TCONS_00015108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015108
Unique NameTCONS_00015108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015108 ID=TCONS_00015108|Name=TCONS_00015108|organism=Clytia hemisphaerica|type=transcript|length=1292bp
TCTATGGGAAAGTGGTTAAGATTACTTCtcaatctttctctaattcaaat
aatatttttggtctcttgaagatcgaatcGGAAAAAGTCAACAGTATTGA
TTTTCTGATCATATAGCAGTGACAATTAGAGAAATGTCggaaaagaaaga
taatttatcatgtgTTTTGTATGGTGCCGGTGACATGCGCCTGGAGCAAA
GAGGTGTCCCTAAACCCAAGGATGATGAGGTTTTGCTTTCGATGCATTCA
GTGGGAATCTGTGGAAGTGATATCCATTACTACAAACATGGCCGCATTGG
AAATTTCGTGGTCAACAAACCAATGGTGATGGGACACGAGGCTAGTGGAA
CTGTTGTAGCCTGTGGCAAGGATGTCAAACATCTAAAGAAAGGAGACCGG
GTAGCAATCGAGCCAGGAGTTCCTTGCAGAAAGTGTATTCGTTGTAAATC
AGGGAGATATAACCTGTGTCCAGATATCTTCTTTTGTGCCACACCACCAG
ACGATGGGAATCTTTGCCGTTTTTACACACACGCTGCTGACTTCTGTTAT
CGGCTTCCTGATCACGTGACTTTTGAGGAAGGTGCATTGCTGGAACCCCT
ATCAGTCGGTATTTATGCATGTCAACGAGCTTCTGTTACCAATGGTGACA
GGATACTTATTTGTGGAGCAGGACCAATTGGTTTAGTAACATTATTGGCG
GCAAAATCGTCTGGTGCAAGTGAAGTGGCTATCACAGATCTTGACGAAGG
ACGACTGTCAATGGCAAAACAACTTGGTGCTGATGTTACTATTAGAATTC
AAAGCAAAGATGGTAGAGAAGTAGCGAAACAAATCGAAAGTGTGTTCGGC
GAGAGTGACAAAACAATCGAATGCACTGGAGTAGAGTCGAGCATCACTTC
CGCTATTCTTGCAACACGTTGTGGTGGAACGCTTGTCATCGTGGGGTCTG
GGACGGGTGATTCAACAATCCCATTGAACACGGCACGACGCAAAGAAATT
GATATTCGTGGTGTTTTCAGATATGCTAATTGTTACCCGGTAGCGTTGAA
TATGGTAGCCTCAGGACAGATCAACGTCAAGCTTCTTGTCACGCACCGTT
TCGCATTAGAAGATTCCCATGATGCATTTCGAACATCAGCTAGCAACAAA
GATGGCGCCATCAAAGTAATGATTAAATGTAGTAAATAGATGATGTTATG
ATGTAAATAATTTTGTTCAATATCGGACTATATAGACTGAGAatataatc
aaaataaaacaccGCCCTGTTAATGCTGCAATATTATAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00015108-protein

>TCONS_00015108-protein ID=TCONS_00015108-protein|Name=TCONS_00015108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MSEKKDNLSCVLYGAGDMRLEQRGVPKPKDDEVLLSMHSVGICGSDIHYY
KHGRIGNFVVNKPMVMGHEASGTVVACGKDVKHLKKGDRVAIEPGVPCRK
CIRCKSGRYNLCPDIFFCATPPDDGNLCRFYTHAADFCYRLPDHVTFEEG
ALLEPLSVGIYACQRASVTNGDRILICGAGPIGLVTLLAAKSSGASEVAI
TDLDEGRLSMAKQLGADVTIRIQSKDGREVAKQIESVFGESDKTIECTGV
ESSITSAILATRCGGTLVIVGSGTGDSTIPLNTARRKEIDIRGVFRYANC
YPVALNMVASGQINVKLLVTHRFALEDSHDAFRTSASNKDGAIKVMIKCS
K
Run BLAST on NCBI

transcript from alignment at sc0000204:271928..275976+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015108 ID=TCONS_00015108|Name=TCONS_00015108|organism=Clytia hemisphaerica|type=transcript|length=4049bp|location=Sequence derived from alignment at sc0000204:271928..275976+ (Clytia hemisphaerica)
TCTATGGGAAAGTGGTTAAGATTACTTCtcaatctttctctaattcaaat
aatatttttggtctcttgaagatcgaatcGGAAAAAGTCAACAGTATTGA
TTTTCTGATCATATAGCAGTGACAATTAGAGAAATGTCggaaaagaaaga
taatttatcatgtgTTTTGTATGGTGCCGGTGACATGCGCCTGGTAAGTT
ACGCTTCGTTTTCGTCTCATTTTTTAAGACAAAGAAACCATAATTTCTTG
GCTTTGCTTTTTCCTTCGAAAAGTGCTCCCTAGAGTCTCATATCGGAGTC
TTTTGCacaatattatcaaaatttgtgACGGTTAAAAATTCTTTATATGA
CGTCAACATGaaatttttcaggcaaaactttaaaacaattctaaaaattg
GCTTAGATATAATCTAACTTAAAATTCGAGTACAATGGAAGTACAATCCT
TCTTTATAGGAGCAAAGAGGTGTCCCTAAACCCAAGGATGATGGTATGAC
TACTTTTGTACATCTATATTCCATACATTGGTCTATTCAATTAGAAATCC
ATGCAGGGGGGGGGTGGGGTGtacaaaccttttcaagtcaaaataaaatt
gttggaaatgcgaggataccccctggaaaatggcccAAAATATGCAAAGA
AActcttggaaattttttttgtccactggaaaatgaaaaaacactctTTT
CGACACTAATTTTTCTCaggttaccccctggaaatgttcgtccacccccc
tggtATGGAGATAAAATGCAATGGGCCATTTCAACATTCTTATCCTTCAT
TTATAGAATAAAGGCTTTCTCATATTTGAATGATATTTTTATAGAGGTTT
TGCTTTCGATGCATTCAGTGGGAATCTGTGGAAGTGATATCCATTACTAC
AAACATGGCCGCATTGGAAATTTCGTGGTCAACAAACCAATGGTGATGGG
ACACGAGGCTAGTGGAACTGTTGTAGCCTGTGGCAAGGATGTCAAACATC
TAAAGAAAGGTAATATACTAACAAGACTTGAGAGAAGAGCTAGGTTCTCT
GTTGGTTGAATGTACCTACAAATCACCTAAGATACATGTATAGTCTTATA
GTAGAGTTTTGCTACTATTTCGGTTTTTTAAACTCTTATCATTTTGATAT
GCAAGTCATTCACCCCATTCTCTTGTTCATGGTTTAAATATCGTAGATTC
AACTTAGCTAGACCAATATCTGTTTACAACAGTTTCAACTCTACTAGCAA
TATATAATCTGCCTTCTTTCAGGAGACCGGGTAGCAATCGAGCCAGGAGT
TCCTTGCAGAAAGTGTATTCGTTGTAAATCAGGGAGATATAACCTGTGTC
CAGATATCTTCTTTTGTGCCACACCACCAGACGATGGGAATCTTTGCCGT
TTTTACACACACGCTGCTGACTTCTGTTATCGGTTTGTcatgtttcattt
ttcactgaaagtACTTTTTTTGGAAGAGTCTCTTTCTTGGGAAAGAAGGC
CAATACCTTGATGTTATAGAACAAACTAGATTAAATTGTAAATTGATATC
TAGAGCTCTGACCATAGTtataaaaccctttttttaCTGAAGATAAAGCC
TTTGCTTTAGGTTTTAACACTTTTATTTAACGATCGATCATCATTTTCCT
TTGTTGTTGCAGGCTTCCTGATCACGTGACTTTTGAGGAAGGTGCATTGC
TGGAACCCCTATCAGTCGGTATTTATGCATGTCAACGAGCTTCTGTTACC
AATGGTGACAGGATACTTATTTGTGGAGCAGGTTAGTGCTGTGATTTTAT
CGCGGGAAAGTTGAATAGCCCTCTACATACAGCACCCTCTGTCTTACAGC
CCCGTTGGAACTTCTTCACACAATTGGGATGaagatttctatcgaaatcc
caatttggatagatattctattgttttcagctCATAAACTCCAGTGTGAT
GGTTTTGGAATGCAATTTTTCCATTAAATTTAAAATGGGCATGacaattt
tccagttaagctGTAACTGTAGGATATATTTCCCAACGGGGACAAAATTT
CGGCCAtctgccaccggggcactggtCCCGCCAGGTCTGTGGCACAGGGT
TGTCATACATGTATGGAAGTTGTTTAAGCTTTTTGAGTTATTTGAGCTAT
CATATTCAAGCTTTTTCAATATAAAAGGATTTATATGTTACTCTTTATAT
GATTTTAGGACCAATTGGTTTAGTAACATTATTGGCGGCAAAATCGTCTG
GTGCAAGTGAAGTGGCTATCACAGGTAAAAAATTATGCCAACCCCACTGA
TTGAAGAAATATCGGATAAAATCTTGCACTTAAACAAATGAAATTCATTG
TTAGTGGTGTTTAATTTCATAACTGTAACGGCTTTTGCCTTTAGAGGCAT
TTCGAAGTACAAACTATCTCTGGCCTCATATCTCTTGCTTCTTGCTACCT
CGACTAATAACATGTTCCTTAAGAAACTAAACGATTGATTTCAAGTGTAT
GTTTCTTTTACCCATACCCAATGTTTGTGAAGACGGGAACCATCTGGTTA
TAACTCTGACCATCAATATCAGATTGTAATCAGCTAAAACTTGTTGCTGA
TCCTTTCATCCCAATGATGAAATCATCAAACATCAAACAATCTCGTCCTT
GGGACAAATCCCCTTTAATACTTCAGATCTTGACGAAGGACGACTGTCAA
TGGCAAAACAACTTGGTGCTGATGTTACTATTAGAATTCAAAGCAAAGAT
GGTAGAGAAGTAGCGAAACAAATCGAAAGTGTGTTCGGCGAGAGTGACAA
AACAATCGAATGCACTGGAGTAGAGTCGAGCATCACTTCCGCTATTCTTG
TGAGTAATTGGTGACATCTTGTTAAAAGACAAAATCGTATATTCAAAATG
AGGTTTCTCTGATATGAGTGAGGTATTTTAATCAAATAGCCTGTTGTTTA
GTCAAGCTTTACAATTTAGACCCGGAgaggggggtactaggattgcGAGC
TGATGGGGGAGTGCCGCTCGACTATTGACCCCtagacaaagaaaaatttt
gtgaattttacgatccatattgggacaaatttgaccaaatttcgatcttt
ccgggggtaaaaagttgaaattttcctatttctccaaCCCTTAGTGAGAC
TGAAATAGATAGACCTCTTATTCATGAATCATCATTGTAAACCAACttaa
cattttgaaatataattgaTTTCTTTCATTCACTCCAGGCAACACGTTGT
GGTGGAACGCTTGTCATCGTGGGGTCTGGGACGGGTGATTCAACAATCCC
ATTGAACACGGCACGACGCAAAGAAATTGATATTCGTGGTGTTTTCAGAT
ATGCTAATTGGTATGTGGAGGAATCGTTTTTGGGTTGCTGGATCTAGTTT
CCAGACCTTTTTCAATCTAGTAACCAGCAAAGTCACTTGCAcctcttttt
aattttattaattaatttttacaatcggacttttcataaattacgtcaag
gACATTACTTGCCTCGCAAACAGTTTCCATGGTGACTATGTCCTTGAGAC
ACAAAATgattttatgaatagaaagtagttttaattaaatccactgggag
ttaatcaccatggcgataatttcaaaacgaggcaagtgatgttcgtgacg
taatgaaaaggtctattgcgaGCACTATCAGAATCATGGAACTAAGGGAC
TTGGTTCGAGtttggatattttcttttcCCGCAAATGTAAACAGATTTTA
GCGACCTGATCACTATTTATCTCATCTTTTTAATTCTAGTTACCCGGTAG
CGTTGAATATGGTAGCCTCAGGACAGATCAACGTCAAGCTTCTTGTCACG
CACCGTTTCGCATTAGAAGATTCCCATGATGCATTTCGAACATCAGCTAG
CAACAAAGATGGCGCCATCAAAGTAATGATTAAATGTAGTAAATAGATGA
TGTTATGATGTAAATAATTTTGTTCAATATCGGACTATATAGACTGAGAa
tataatcaaaataaaacaccGCCCTGTTAATGCTGCAATATTATAAAAC

Coding sequence (CDS) from alignment at sc0000204:271928..275976+

>TCONS_00015108 ID=TCONS_00015108|Name=TCONS_00015108|organism=Clytia hemisphaerica|type=CDS|length=9504bp|location=Sequence derived from alignment at sc0000204:271928..275976+ (Clytia hemisphaerica)
ATGTCggaaaagaaagataatttatcatgtgTTTTGTATGGTGCCGGTGA
CATGCGCCTGGAGCAAAGAGGTGTCCCTAAACCCAAGGATGATGAGGTTT
TGCTTTCGATGCATTCAGTGGGAATCTGTGGAAGTGATATCCATTACTAC
AAACATGGCCGCATTGGAAATTTCGTGGTCAACAAACCAATGGTGATGGG
ACACGAGGCTAGTGGAACTGTTGTAGCCTGTGGCAAGGATGTCAAACATC
TAAAGAAAGGAGACCGGGTAGCAATCGAGCCAGGAGTTCCTTGCAGAAAG
TGTATTCGTTGTAAATCAGGGAGATATAACCTGTGTCCAGATATCTTCTT
TTGTGCCACACCACCAGACGATGGGAATCTTTGCCGTTTTTACACACACG
CTGCTGACTTCTGTTATCGGCTTCCTGATCACGTGACTTTTGAGGAAGGT
GCATTGCTGGAACCCCTATCAGTCGGTATTTATGCATGTCAACGAGCTTC
TGTTACCAATGGTGACAGGATACTTATTTGTGGAGCAGGACCAATTGGTT
TAGTAACATTATTGGCGGCAAAATCGTCTGGTGCAAGTGAAGTGGCTATC
ACAGATCTTGACGAAGGACGACTGTCAATGGCAAAACAACTTGGTGCTGA
TGTTACTATTAGAATTCAAAGCAAAGATGGTAGAGAAGTAGCGAAACAAA
TCGAAAGTGTGTTCGGCGAGAGTGACAAAACAATCGAATGCACTGGAGTA
GAGTCGAGCATCACTTCCGCTATTCTTGCAACACGTTGTGGTGGAACGCT
TGTCATCGTGGGGTCTGGGACGGGTGATTCAACAATCCCATTGAACACGG
CACGACGCAAAGAAATTGATATTCGTGGTGTTTTCAGATATGCTAATTGT
TACCCGGTAGCGTTGAATATGGTAGCCTCAGGACAGATCAACGTCAAGCT
TCTTGTCACGCACCGTTTCGCATTAGAAGATTCCCATGATGCATTTCGAA
CATCAGCTAGCAACAAAGATGGCGCCATCAAAGTAATGATTAAATGTAGT
AAATAGATGTCggaaaagaaagataatttatcatgtgTTTTGTATGGTGC
CGGTGACATGCGCCTGGAGCAAAGAGGTGTCCCTAAACCCAAGGATGATG
AGGTTTTGCTTTCGATGCATTCAGTGGGAATCTGTGGAAGTGATATCCAT
TACTACAAACATGGCCGCATTGGAAATTTCGTGGTCAACAAACCAATGGT
GATGGGACACGAGGCTAGTGGAACTGTTGTAGCCTGTGGCAAGGATGTCA
AACATCTAAAGAAAGGAGACCGGGTAGCAATCGAGCCAGGAGTTCCTTGC
AGAAAGTGTATTCGTTGTAAATCAGGGAGATATAACCTGTGTCCAGATAT
CTTCTTTTGTGCCACACCACCAGACGATGGGAATCTTTGCCGTTTTTACA
CACACGCTGCTGACTTCTGTTATCGGCTTCCTGATCACGTGACTTTTGAG
GAAGGTGCATTGCTGGAACCCCTATCAGTCGGTATTTATGCATGTCAACG
AGCTTCTGTTACCAATGGTGACAGGATACTTATTTGTGGAGCAGGACCAA
TTGGTTTAGTAACATTATTGGCGGCAAAATCGTCTGGTGCAAGTGAAGTG
GCTATCACAGATCTTGACGAAGGACGACTGTCAATGGCAAAACAACTTGG
TGCTGATGTTACTATTAGAATTCAAAGCAAAGATGGTAGAGAAGTAGCGA
AACAAATCGAAAGTGTGTTCGGCGAGAGTGACAAAACAATCGAATGCACT
GGAGTAGAGTCGAGCATCACTTCCGCTATTCTTGCAACACGTTGTGGTGG
AACGCTTGTCATCGTGGGGTCTGGGACGGGTGATTCAACAATCCCATTGA
ACACGGCACGACGCAAAGAAATTGATATTCGTGGTGTTTTCAGATATGCT
AATTGTTACCCGGTAGCGTTGAATATGGTAGCCTCAGGACAGATCAACGT
CAAGCTTCTTGTCACGCACCGTTTCGCATTAGAAGATTCCCATGATGCAT
TTCGAACATCAGCTAGCAACAAAGATGGCGCCATCAAAGTAATGATTAAA
TGTAGTAAATAGATGTCggaaaagaaagataatttatcatgtgTTTTGTA
TGGTGCCGGTGACATGCGCCTGGAGCAAAGAGGTGTCCCTAAACCCAAGG
ATGATGAGGTTTTGCTTTCGATGCATTCAGTGGGAATCTGTGGAAGTGAT
ATCCATTACTACAAACATGGCCGCATTGGAAATTTCGTGGTCAACAAACC
AATGGTGATGGGACACGAGGCTAGTGGAACTGTTGTAGCCTGTGGCAAGG
ATGTCAAACATCTAAAGAAAGGAGACCGGGTAGCAATCGAGCCAGGAGTT
CCTTGCAGAAAGTGTATTCGTTGTAAATCAGGGAGATATAACCTGTGTCC
AGATATCTTCTTTTGTGCCACACCACCAGACGATGGGAATCTTTGCCGTT
TTTACACACACGCTGCTGACTTCTGTTATCGGCTTCCTGATCACGTGACT
TTTGAGGAAGGTGCATTGCTGGAACCCCTATCAGTCGGTATTTATGCATG
TCAACGAGCTTCTGTTACCAATGGTGACAGGATACTTATTTGTGGAGCAG
GACCAATTGGTTTAGTAACATTATTGGCGGCAAAATCGTCTGGTGCAAGT
GAAGTGGCTATCACAGATCTTGACGAAGGACGACTGTCAATGGCAAAACA
ACTTGGTGCTGATGTTACTATTAGAATTCAAAGCAAAGATGGTAGAGAAG
TAGCGAAACAAATCGAAAGTGTGTTCGGCGAGAGTGACAAAACAATCGAA
TGCACTGGAGTAGAGTCGAGCATCACTTCCGCTATTCTTGCAACACGTTG
TGGTGGAACGCTTGTCATCGTGGGGTCTGGGACGGGTGATTCAACAATCC
CATTGAACACGGCACGACGCAAAGAAATTGATATTCGTGGTGTTTTCAGA
TATGCTAATTGTTACCCGGTAGCGTTGAATATGGTAGCCTCAGGACAGAT
CAACGTCAAGCTTCTTGTCACGCACCGTTTCGCATTAGAAGATTCCCATG
ATGCATTTCGAACATCAGCTAGCAACAAAGATGGCGCCATCAAAGTAATG
ATTAAATGTAGTAAATAGATGTCggaaaagaaagataatttatcatgtgT
TTTGTATGGTGCCGGTGACATGCGCCTGGAGCAAAGAGGTGTCCCTAAAC
CCAAGGATGATGAGGTTTTGCTTTCGATGCATTCAGTGGGAATCTGTGGA
AGTGATATCCATTACTACAAACATGGCCGCATTGGAAATTTCGTGGTCAA
CAAACCAATGGTGATGGGACACGAGGCTAGTGGAACTGTTGTAGCCTGTG
GCAAGGATGTCAAACATCTAAAGAAAGGAGACCGGGTAGCAATCGAGCCA
GGAGTTCCTTGCAGAAAGTGTATTCGTTGTAAATCAGGGAGATATAACCT
GTGTCCAGATATCTTCTTTTGTGCCACACCACCAGACGATGGGAATCTTT
GCCGTTTTTACACACACGCTGCTGACTTCTGTTATCGGCTTCCTGATCAC
GTGACTTTTGAGGAAGGTGCATTGCTGGAACCCCTATCAGTCGGTATTTA
TGCATGTCAACGAGCTTCTGTTACCAATGGTGACAGGATACTTATTTGTG
GAGCAGGACCAATTGGTTTAGTAACATTATTGGCGGCAAAATCGTCTGGT
GCAAGTGAAGTGGCTATCACAGATCTTGACGAAGGACGACTGTCAATGGC
AAAACAACTTGGTGCTGATGTTACTATTAGAATTCAAAGCAAAGATGGTA
GAGAAGTAGCGAAACAAATCGAAAGTGTGTTCGGCGAGAGTGACAAAACA
ATCGAATGCACTGGAGTAGAGTCGAGCATCACTTCCGCTATTCTTGCAAC
ACGTTGTGGTGGAACGCTTGTCATCGTGGGGTCTGGGACGGGTGATTCAA
CAATCCCATTGAACACGGCACGACGCAAAGAAATTGATATTCGTGGTGTT
TTCAGATATGCTAATTGTTACCCGGTAGCGTTGAATATGGTAGCCTCAGG
ACAGATCAACGTCAAGCTTCTTGTCACGCACCGTTTCGCATTAGAAGATT
CCCATGATGCATTTCGAACATCAGCTAGCAACAAAGATGGCGCCATCAAA
GTAATGATTAAATGTAGTAAATAGATGTCggaaaagaaagataatttatc
atgtgTTTTGTATGGTGCCGGTGACATGCGCCTGGAGCAAAGAGGTGTCC
CTAAACCCAAGGATGATGAGGTTTTGCTTTCGATGCATTCAGTGGGAATC
TGTGGAAGTGATATCCATTACTACAAACATGGCCGCATTGGAAATTTCGT
GGTCAACAAACCAATGGTGATGGGACACGAGGCTAGTGGAACTGTTGTAG
CCTGTGGCAAGGATGTCAAACATCTAAAGAAAGGAGACCGGGTAGCAATC
GAGCCAGGAGTTCCTTGCAGAAAGTGTATTCGTTGTAAATCAGGGAGATA
TAACCTGTGTCCAGATATCTTCTTTTGTGCCACACCACCAGACGATGGGA
ATCTTTGCCGTTTTTACACACACGCTGCTGACTTCTGTTATCGGCTTCCT
GATCACGTGACTTTTGAGGAAGGTGCATTGCTGGAACCCCTATCAGTCGG
TATTTATGCATGTCAACGAGCTTCTGTTACCAATGGTGACAGGATACTTA
TTTGTGGAGCAGGACCAATTGGTTTAGTAACATTATTGGCGGCAAAATCG
TCTGGTGCAAGTGAAGTGGCTATCACAGATCTTGACGAAGGACGACTGTC
AATGGCAAAACAACTTGGTGCTGATGTTACTATTAGAATTCAAAGCAAAG
ATGGTAGAGAAGTAGCGAAACAAATCGAAAGTGTGTTCGGCGAGAGTGAC
AAAACAATCGAATGCACTGGAGTAGAGTCGAGCATCACTTCCGCTATTCT
TGCAACACGTTGTGGTGGAACGCTTGTCATCGTGGGGTCTGGGACGGGTG
ATTCAACAATCCCATTGAACACGGCACGACGCAAAGAAATTGATATTCGT
GGTGTTTTCAGATATGCTAATTGTTACCCGGTAGCGTTGAATATGGTAGC
CTCAGGACAGATCAACGTCAAGCTTCTTGTCACGCACCGTTTCGCATTAG
AAGATTCCCATGATGCATTTCGAACATCAGCTAGCAACAAAGATGGCGCC
ATCAAAGTAATGATTAAATGTAGTAAATAGATGTCggaaaagaaagataa
tttatcatgtgTTTTGTATGGTGCCGGTGACATGCGCCTGGAGCAAAGAG
GTGTCCCTAAACCCAAGGATGATGAGGTTTTGCTTTCGATGCATTCAGTG
GGAATCTGTGGAAGTGATATCCATTACTACAAACATGGCCGCATTGGAAA
TTTCGTGGTCAACAAACCAATGGTGATGGGACACGAGGCTAGTGGAACTG
TTGTAGCCTGTGGCAAGGATGTCAAACATCTAAAGAAAGGAGACCGGGTA
GCAATCGAGCCAGGAGTTCCTTGCAGAAAGTGTATTCGTTGTAAATCAGG
GAGATATAACCTGTGTCCAGATATCTTCTTTTGTGCCACACCACCAGACG
ATGGGAATCTTTGCCGTTTTTACACACACGCTGCTGACTTCTGTTATCGG
CTTCCTGATCACGTGACTTTTGAGGAAGGTGCATTGCTGGAACCCCTATC
AGTCGGTATTTATGCATGTCAACGAGCTTCTGTTACCAATGGTGACAGGA
TACTTATTTGTGGAGCAGGACCAATTGGTTTAGTAACATTATTGGCGGCA
AAATCGTCTGGTGCAAGTGAAGTGGCTATCACAGATCTTGACGAAGGACG
ACTGTCAATGGCAAAACAACTTGGTGCTGATGTTACTATTAGAATTCAAA
GCAAAGATGGTAGAGAAGTAGCGAAACAAATCGAAAGTGTGTTCGGCGAG
AGTGACAAAACAATCGAATGCACTGGAGTAGAGTCGAGCATCACTTCCGC
TATTCTTGCAACACGTTGTGGTGGAACGCTTGTCATCGTGGGGTCTGGGA
CGGGTGATTCAACAATCCCATTGAACACGGCACGACGCAAAGAAATTGAT
ATTCGTGGTGTTTTCAGATATGCTAATTGTTACCCGGTAGCGTTGAATAT
GGTAGCCTCAGGACAGATCAACGTCAAGCTTCTTGTCACGCACCGTTTCG
CATTAGAAGATTCCCATGATGCATTTCGAACATCAGCTAGCAACAAAGAT
GGCGCCATCAAAGTAATGATTAAATGTAGTAAATAGATGTCggaaaagaa
agataatttatcatgtgTTTTGTATGGTGCCGGTGACATGCGCCTGGAGC
AAAGAGGTGTCCCTAAACCCAAGGATGATGAGGTTTTGCTTTCGATGCAT
TCAGTGGGAATCTGTGGAAGTGATATCCATTACTACAAACATGGCCGCAT
TGGAAATTTCGTGGTCAACAAACCAATGGTGATGGGACACGAGGCTAGTG
GAACTGTTGTAGCCTGTGGCAAGGATGTCAAACATCTAAAGAAAGGAGAC
CGGGTAGCAATCGAGCCAGGAGTTCCTTGCAGAAAGTGTATTCGTTGTAA
ATCAGGGAGATATAACCTGTGTCCAGATATCTTCTTTTGTGCCACACCAC
CAGACGATGGGAATCTTTGCCGTTTTTACACACACGCTGCTGACTTCTGT
TATCGGCTTCCTGATCACGTGACTTTTGAGGAAGGTGCATTGCTGGAACC
CCTATCAGTCGGTATTTATGCATGTCAACGAGCTTCTGTTACCAATGGTG
ACAGGATACTTATTTGTGGAGCAGGACCAATTGGTTTAGTAACATTATTG
GCGGCAAAATCGTCTGGTGCAAGTGAAGTGGCTATCACAGATCTTGACGA
AGGACGACTGTCAATGGCAAAACAACTTGGTGCTGATGTTACTATTAGAA
TTCAAAGCAAAGATGGTAGAGAAGTAGCGAAACAAATCGAAAGTGTGTTC
GGCGAGAGTGACAAAACAATCGAATGCACTGGAGTAGAGTCGAGCATCAC
TTCCGCTATTCTTGCAACACGTTGTGGTGGAACGCTTGTCATCGTGGGGT
CTGGGACGGGTGATTCAACAATCCCATTGAACACGGCACGACGCAAAGAA
ATTGATATTCGTGGTGTTTTCAGATATGCTAATTGTTACCCGGTAGCGTT
GAATATGGTAGCCTCAGGACAGATCAACGTCAAGCTTCTTGTCACGCACC
GTTTCGCATTAGAAGATTCCCATGATGCATTTCGAACATCAGCTAGCAAC
AAAGATGGCGCCATCAAAGTAATGATTAAATGTAGTAAATAGATGTCgga
aaagaaagataatttatcatgtgTTTTGTATGGTGCCGGTGACATGCGCC
TGGAGCAAAGAGGTGTCCCTAAACCCAAGGATGATGAGGTTTTGCTTTCG
ATGCATTCAGTGGGAATCTGTGGAAGTGATATCCATTACTACAAACATGG
CCGCATTGGAAATTTCGTGGTCAACAAACCAATGGTGATGGGACACGAGG
CTAGTGGAACTGTTGTAGCCTGTGGCAAGGATGTCAAACATCTAAAGAAA
GGAGACCGGGTAGCAATCGAGCCAGGAGTTCCTTGCAGAAAGTGTATTCG
TTGTAAATCAGGGAGATATAACCTGTGTCCAGATATCTTCTTTTGTGCCA
CACCACCAGACGATGGGAATCTTTGCCGTTTTTACACACACGCTGCTGAC
TTCTGTTATCGGCTTCCTGATCACGTGACTTTTGAGGAAGGTGCATTGCT
GGAACCCCTATCAGTCGGTATTTATGCATGTCAACGAGCTTCTGTTACCA
ATGGTGACAGGATACTTATTTGTGGAGCAGGACCAATTGGTTTAGTAACA
TTATTGGCGGCAAAATCGTCTGGTGCAAGTGAAGTGGCTATCACAGATCT
TGACGAAGGACGACTGTCAATGGCAAAACAACTTGGTGCTGATGTTACTA
TTAGAATTCAAAGCAAAGATGGTAGAGAAGTAGCGAAACAAATCGAAAGT
GTGTTCGGCGAGAGTGACAAAACAATCGAATGCACTGGAGTAGAGTCGAG
CATCACTTCCGCTATTCTTGCAACACGTTGTGGTGGAACGCTTGTCATCG
TGGGGTCTGGGACGGGTGATTCAACAATCCCATTGAACACGGCACGACGC
AAAGAAATTGATATTCGTGGTGTTTTCAGATATGCTAATTGTTACCCGGT
AGCGTTGAATATGGTAGCCTCAGGACAGATCAACGTCAAGCTTCTTGTCA
CGCACCGTTTCGCATTAGAAGATTCCCATGATGCATTTCGAACATCAGCT
AGCAACAAAGATGGCGCCATCAAAGTAATGATTAAATGTAGTAAATAGAT
GTCggaaaagaaagataatttatcatgtgTTTTGTATGGTGCCGGTGACA
TGCGCCTGGAGCAAAGAGGTGTCCCTAAACCCAAGGATGATGAGGTTTTG
CTTTCGATGCATTCAGTGGGAATCTGTGGAAGTGATATCCATTACTACAA
ACATGGCCGCATTGGAAATTTCGTGGTCAACAAACCAATGGTGATGGGAC
ACGAGGCTAGTGGAACTGTTGTAGCCTGTGGCAAGGATGTCAAACATCTA
AAGAAAGGAGACCGGGTAGCAATCGAGCCAGGAGTTCCTTGCAGAAAGTG
TATTCGTTGTAAATCAGGGAGATATAACCTGTGTCCAGATATCTTCTTTT
GTGCCACACCACCAGACGATGGGAATCTTTGCCGTTTTTACACACACGCT
GCTGACTTCTGTTATCGGCTTCCTGATCACGTGACTTTTGAGGAAGGTGC
ATTGCTGGAACCCCTATCAGTCGGTATTTATGCATGTCAACGAGCTTCTG
TTACCAATGGTGACAGGATACTTATTTGTGGAGCAGGACCAATTGGTTTA
GTAACATTATTGGCGGCAAAATCGTCTGGTGCAAGTGAAGTGGCTATCAC
AGATCTTGACGAAGGACGACTGTCAATGGCAAAACAACTTGGTGCTGATG
TTACTATTAGAATTCAAAGCAAAGATGGTAGAGAAGTAGCGAAACAAATC
GAAAGTGTGTTCGGCGAGAGTGACAAAACAATCGAATGCACTGGAGTAGA
GTCGAGCATCACTTCCGCTATTCTTGCAACACGTTGTGGTGGAACGCTTG
TCATCGTGGGGTCTGGGACGGGTGATTCAACAATCCCATTGAACACGGCA
CGACGCAAAGAAATTGATATTCGTGGTGTTTTCAGATATGCTAATTGTTA
CCCGGTAGCGTTGAATATGGTAGCCTCAGGACAGATCAACGTCAAGCTTC
TTGTCACGCACCGTTTCGCATTAGAAGATTCCCATGATGCATTTCGAACA
TCAGCTAGCAACAAAGATGGCGCCATCAAAGTAATGATTAAATGTAGTAA
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008467XLOC_008467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015108-exon-sc0000204-1491911889:271928..272120TCONS_00015108-exon-sc0000204-1491911889:271928..272120Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:271928..272120TCONS_00015108-exon-sc0000204-1510915933:271928..272120Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:271928..272120TCONS_00015108-exon-sc0000204-1575043694:271928..272120Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:272387..272420TCONS_00015108-exon-sc0000204-1491911889:272387..272420Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:272387..272420TCONS_00015108-exon-sc0000204-1510915933:272387..272420Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:272387..272420TCONS_00015108-exon-sc0000204-1575043694:272387..272420Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:272772..272936TCONS_00015108-exon-sc0000204-1491911889:272772..272936Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:272772..272936TCONS_00015108-exon-sc0000204-1510915933:272772..272936Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:272772..272936TCONS_00015108-exon-sc0000204-1575043694:272772..272936Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:273200..273359TCONS_00015108-exon-sc0000204-1491911889:273200..273359Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:273200..273359TCONS_00015108-exon-sc0000204-1510915933:273200..273359Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:273200..273359TCONS_00015108-exon-sc0000204-1575043694:273200..273359Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:273590..273708TCONS_00015108-exon-sc0000204-1491911889:273590..273708Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:273590..273708TCONS_00015108-exon-sc0000204-1510915933:273590..273708Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:273590..273708TCONS_00015108-exon-sc0000204-1575043694:273590..273708Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:274136..274201TCONS_00015108-exon-sc0000204-1491911889:274136..274201Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:274136..274201TCONS_00015108-exon-sc0000204-1510915933:274136..274201Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:274136..274201TCONS_00015108-exon-sc0000204-1575043694:274136..274201Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:274604..274776TCONS_00015108-exon-sc0000204-1491911889:274604..274776Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:274604..274776TCONS_00015108-exon-sc0000204-1510915933:274604..274776Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:274604..274776TCONS_00015108-exon-sc0000204-1575043694:274604..274776Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:275166..275287TCONS_00015108-exon-sc0000204-1491911889:275166..275287Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:275166..275287TCONS_00015108-exon-sc0000204-1510915933:275166..275287Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:275166..275287TCONS_00015108-exon-sc0000204-1575043694:275166..275287Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1491911889:275717..275976TCONS_00015108-exon-sc0000204-1491911889:275717..275976Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1510915933:275717..275976TCONS_00015108-exon-sc0000204-1510915933:275717..275976Clytia hemisphaericaexon
TCONS_00015108-exon-sc0000204-1575043694:275717..275976TCONS_00015108-exon-sc0000204-1575043694:275717..275976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015108-proteinTCONS_00015108-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:271928..275976 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229311	0.575009	0.63055	0.108864	0.485947	0.209456	0.336933	0.276003	0.772945	0.307741	0.796536	2.87986	17.7127	19.8655	25.8561	33.5166	3.19694	4.41103	1.42776	0.546601	1.48863	1.66849	6.64822	5.83931	5.6978	5.17932	1.66199	4.31447	9.56259	12.447
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020843PKS_ER
IPR013154ADH_N
IPR013149ADH_C
IPR002328ADH_Zn_CS
IPR016040NAD(P)-bd_dom
IPR011032GroES-like
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00015108 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4)

HSP 1 Score: 439.884 bits (1130), Expect = 4.336e-152
Identity = 209/347 (60.23%), Postives = 267/347 (76.95%), Query Frame = 2 
Query:  143 KKDNLSCVLYGAGDMRLEQRGVPKPKDDEVLLSMHSVGICGSDIHYYKHGRIGNFVVNKPMVMGHEASGTVVACGKDVKHLKKGDRVAIEPGVPCRKCIRCKSGRYNLCPDIFFCATPPDDGNLCRFYTHAADFCYRLPDHVTFEEGALLEPLSVGIYACQRASVTNGDRILICGAGPIGLVTLLAAKSSGASEVAITDLDEGRLSMAKQLGADVTIRIQSKDGREVAKQIESVFG-ESDKTIECTGVESSITSAILATRCGGTLVIVGSGTGDSTIPLNTARRKEIDIRGVFRYANCYPVALNMVASGQINVKLLVTHRFALEDSHDAFRTSASNKDGAIKVMIKC 1180
            K +NLS V++G GD+RLE   +P+P  +EVLL MHSVGICGSD+HY+++GRIGNF+V KPMV+GHEASGTV   G  VKHLK GDRVAIEPG P      CK GRYNL P IFFCATPPDDGNLCRFY H A FCY+LPD+VTFEEGAL+EPLSVGI+AC+R  VT G ++L+CGAGPIG+VTLL AK+ GA++V +TDL   RLS AK++GAD+ ++I  +  +E+A+++E   G + + TIECTG E+SI + I ATR GG LV+VG G+  +T+PL  A  +E+DI+GVFRY N +PVA++M+AS  +NVK LVTHRF LE + +AF T    K   +K+M+KC
Sbjct:    6 KPNNLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFET--FKKGLGLKIMLKC 350
The following BLAST results are available for this feature:
BLAST of TCONS_00015108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHSO4.336e-15260.23Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
back to top