TCONS_00015073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015073
Unique NameTCONS_00015073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015073 ID=TCONS_00015073|Name=TCONS_00015073|organism=Clytia hemisphaerica|type=transcript|length=547bp
CAGGTAGGTAGGTTCCAAGGTTTAGATCCTGTACAATATCAATTAAATCC
TCAGTATAAATGTTGTAGAGATATGGTGAGAGGAGCGATCCCTGTCGAAC
TCCTTGTGAAAGATCGAAGGGATGAGAGGTGTTACTCCTATATCTTGTGG
CTGCTTCACTGTTGACGTAAAGTTTGattagaaatttcaaaacaatttca
ggcAAAAGGTTTTTgcttttcagtttttcaaatAGGAGTAGCCAGTTGCA
GCAATCGAAGGCTTTTTCAGCATCAAGACTGCATATATATACTGGTGTGT
TTTTGGCATTGTAATACGAGATAGTGTCTCTGATGAGAAGCTCCGCATGG
ACGGTAGACGCGTCAGATGTAAATCCAAATTGAgagtttttgtggttttt
caGTGAGGGACATTTGTTTATGATTAGTTTCTCCATGATTTTAGTGAGTA
TTGGGATCACGCTGATTCCACGGTAGTTGTTTGGATCTTGGATTGGTTTT
TTGCTTGATTTCATAATTGGGACGATGATCGATGTTGATAATGCCGG
Run BLAST on NCBI

protein sequence of TCONS_00015073-protein

>TCONS_00015073-protein ID=TCONS_00015073-protein|Name=TCONS_00015073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
PALSTSIIVPIMKSSKKPIQDPNNYRGISVIPILTKIMEKLIINKCPSLK
NHKNSQFGFTSDASTVHAELLIRDTISYYNAKNTPVYICSLDAEKAFDCC
NWLLLFEKLKSKNLLPEIVLKFLIKLYVNSEAATRYRSNTSHPFDLSQGV
RQGSLLSPYLYNIYTEDLIDIVQDLNLGTYLP
Run BLAST on NCBI

transcript from alignment at sc0000203:4935..5481

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015073 ID=TCONS_00015073|Name=TCONS_00015073|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0000203:4935..5481 (Clytia hemisphaerica)
CCGGCATTATCAACATCGATCATCGTCCCAATTATGAAATCAAGCAAAAA
ACCAATCCAAGATCCAAACAACTACCGTGGAATCAGCGTGATCCCAATAC
TCACTAAAATCATGGAGAAACTAATCATAAACAAATGTCCCTCACtgaaa
aaccacaaaaactcTCAATTTGGATTTACATCTGACGCGTCTACCGTCCA
TGCGGAGCTTCTCATCAGAGACACTATCTCGTATTACAATGCCAAAAACA
CACCAGTATATATATGCAGTCTTGATGCTGAAAAAGCCTTCGATTGCTGC
AACTGGCTACTCCTatttgaaaaactgaaaagcAAAAACCTTTTgcctga
aattgttttgaaatttctaatCAAACTTTACGTCAACAGTGAAGCAGCCA
CAAGATATAGGAGTAACACCTCTCATCCCTTCGATCTTTCACAAGGAGTT
CGACAGGGATCGCTCCTCTCACCATATCTCTACAACATTTATACTGAGGA
TTTAATTGATATTGTACAGGATCTAAACCTTGGAACCTACCTACCTG

Coding sequence (CDS) from alignment at sc0000203:4935..5481

>TCONS_00015073 ID=TCONS_00015073|Name=TCONS_00015073|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000203:4935..5481 (Clytia hemisphaerica)
CCGGCATTATCAACATCGATCATCGTCCCAATTATGAAATCAAGCAAAAA
ACCAATCCAAGATCCAAACAACTACCGTGGAATCAGCGTGATCCCAATAC
TCACTAAAATCATGGAGAAACTAATCATAAACAAATGTCCCTCACtgaaa
aaccacaaaaactcTCAATTTGGATTTACATCTGACGCGTCTACCGTCCA
TGCGGAGCTTCTCATCAGAGACACTATCTCGTATTACAATGCCAAAAACA
CACCAGTATATATATGCAGTCTTGATGCTGAAAAAGCCTTCGATTGCTGC
AACTGGCTACTCCTatttgaaaaactgaaaagcAAAAACCTTTTgcctga
aattgttttgaaatttctaatCAAACTTTACGTCAACAGTGAAGCAGCCA
CAAGATATAGGAGTAACACCTCTCATCCCTTCGATCTTTCACAAGGAGTT
CGACAGGGATCGCTCCTCTCACCATATCTCTACAACATTTATACTGAGGA
TTTAATTGATATTGTACAGGATCTAAACCTTGGAACCTACCTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008435XLOC_008435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015073-exon-sc0000203-1491911889:4935..5481TCONS_00015073-exon-sc0000203-1491911889:4935..5481Clytia hemisphaericaexon
TCONS_00015073-exon-sc0000203-1510915933:4935..5481TCONS_00015073-exon-sc0000203-1510915933:4935..5481Clytia hemisphaericaexon
TCONS_00015073-exon-sc0000203-1575043694:4935..5481TCONS_00015073-exon-sc0000203-1575043694:4935..5481Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015073-proteinTCONS_00015073-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:4935..5481 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88935	0.716493	2.13922	0.813901	1.98169	1.34225	1.88926	1.89504	0.0966734	0.438243	1.48879	0.768958	1.32635	0.507475	0.852673	1.91886	0.709163	1.29221	0	0.467037	0.710394	0.742512	0.722096	0.65649	1.46503	2.51444	0.287852	0.614407	0.233003	0.118697
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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