TCONS_00015120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015120
Unique NameTCONS_00015120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015120 ID=TCONS_00015120|Name=TCONS_00015120|organism=Clytia hemisphaerica|type=transcript|length=1489bp
GTCGCTGAAGGCATCCAAGTGCGTTATGGTAAAACAAAAGACCTTGACAA
AACACAAACGAAATATACCGTCAAAACTTACAAAGCTTCAGACATGTGTG
AACCTCCTGCTAACACAACTGGATTTTGGGATGCTGGGTATATTTATGAT
GTTTTGTTGACTGACTTGGAACCCAACACGAAATATTATTACTCCTGTGG
TAGTAGAGAGATTATGTCATCTGTTTACAACTTCACCACCCCTTTGAAAG
GAGGAGACAGAACGCCCTTCAATTTCATTTCTTACGGGGACATGGGGACC
AGTTCTTTCGCCGAACAAACAGCCAAATTGGTTCACCAAGAGATCAATGA
GAATGATATCAAATTTGTTTACCATGCAGGGGACATCTCTTACGCTCGTG
GATATGCGTATATTTGGGATCAATGGTTCGATATGATTCAGCCAATGGCA
TCAGTTGTTCCTTACATGGTCTCTCTTGGAAATCATGAATATCAACATCT
GATTGGATGGGAGAAAGAACCTTTCCACTTTCCACCCTTCAAACCATCAT
GGTTCAATGCTGGTAGAGGATCTTTTGGTGAATGTGCGAAACCCACGCTC
AATCGTTTTCACATGCCTGAAAATGGACTGAGCTTGTTATGGTACAGTTA
CGATTATGGCATGGTTCACATGGTGGTGTTTAGTACAGAACACGATTACC
GCCCAGGATCACAACAATATAAATGGTTGGAGAATGATTTGAAGAATGTT
GATCGCAAGAAAACTCCTTTTGTGATCGTAAGCGGGCATCGACCAATGTA
TTGTAGTGAATATGGTCCAGTTGATTACAAAACTACTATCCACATGCAAC
AGTATGTAGAAGATCTCTTATACGAACACAAAGTAGATTTAGGTCTGTGG
GCGCACTACCATTCATACGAGAGAACATGCAAAGTCTACCGCAATGAATG
CCGGGAAGATGGTATCTTACATTTGATGATTGGATCTGCAGGAAAACAAT
TGGACAGTGAGAAATGGTATAAGAAAGAATGGTCTGCATACCATGATCGT
AACTATGGTTACGGAAGATTCTCTGTCAAAAATTCAACTCATATTTTTTT
CGAGTTTGTTCAAGATAGTATCGATAAAGTCGTCGATTCTGTGTGGATCA
CCAAATGAATTAATCGAATATCGTCTTAGGTGATAAATCGCGATTTTCCT
GACTGATTACTATTTGCCAAGCCACATTCATGAGATAAAAGTTCGGATAT
TTTGATGAATAGTACCAACATCTTGGAGTGGCCAAGCCATGAAATTTAct
taaaatgttaaatttttctCAAGATGGACGTTATTTTTTCACCATCAAAG
ccttttcaccatttttttacttatactttttttaattttgtacattttat
GCATCATATTTTCGAAGTAAATATTTAAAACTCTTTTGCCACTGTCCTCG
ATTTCTTCAGCTTCTGTAAGAGGATTGGCTAAATCATGA
Run BLAST on NCBI

transcript from alignment at sc0000204:23388..26312-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015120 ID=TCONS_00015120|Name=TCONS_00015120|organism=Clytia hemisphaerica|type=transcript|length=2925bp|location=Sequence derived from alignment at sc0000204:23388..26312- (Clytia hemisphaerica)
GTCGCTGAAGGCATCCAAGTGCGTTATGGTAAAACAAAAGACCTTGACAA
AACACAAACGAAATATACCGTCAAAACTTACAAAGCTTCAGACATGTGTG
AACCTCCTGCTAACACAACTGGATTTTGGGATGCTGGGTATATTTATGAT
GTTTTGTTGACTGACTTGGAACCCAACACGAAATATTATTACTCCTGTGG
TAGTAGAGAGGTAAACAATTAAATACAATTTGGCTAAAAAAACCACACAT
TTCTGATATCGAAATAGGTTGCACTCTCCACTCTTTTTTTTATAAGAGAA
ATCCGTTTAGAAGAGATGGTAAATTTTAGTTCAAATGAAAAGGAGAGCTG
TTTAATGCAGGCTTTACACTGGACGAAACCCATATCACTTCATATGTATC
ATTTTTCTGAATCTTCTATAATATTCTCTTTCAGATTATGTCATCTGTTT
ACAACTTCACCACCCCTTTGAAAGGAGGAGACAGAACGCCCTTCAATTTC
ATTTCTTACGGGGACATGGGGACCAGTTCTTTCGCCGAACAAACAGCCAA
ATTGGTTCACCAAGAGATCAATGAGAATGATATCAAATTTGTTTACCATG
CAGGGGACATCTCTTACGCTCGTGGATATGTAAGAAATCATTTTAAATCA
CATTTGAAAATCTTTGAAAGAAAATCATTAATTTGAGTGAAAACCTGGCA
TCGTTTGCAACTACAAAGTTAGTTTTTTTCTCTATGTACTATGTACTAAA
GAATGTCACTTTTACTCTACAGTGTGTCCCAAAAAAGCGGACAAATTTTT
GATTGAAGTAGAATCCTCAAAACTCATTATCTCAAGTGAGTTTAGAATAA
TTGAAGTAAGATTAAAATTCTTTGTTCAATCGATGGATATATAATTCTCA
AGATAATTGAGTATGTTTTTGAGATTGAAATATTAAGTATATAAGTCACA
AAATTTCACATGGATACGAGGATTTTACTTTATATGAAATTTTGTCTGTT
TTTTTTGGAACATTGTATTTTAACATTCTTAAAATTGTCTTGATTATTCA
GGCGTATATTTGGGATCAATGGTTCGATATGATTCAGCCAATGGCATCAG
TTGTTCCTTACATGGTCTCTCTTGGAAATCATGAATATCAACATCTGATT
GGATGGGAGAAAGAACCTTTCCACTTTCCACCCTTCAAACCATCATGGTT
CAATGCTGGTAGAGGATCTTTTGGTGAATGTGCGAAACCCACGCTCAATC
GTTTTCACATGCCTGAAAATGGACTGAGCTTGTTATGGTATGTCTATAAA
CCCTTCAAACCTGAAAGACGCCTATGCTCTTTTTTTTTAAGAGTATAAAG
ATAGTTGTAAAAGTTGGAAATTTTCATAATCTTCAAACAGCAGCAAATTT
TCATTTTTATATTCTGAGGCCAAATGTCTGACTCTTTACTTCTGAAGTAG
TAATTGACTTATGAACTGGTATGACTTAAACATAATTTTCCATAAGCTTC
CGTATTTAAACCTACGTCTCAATGGGAAATCAACCAAATTAATTATTTTT
GCAGGTACAGTTACGATTATGGCATGGTTCACATGGTGGTGTTTAGTACA
GAACACGATTACCGCCCAGGATCACAACAATATAAATGGTTGGAGAATGA
TTTGAAGAATGTTGATCGCAAGAAAACTCCTTTTGTGATCGTAAGCGGGC
ATCGACCAATGTATTGTAGTGAATATGGTCCAGGTATGTAACTAAGCTGC
ACTGTTCGCCTACTCGCTGTTTCGGGAATTTCTCAAAATGAAGCATTTCC
CCAAATAGGTTGTAGATTAGTTGGATTGAAATTTAGATTGAGTAGGTGCA
TGATTCTTGGTAAATTAAGTATTATTCCTGTCTCTTTGCGTTAAAGAAAA
ACGCTGTCAGCAGTTGCTTTATAATCTAGGATTCCATCTACATATTTAAG
TATAGTTGAATTGCAACCCTTTCTCAAGGTATTAGCGAGTTTATGTGTGT
GTTTTTGTACGGTGGAGACGGTTAGCTTCCGATTTGACTAGATCCTGATC
AACTGTGGACGACGGTAAGCAAGCACTTATACCGTCCTCCATTTTGCGGG
TTAGAAGTGCGGGTTATTCCGAATTGCTTCAGTCACTCCGCCGTCCTCTA
AAGTGAAAATACTTAAGTCGCTAGTAACCACAATTTTAGCGGATTCTTTA
TATCGTAAAGAATTCTGATTACTTTTAAAACTATAATATGAACCATTCCG
TTCTAGTTGATTACAAAACTACTATCCACATGCAACAGTATGTAGAAGAT
CTCTTATACGAACACAAAGTAGATTTAGGTCTGTGGGCGCACTACCATTC
ATACGAGAGAACATGCAAAGTCTACCGCAATGAATGCCGGGAAGATGGTA
TCTTACATTTGATGATTGGATCTGCAGGAAAACAATTGGACAGTGAGAAA
TGGTATAAGAAAGAATGGTCTGCATACCATGATCGTAACTATGGTTACGG
AAGATTCTCTGTCAAAAATTCAACTCATATTTTTTTCGAGTTTGTTCAAG
ATAGTATCGATAAAGTCGTCGATTCTGTGTGGATCACCAAATGAATTAAT
CGAATATCGTCTTAGGTGATAAATCGCGATTTTCCTGACTGATTACTATT
TGCCAAGCCACATTCATGAGATAAAAGTTCGGATATTTTGATGAATAGTA
CCAACATCTTGGAGTGGCCAAGCCATGAAATTTACTTAAAATGTTAAATT
TTTCTCAAGATGGACGTTATTTTTTCACCATCAAAGCCTTTTCACCATTT
TTTTACTTATACTTTTTTTAATTTTGTACATTTTATGCATCATATTTTCG
AAGTAAATATTTAAAACTCTTTTGCCACTGTCCTCGATTTCTTCAGCTTC
TGTAAGAGGATTGGCTAAATCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008471XLOC_008471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015120-exon-sc0000204-1575043694:26103..26312TCONS_00015120-exon-sc0000204-1575043694:26103..26312Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1575043694:25684..25878TCONS_00015120-exon-sc0000204-1575043694:25684..25878Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1575043694:25026..25261TCONS_00015120-exon-sc0000204-1575043694:25026..25261Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1575043694:24580..24758TCONS_00015120-exon-sc0000204-1575043694:24580..24758Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1575043694:23388..24056TCONS_00015120-exon-sc0000204-1575043694:23388..24056Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1510915933:26103..26312TCONS_00015120-exon-sc0000204-1510915933:26103..26312Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1510915933:25684..25878TCONS_00015120-exon-sc0000204-1510915933:25684..25878Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1510915933:25026..25261TCONS_00015120-exon-sc0000204-1510915933:25026..25261Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1510915933:24580..24758TCONS_00015120-exon-sc0000204-1510915933:24580..24758Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1510915933:23388..24056TCONS_00015120-exon-sc0000204-1510915933:23388..24056Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1491911889:26103..26312TCONS_00015120-exon-sc0000204-1491911889:26103..26312Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1491911889:25684..25878TCONS_00015120-exon-sc0000204-1491911889:25684..25878Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1491911889:25026..25261TCONS_00015120-exon-sc0000204-1491911889:25026..25261Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1491911889:24580..24758TCONS_00015120-exon-sc0000204-1491911889:24580..24758Clytia hemisphaericaexon
TCONS_00015120-exon-sc0000204-1491911889:23388..24056TCONS_00015120-exon-sc0000204-1491911889:23388..24056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:23388..26312 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.4826	60.8501	59.0831	51.8446	123.606	91.8827	36.7737	34.7671	31.8217	28.1557	31.0739	28.6182	16.6361	18.6841	14.1135	13.5454	13.0749	19.1314	34.9799	43.6541	13.3577	12.144	24.4172	23.091	26.0231	24.3032	39.8538	37.8374	9.82124	9.93863
Blast
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BLAST of TCONS_00015120 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.247e-43
Identity = 119/370 (32.16%), Postives = 177/370 (47.84%), Query Frame = 1 
Query:  139 YIYDVLLTDLEPNTKYYYSCGSREIMSSVYNFTTPLKGGDRTPFNFISYGDMGTSSFAEQTAKLVHQEINENDIKFVYHAGDISYA--RGYAYIWDQWFDMIQPMASVVPYMVSLGNHEYQHLIGWXXXXXXXXXXXXSWFNAGRGSFGECAKPTLNRFHMPENGLSLLWYSYDYGMVHMVVFSTE------HDYRPGSQQYKWLENDLK--NVDRKKTPFVIVSGHRPMYCSEYGPVD-------YKTTIHMQQY-VEDLLYEHKVDLGLWAHYHSYERTCKVYR----NECRE------DGILHLMIGSAG--KQLDSEKWYKKEWSAYHDRNYGYGRFSVKNSTHIFFEFVQDSID-KVVDSVWITK 1155
            YI+ V L  L P  +Y Y CGS +  S  + F   LK G         +GD+G  +   +    + ++  +     V H GD +Y   +  A + D++  +I+P+A+ +PYM   GNHE ++                S + A              RF MP +   L WYS+D G  H++ FSTE      +      +Q++WLE+DL+  N +R   P++I  GHRPMYCS     D        +  +  + Y +EDL Y++ VDL LWAH HSYER   +Y     N  RE       G +H++ GSAG  ++L     + + WSA   + YGY R  + N THI  + V D  D K+VD VW+ +
Sbjct:   92 YIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRA-LKNGAHWSPRLAVFGDLGADN--PKAVPRLRRDTQQGMYDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERY--------------NFSNYKA--------------RFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
BLAST of TCONS_00015120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACP71.247e-4332.16Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE... [more]
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