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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015103 ID=TCONS_00015103|Name=TCONS_00015103|organism=Clytia hemisphaerica|type=transcript|length=1897bp
ATGATTGACAGCTCAAAGGGACCTCAAAATCTTTAGCACAAAGATAGCGC
ATAAATTAACACAAACTATTGTCTGTTAATTAATCTAATGAAGATGGAAT
GAATTAATGATTTTGATTAAAtgtaagaaaacaatagaaagaatcTTTCT
TCTGTTCAAAACATTATATTGTATACATAATTATAATTAGGAGTAATTAG
AGAGGTCATTATGTAGGCGGCTAATGGACGTCATCAAGGACTTAATGACT
CGAGAAGTATAAATACCAGTTGCAGAAGGTGGAAGTAGATCAGAGTCATC
ATTTACAATACAAAACAGCAGGACCTGTTTTATAAAGATTACTAATAAAC
CtttctattgttattttatCTCATATTTTGCTTGGTACCTCACGACACAC
AATGCGTCAAGTTTTCGAGATGAACAACTCCTTgaattcagaattttctg
gattttctttcTACGGTGAACAAACTTCTAACCAAGATTTCTATTCGAAC
GAACGTTACAATTTCCAACAAGCCAGTCCCGAATACGTGAACCCGATGAC
GTCACAACAACGTAATTACACTCAAATGAATGATGTCAGTCACGCACATA
CGCAAGTCAATCAAGTGTTGGACAACTTGGATTGTGAGAAACGACAAATG
ATGCATGCGTACGAACAACAAGTCAAAATGGAGTTCGAAGATTGTTCTAA
TCAATACAACAACACGCACCAAATGGACTACCAATCACATATGTCTCAAT
CATTACCTGATATCAGATCAACTTATCATCATTTATCCCCGAACGCGTAC
GCGACGAACTATCAGCGAACGAAAAGTTTATCTCATCCTCCATCACCCTC
CAATTTCGATTCCTGCTCATCAGATGGTGGAGAATCTCCAAAAATCACCA
AGAAATCATCTTCCACCTCATCACCGCCCGCTAACAACAAGAAAGACTCC
TCGCGGCCGCGCATGTATAAATTCAATCCAAAACCGTTGACGTTAAATCC
ATCAATGAAGCGTAACCAAACACCAACAGACAACAAAGATGGCGAATATT
GGGACAAACGTAAGAAAAATAACGAAGCATCGCGCAGATCTCGATTAGCC
AGGCGTCTTAAAGAATGCATGGTCatggaagaaatgaaaaagttaaagaa
agaaaatgaagaactgaaagCTGAATTGAGTAAAATGCAGAACGCTGCAA
TTTGCCGAATGTGAATGAACTTCTTGGTTTGGAGGTATAATCTGCCATAA
ACTCTTTAAGAAATACCATTGACTTACTTTTAGCCATTGATTGGCTCACT
AGATCtgtgattttttcaatataaaaattttgacacccccttctcacaga
cccactgggaacccttcccactggaaaaatcggccaaaatatcTTCCCCG
GGGGAAAGTTATCTTCAAATTTCTGTCCCCACTATttctgtccccactga
aaataatcaaataaaccgatCCTCGCtgaaaaatattatgctatttttcc
cattcccactgaattttctgacttgaaaacaaaaaagaattgaaatccct
agccataaaaactatgggaatatcaatccccatcctgcgtcagtccatta
tttttatccgcactggctgaaaaatattctaccgggtctgtgagaagggg
tgtatttTGATATTAATTTTCCTTAGTAATATTCTGAAATTTTTGTCGAT
GACAGAAAGGAGCAGTTGATTTGCTTTTTCGTCATCTCTAGTttgtaaat
aaatagaaagCGATATATTTATGTTAagattttgtaaagtaaagtaAGAA
TTTTTTTGGCAGGCTTCAAAATGATTTGTGTAAAtagaatttttctttga
aaatttaattttaaaaccgTAAAAGAGACAGGTGATCATTTTCCGAG Run BLAST on NCBI protein sequence of TCONS_00015103-protein >TCONS_00015103-protein ID=TCONS_00015103-protein|Name=TCONS_00015103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MRQVFEMNNSLNSEFSGFSFYGEQTSNQDFYSNERYNFQQASPEYVNPMT
SQQRNYTQMNDVSHAHTQVNQVLDNLDCEKRQMMHAYEQQVKMEFEDCSN
QYNNTHQMDYQSHMSQSLPDIRSTYHHLSPNAYATNYQRTKSLSHPPSPS
NFDSCSSDGGESPKITKKSSSTSSPPANNKKDSSRPRMYKFNPKPLTLNP
SMKRNQTPTDNKDGEYWDKRKKNNEASRRSRLARRLKECMVMEEMKKLKK
ENEELKAELSKMQNAAICRM Run BLAST on NCBI transcript from alignment at sc0000204:229251..232160+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015103 ID=TCONS_00015103|Name=TCONS_00015103|organism=Clytia hemisphaerica|type=transcript|length=2910bp|location=Sequence derived from alignment at sc0000204:229251..232160+ (Clytia hemisphaerica)
ATGATTGACAGCTCAAAGGGACCTCAAAATCTTTAGCACAAAGATAGCGC
ATAAATTAACACAAACTATTGTCTGTTAATTAATCTAATGAAGATGGAAT
GAATTAATGATTTTGATTAAAtgtaagaaaacaatagaaagaatcTTTCT
TCTGTTCAAAACATTATATTGTATACATAATTATAATTAGGAGTAATTAG
AGAGGTCATTATGTAGGCGGCTAATGGACGTCATCAAGGACTTAATGACT
CGAGAAGTATAAATACCAGTTGCAGAAGGTGGAAGTAGATCAGAGTCATC
ATTTACAATACAAAACAGCAGGACCTGTTTTATAAAGATTACTAATAAAC
CtttctattgttattttatCTCATATTTTGCTTGGTACCTCACGACACAC
AATGCGTCAAGTTTTCGAGATGAACAACTCCTTgaattcagaattttctg
gattttgtaagtattcaatttctttcttctgttttagaatttttcattaT
ACTCAATTTTTTCTCAAGCTTCACTTTAGCTTCTAcactatttttatttt
gtaagaacaatttttataagaagaactgACAGGCCCAAAATCGCCAAAaa
caagaacaatttaagaccAATGTAACAATTTCAGGCAATtaaggggtcaa
agtagtaataATTAGGTATAAATCCTAAAACACCTCAAGATAACCCTATA
AATAGTCGAATCTAATTTTCGAATCTACTGGGAAATCTGCATGGGAGGCT
tcagattattttcaagcaaaattaatattttctttatgaattctaacttt
ttttatttaaatagcTATATTCCTTTTTTTCTATCAGTTTCATACTGTCT
TCTGTCCACAGAAATTTTAGGATCGGAAACTTCAAGACCCAGCATTTAGA
CTTCCTTATGTTCGAAATTTCTAAAGCATCCATAAGCCAAAAAAATCAAT
CAGGAGGCGGTGGCAATTTAATGTAATTTAAATGGCATCTAATGCTCTTT
TATATTTAGCGACAAACAATTAACcccaaactttaaaaaatgacagaaat
aGGGAATTCTTACcgttttcaagaaatttaattGTCTTTAAGAAATTAAT
GGTTAGTTTGGGATCGTTAACGTTACACAAGCTAACGGAAACATTAACGA
CCTTTCCATCAATAAAGACACcctttaaaaaatgtttaaacaAAACATCT
TAAAAGATTTATGGCAATTCAGAATAAATGtacaaattttctttcaaaca
aGTCCATCTCTTATTTTAATGACCTTAATAAATTTGCTCGTTCTTCCACC
TACACAGATAGCCGTAAAAACCAATCAGTAATTTGCATTACACAACCGCC
CACACGTCGACCTCGTTTTCATGTGATTTGTTCTGCTCAAattgatttca
ttttctttagatACTCTTTAGGGTTTTTTAGTGAACCATTGATTgataaa
taatttctttttttttcagctttcTACGGTGAACAAACTTCTAACCAAGA
TTTCTATTCGAACGAACGTTACAATTTCCAACAAGCCAGTCCCGAATACG
TGAACCCGATGACGTCACAACAACGTAATTACACTCAAATGAATGATGTC
AGTCACGCACATACGCAAGTCAATCAAGTGTTGGACAACTTGGATTGTGA
GAAACGACAAATGATGCATGCGTACGAACAACAAGTCAAAATGGAGTTCG
AAGATTGTTCTAATCAATACAACAACACGCACCAAATGGACTACCAATCA
CATATGTCTCAATCATTACCTGATATCAGATCAACTTATCATCATTTATC
CCCGAACGCGTACGCGACGAACTATCAGCGAACGAAAAGTTTATCTCATC
CTCCATCACCCTCCAATTTCGATTCCTGCTCATCAGATGGTGGAGAATCT
CCAAAAATCACCAAGAAATCATCTTCCACCTCATCACCGCCCGCTAACAA
CAAGAAAGACTCCTCGCGGCCGCGCATGTATAAATTCAATCCAAAACCGT
TGACGTTAAATCCATCAATGAAGCGTAACCAAACACCAACAGACAACAAA
GATGGCGAATATTGGGACAAACGTAAGAAAAATAACGAAGCATCGCGCAG
ATCTCGATTAGCCAGGCGTCTTAAAGAATGCATGGTCatggaagaaatga
aaaagttaaagaaagaaaatgaagaactgaaagCTGAATTGAGTAAAATG
CAGAACGCTGCAATTTGCCGAATGTGAATGAACTTCTTGGTTTGGAGGTA
TAATCTGCCATAAACTCTTTAAGAAATACCATTGACTTACTTTTAGCCAT
TGATTGGCTCACTAGATCtgtgattttttcaatataaaaattttgacacc
cccttctcacagacccactgggaacccttcccactggaaaaatcggccaa
aatatcTTCCCCGGGGGAAAGTTATCTTCAAATTTCTGTCCCCACTATtt
ctgtccccactgaaaataatcaaataaaccgatCCTCGCtgaaaaatatt
atgctatttttcccattcccactgaattttctgacttgaaaacaaaaaag
aattgaaatccctagccataaaaactatgggaatatcaatccccatcctg
cgtcagtccattatttttatccgcactggctgaaaaatattctaccgggt
ctgtgagaaggggtgtatttTGATATTAATTTTCCTTAGTAATATTCTGA
AATTTTTGTCGATGACAGAAAGGAGCAGTTGATTTGCTTTTTCGTCATCT
CTAGTttgtaaataaatagaaagCGATATATTTATGTTAagattttgtaa
agtaaagtaAGAATTTTTTTGGCAGGCTTCAAAATGATTTGTGTAAAtag
aatttttctttgaaaatttaattttaaaaccgTAAAAGAGACAGGTGATC
ATTTTCCGAG Coding sequence (CDS) from alignment at sc0000204:229251..232160+ >TCONS_00015103 ID=TCONS_00015103|Name=TCONS_00015103|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000204:229251..232160+ (Clytia hemisphaerica)
ATGCGTCAAGTTTTCGAGATGAACAACTCCTTgaattcagaattttctgg
attttctttcTACGGTGAACAAACTTCTAACCAAGATTTCTATTCGAACG
AACGTTACAATTTCCAACAAGCCAGTCCCGAATACGTGAACCCGATGACG
TCACAACAACGTAATTACACTCAAATGAATGATGTCAGTCACGCACATAC
GCAAGTCAATCAAGTGTTGGACAACTTGGATTGTGAGAAACGACAAATGA
TGCATGCGTACGAACAACAAGTCAAAATGGAGTTCGAAGATTGTTCTAAT
CAATACAACAACACGCACCAAATGGACTACCAATCACATATGTCTCAATC
ATTACCTGATATCAGATCAACTTATCATCATTTATCCCCGAACGCGTACG
CGACGAACTATCAGCGAACGAAAAGTTTATCTCATCCTCCATCACCCTCC
AATTTCGATTCCTGCTCATCAGATGGTGGAGAATCTCCAAAAATCACCAA
GAAATCATCTTCCACCTCATCACCGCCCGCTAACAACAAGAAAGACTCCT
CGCGGCCGCGCATGTATAAATTCAATCCAAAACCGTTGACGTTAAATCCA
TCAATGAAGCGTAACCAAACACCAACAGACAACAAAGATGGCGAATATTG
GGACAAACGTAAGAAAAATAACGAAGCATCGCGCAGATCTCGATTAGCCA
GGCGTCTTAAAGAATGCATGGTCatggaagaaatgaaaaagttaaagaaa
gaaaatgaagaactgaaagCTGAATTGAGTAAAATGCAGAACGCTGCAAT
TTGCCGAATGTGAATGCGTCAAGTTTTCGAGATGAACAACTCCTTgaatt
cagaattttctggattttctttcTACGGTGAACAAACTTCTAACCAAGAT
TTCTATTCGAACGAACGTTACAATTTCCAACAAGCCAGTCCCGAATACGT
GAACCCGATGACGTCACAACAACGTAATTACACTCAAATGAATGATGTCA
GTCACGCACATACGCAAGTCAATCAAGTGTTGGACAACTTGGATTGTGAG
AAACGACAAATGATGCATGCGTACGAACAACAAGTCAAAATGGAGTTCGA
AGATTGTTCTAATCAATACAACAACACGCACCAAATGGACTACCAATCAC
ATATGTCTCAATCATTACCTGATATCAGATCAACTTATCATCATTTATCC
CCGAACGCGTACGCGACGAACTATCAGCGAACGAAAAGTTTATCTCATCC
TCCATCACCCTCCAATTTCGATTCCTGCTCATCAGATGGTGGAGAATCTC
CAAAAATCACCAAGAAATCATCTTCCACCTCATCACCGCCCGCTAACAAC
AAGAAAGACTCCTCGCGGCCGCGCATGTATAAATTCAATCCAAAACCGTT
GACGTTAAATCCATCAATGAAGCGTAACCAAACACCAACAGACAACAAAG
ATGGCGAATATTGGGACAAACGTAAGAAAAATAACGAAGCATCGCGCAGA
TCTCGATTAGCCAGGCGTCTTAAAGAATGCATGGTCatggaagaaatgaa
aaagttaaagaaagaaaatgaagaactgaaagCTGAATTGAGTAAAATGC
AGAACGCTGCAATTTGCCGAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015103-exon-sc0000204-1491911889:229251..229706 | TCONS_00015103-exon-sc0000204-1491911889:229251..229706 | Clytia hemisphaerica | exon |
| TCONS_00015103-exon-sc0000204-1510915933:229251..229706 | TCONS_00015103-exon-sc0000204-1510915933:229251..229706 | Clytia hemisphaerica | exon |
| TCONS_00015103-exon-sc0000204-1575043694:229251..229706 | TCONS_00015103-exon-sc0000204-1575043694:229251..229706 | Clytia hemisphaerica | exon |
| TCONS_00015103-exon-sc0000204-1491911889:230720..232160 | TCONS_00015103-exon-sc0000204-1491911889:230720..232160 | Clytia hemisphaerica | exon |
| TCONS_00015103-exon-sc0000204-1510915933:230720..232160 | TCONS_00015103-exon-sc0000204-1510915933:230720..232160 | Clytia hemisphaerica | exon |
| TCONS_00015103-exon-sc0000204-1575043694:230720..232160 | TCONS_00015103-exon-sc0000204-1575043694:230720..232160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204 | supercontig | sc0000204:229251..232160 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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