TCONS_00015014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015014
Unique NameTCONS_00015014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015014 ID=TCONS_00015014|Name=TCONS_00015014|organism=Clytia hemisphaerica|type=transcript|length=627bp
ttaacGAAGCCTATCGTGTTGGTAGCGGCTTGCTTTAAAGTTTTTGCGAT
ATTGTCCCACATAGATTGGTTATCTGCGGACTGATCATTTTTGTTCGCTA
TTGTCGTCATTATCTCGTATTTATAACTGGTTTTGGTTTCTGTATTGTTA
AAGTTTATTACATTGAAGCGTCCCGaaacaatatttttggttttttgctG
GTATTTCCATTTGACGATTATTTTTGCGATAACTGGTTTGTGATCTGACT
TGGTGACTTTGGAGATTGTTGCTTTGGAGTCTAGGGTTCTTGTATTGACG
TTGTTTCTCACAAGGATGTAGTCTATTTGGTTACGGTACGGGTTTCTTCT
GGGACTATTTGTTTTCGAGTCCATAACGTTGGTTATATCGATAGGTGACT
CCCAGGTGGTAAGGTGGATTGGTTTGTGTTTGAAGAAAGTATTTGTAATT
CTGAGGTTATAAAGCATACAGAATTCGATCAGCTTTTCTCCATTAATGTT
TATGTCACTTTTAGCGAATTTACCAACTATTTGTTTGGGTAGGTGTTAGG
TACCGCTCTGGTTTTAGCATTGAAATCACCTCCAATTATGAGGGCTTCTC
TCGCTTTGAAAGTTTTGGTAACGGATG
Run BLAST on NCBI

transcript from alignment at sc0000203:128..867+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015014 ID=TCONS_00015014|Name=TCONS_00015014|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0000203:128..867+ (Clytia hemisphaerica)
ttaacGAAGCCTATCGTGTTGGTAGCGGCTTGCTTTAAAGTTTTTGCGAT
ATTGTCCCACATAGATTGGTTATCTGCGGACTGATCATTTTTGTTCGCTA
TTGTCGTCATTATCTCGTATTTATAACTGGTTTTGGTTTCTGTATTGTTA
AAGTTTATTACATTGAAGCGTCCCGaaacaatatttttggttttttgctG
GTATTTCCATTTGACGATTATTTTTGCGATAACTGGTTTGTGATCTGACT
TGGTGACTTTGGAGATTGTTGCTTTGGAGTCTAGGGTTCTTGAATTGACG
TTGTTTCTCACAAGGATGTAGTCTATTTGGTTACGGTACGGGTTTCTTCT
GGGACTATTTGTTTTCGAGTCCATAACGTTGGTTATATGGATAGGTNGGT
TCTTGTATTGACGTTGTTTCTCACAAGGATGTAGTCTATTTGGTTACGGT
ACGGGTTTCTTCTGGGACTATTTGTTTTCGAGTCCATAACGTTGGTTATA
TCGATAGGTGACTCCCAGGTGGTAAGGTGGATTGGTTTGTGTTTGAAGAA
AGTATTTGTAATTCTGAGGTTATAAAGCATACAGAATTCGATCAGCTTTT
CTCCATTAATGTTTATGTCACTTTTAGCGAATTTACCAACTATTTGTTTG
GGTAGGTGTTAGGTACCGCTCTGGTTTTAGCATTGAAATCACCTCCAATT
ATGAGGGCTTCTCTCGCTTTGAAAGTTTTGGTAACGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008407XLOC_008407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015014-exon-sc0000203-1491911889:128..412TCONS_00015014-exon-sc0000203-1491911889:128..412Clytia hemisphaericaexon
TCONS_00015014-exon-sc0000203-1510915933:128..412TCONS_00015014-exon-sc0000203-1510915933:128..412Clytia hemisphaericaexon
TCONS_00015014-exon-sc0000203-1575043694:128..412TCONS_00015014-exon-sc0000203-1575043694:128..412Clytia hemisphaericaexon
TCONS_00015014-exon-sc0000203-1491911889:526..867TCONS_00015014-exon-sc0000203-1491911889:526..867Clytia hemisphaericaexon
TCONS_00015014-exon-sc0000203-1510915933:526..867TCONS_00015014-exon-sc0000203-1510915933:526..867Clytia hemisphaericaexon
TCONS_00015014-exon-sc0000203-1575043694:526..867TCONS_00015014-exon-sc0000203-1575043694:526..867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:128..867 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594125	0.579365	0.734144	0.752149	1.03013	1.3567	1.9156	1.39016	1.00132	1.1517	2.32172	0.847894	0.903163	1.40692	1.15668	1.36889	1.6882	2.0598	1.4774	1.88826	2.60132	2.83588	0.844097	1.46931	0.546759	0.406641	1.39657	0.621022	1.22466	0.671857
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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