TCONS_00015090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015090
Unique NameTCONS_00015090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015090 ID=TCONS_00015090|Name=TCONS_00015090|organism=Clytia hemisphaerica|type=transcript|length=357bp
TGTATAATGAAAAAGTCTATGTTGCCATATGGAATGGTTATCGACCATCT
GAACTAACTTAATGGCACTTTTTGACTAATATTTGTCCTAGTTTATGTTT
TCTGTCCTCCTATGTTTGTGTCAAATCGTGCGATTGCTCCATGTTAAACT
AATACGCACTTTCTTATAAACAACTTCAATGTTCGGGTCAATAGTTGGGT
TGCTTAGATCATTTTCTGACAAATTTGCTTTGGCTATACCTGATATCATG
CCATTTTCACATATTATGTCAATGGCTATCGTCTGTCATTGTTTGATCAT
CTAAAAACTTTTTACTTCACCAGATAGTGAAAAAATAAGCCATATTGAGG
ACTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000203:324459..324815

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015090 ID=TCONS_00015090|Name=TCONS_00015090|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0000203:324459..324815 (Clytia hemisphaerica)
CTCGAGTCCTCAATATGGCTTATTTTTTCACTATCTGGTGAAGTAAAAAG
TTTTTAGATGATCAAACAATGACAGACGATAGCCATTGACATAATATGTG
AAAATGGCATGATATCAGGTATAGCCAAAGCAAATTTGTCAGAAAATGAT
CTAAGCAACCCAACTATTGACCCGAACATTGAAGTTGTTTATAAGAAAGT
GCGTATTAGTTTAACATGGAGCAATCGCACGATTTGACACAAACATAGGA
GGACAGAAAACATAAACTAGGACAAATATTAGTCAAAAAGTGCCATTAAG
TTAGTTCAGATGGTCGATAACCATTCCATATGGCAACATAGACTTTTTCA
TTATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008452XLOC_008452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015090-exon-sc0000203-1491911889:324459..324815TCONS_00015090-exon-sc0000203-1491911889:324459..324815Clytia hemisphaericaexon
TCONS_00015090-exon-sc0000203-1510915933:324459..324815TCONS_00015090-exon-sc0000203-1510915933:324459..324815Clytia hemisphaericaexon
TCONS_00015090-exon-sc0000203-1575043694:324459..324815TCONS_00015090-exon-sc0000203-1575043694:324459..324815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:324459..324815 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.479429	0.701278	0.271417	0.531078	0.646536	0.255451	1.23276	0.288524	0.404005	0.500426	0.971451	0.478945	0.318853	0.331132	0.816706	0.730376	0	0.184446	0.764465	0.533305	0.695308	1.35659	0.549704	0.49976	0	0.689092	0.657392	1.05238	1.86245	1.35539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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