaerica|type=transcript|length=19826bp|location=Sequence derived from alignment at sc0000204:125462..145287- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015132 vs. Swiss-Prot (Human)
Match: CFA47 (Cilia- and flagella-associated protein 47 OS=Homo sapiens GN=CFAP47 PE=2 SV=4) HSP 1 Score: 297.36 bits (760), Expect = 4.900e-83 Identity = 206/734 (28.07%), Postives = 376/734 (51.23%), Query Frame = 3
Query: 189 VKITPSVVEFYDAEPNVVHQMKISVQNLDKVSKHVKLLPPNSKNFCIECKEDEKFLAPGLELSAIVEYYNEETIDCEDNLVFKIDEHFVEVPLLSYAPKSILTINGSCDLGTIVADGKVYTRDVAILNHGIKFGDFKIEIDEEAELPFKVMPLEGSIQPGYSQPIRFEFVSKNVEEIDVKLRVLLDNEVTDYLHFKANVVSRKLQIQLKEKEGRPVDRVDFGCTYYGSDVVKGYTLYNESPVPISFVGVFEEDAEGEEKAVDVTQ----TVMNLCASKERLDSPTPEALVVEMVPNEGTLKPFEECQVXXXXXXXXXXXXTGWKKDEKLAPRRDYAMFLHIKAVGIVNKANEDLD-----------IELALLGTALPVAISILPSLFLEFDDCPIGQQKKSIMHIRNDSADVPICFAVRKIAHFHCSPPYGFVTADDMLDLIFSFQPRQSGTFNNQMILDIIGQTC--DIRTSGKPVYRKIVLESRTLIVSGFSSVNHLSTS---AKLKPQVEPSFVHDETSLQVF-TSQQTAFDSDFRLQPSKTDFLSN-------ENIRVAHPDDRACSIRPYNSNDMVRTRFTKLERYTYHDPDYSHTPDARDSQKKHKEKYNSYIN-TKAQELRLKKSAKDFDKYENNVELGMRPAQGLRKPKLKLSDIGKEMKQIKREREEKMARKSNLLSSKAIDDNRSKSSKKKIVDGLKAVPSTPAEKKDCSKVLSPQELFQINFG 2303
+++ P+ V+F D V+++ I+V N+ + ++ ++ P F + +K LA GL+++A+VEY+ ++ D D L+ I+ E+PL+ P L I + GT+VA+ KVY++++ I NHG G FK E +LP + P G + S I+ +F + +D + V+L + L KA+VV + +++ L R ++ + FG ++GS +K +YN SP PI++V + ++DA GEE D+ Q + NL ++ + T +++ +PNEGTL+P+++ + F F+PK KKD + R+DYA+FL ++VG + D D +ELAL GT LPV + P L F C +G++ + I+N +P+ + +K A+F P G +T M+D++ SF P Q G F + +++IIG D+++ + + L F+S+ ST K P + PS + V +++ + LQ + T ++ +++ +A P+DRA +IR + + R FTK+ R+ Y + D+++T + +K H+ Y Y+ ++ L+ K++ ++ ++ ++G+ P GL+ P L ++I +E+ R + LL+++ I +S ++K++ GLK+ PSTP EK DCS +L+P+++ Q+ G
Sbjct: 40 LRVIPAEVKFLDTMAGRVYRLPITVHNICRWNQKIRFKEPVKPQFKLMLTSLDKELASGLQMTAMVEYHPDKDEDTFDRLLISIENKTTEIPLIGLIPSCQLEIESVVNFGTLVANSKVYSKEITITNHGKAPGIFKAEY--HGQLPILIFPTSGIVDAKSSMVIKVDFCADQPRIVDEEAIVILQGQPEMLLSIKAHVVEQIIEL-LSMSSDRRLECIHFGPVFFGSSKIKHARVYNNSPEPINWVAIIQDDAVGEELGTDIQQRTDIALNNLTYIRKIKNIDT--TIIISCLPNEGTLQPYQKTVITFCFTPKLMAVG---KKDIGPSYRQDYALFLRFESVGSKDGFLRDDDYKTIKSERFQKVELALTGTGLPVLLQFDPGPVLNFKPCFMGERSEIQCIIKNQCELLPVTYHFKKTANFEIDPEKGKITGGGMVDVMCSFVPHQLGVFKVKQMIEIIGLVAEEDLQSLSVKSFHHVYL--------AFNSICKASTKKVVMKFDPGILPSIRNPTGKFVVKDLAKRKNYAPVAMLQSAMTRTHNHRSCEEPVKDMLLAFPNDRAATIRSKDHHKHFRPIFTKVPRFNYVNHDFAYTTFEKQQKKLHENYYAMYLKYLRSVRLQKKQAERERMYSYDDTDIGLEPGSGLKSPSLSEAEIEEELSSAANS-----IRANRLLTTRGIASQEEESVRRKVLKGLKSEPSTPQEKHDCSLMLTPKQIHQVIVG 752 The following BLAST results are available for this feature:
BLAST of TCONS_00015132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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