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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015061 ID=TCONS_00015061|Name=TCONS_00015061|organism=Clytia hemisphaerica|type=transcript|length=3058bpRun BLAST on NCBI protein sequence of TCONS_00015061-protein >TCONS_00015061-protein ID=TCONS_00015061-protein|Name=TCONS_00015061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp MDDEFEAETDTKTRRLPKMAKVKNKAPAPVQITAEQLLREAKERQLEIVPRun BLAST on NCBI transcript from alignment at sc0000203:270059..289280- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015061 ID=TCONS_00015061|Name=TCONS_00015061|organism=Clytia hemisphaerica|type=transcript|length=19222bp|location=Sequence derived from alignment at sc0000203:270059..289280- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000203:270059..289280- >TCONS_00015061 ID=TCONS_00015061|Name=TCONS_00015061|organism=Clytia hemisphaerica|type=CDS|length=48321bp|location=Sequence derived from alignment at sc0000203:270059..289280- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015061 vs. Swiss-Prot (Human)
Match: CRNL1 (Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4) HSP 1 Score: 996.112 bits (2574), Expect = 0.000e+0 Identity = 470/658 (71.43%), Postives = 581/658 (88.30%), Query Frame = 3
Query: 99 RRLPKMAKVKNKAPAPVQITAEQLLREAKERQLEIVPPPPKQKITDPAELQEYRLRKRKFFEDQLRKNRTSVSNWLKYAAWEESQKEIQRSRSIYERGLDMNHRCVTIWLKYAEMEMKLRQINHARNIWDRAVTILPRVNQFWYKYTYMEEMLGNIPGCRQVFERWMEWEPEEQAWLSYIKMELRYKEVDRARAIYEGFIMCHPVVKNWIRFARFEEGHGNPGNARIVYERSVEFYGDDNMEEALFIAFARFEENQREFDRVRAIYKYALDKIPKQNAQELFKNYSTFEKRFGDRSGIENVIISKRRFQYEEEVKSNPNNYDAWFDYVRLMESDSEDWQTIRDVYERAISNIPPVHEKKHWRRYIYLWIMYALFEELTAKDAERTRQVYKACLEVIPHKKFTFAKIWIMYAQFEVRQKNLKVARLTLGSSIGKCPKDKLYREYISLELQLREFNRCRKLYEKFLEFNPANCTTWIKYAEMETILGDTSRARSIYELAIAQTLLDMPEVLWKAYIDFEIEQEEFERTRDLYERLLKKTQHVKVWISYAQFEIGTDEEYCVENARTVYRKADQSLRSEEQKEERMLLLEAWRKFEYEKGDSTSQSSIEXXXXXXXXXXXXXESEDQADSGWEEYYDYIFPDEKDNQPNFKLLQMAKMWKQ 2072
+R+PK+AKVKNKAPA VQITAEQLLREAKER+LE++PPPP+QKITD EL +Y+LRKRK FED +RKNRT +SNW+KYA WEES KEIQR+RSIYER LD+++R +T+WLKYAEMEMK RQ+NHARNIWDRA+T LPRVNQFWYKYTYMEEMLGN+ G RQVFERWMEW+PEEQAW SYI ELRYKEVDRAR IYE F++ HP VKNWI++ARFEE H +AR VYER+VEF+GD++M+E L++AFA+FEENQ+EF+RVR IYKYALD+I KQ+AQELFKNY+ FEK+FGDR GIE++I+SKRRFQYEEEVK+NP+NYDAWFDY+RL+ESD+E + +R+VYERAI+N+PP+ EK+HW+RYIYLWI YAL+EEL AKD ERTRQVY+A LE+IPHKKFTFAK+WI+YAQFE+RQKNL +AR LG+SIGKCPK+KL++ YI LELQLREF+RCRKLYEKFLEF P NCT+WIK+AE+ETILGD RAR+IYELAI+Q LDMPEVLWK+YIDFEIEQEE ERTR+LY RLL++TQHVKVWIS+AQFE+ + +E + R +Y +A++++R+ E+KEER++LLE+WR FE E G ++ + ++++MP KVKKRRKV+++D +D+GWEEY+DYIFP++ NQPN KLL MAK+WK+
Sbjct: 171 QRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEA-EAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKK 827 The following BLAST results are available for this feature:
BLAST of TCONS_00015061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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