TCONS_00015005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015005
Unique NameTCONS_00015005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015005 ID=TCONS_00015005|Name=TCONS_00015005|organism=Clytia hemisphaerica|type=transcript|length=311bp
AGCCAACTTACGTCTCCCGTATTGGTAAAGAATCCAATCGTACACGACCA
ATCAAAGTTGTATTTAATGGCgggcatgtaaaatacaaatttatgaGAAA
CTTAAGGGAATTGAAGCAGTACGACAAGTACGCCAACATGAGCATCACAG
ACGATTTAACAATAATGGAAAGAGACCAAGTAAAAGAATGGAGAAGTAAA
GCAAACGAGAGAAATCGAGCAATGCCGCAGAGTGATTACAAATGGAGAGT
GCGAGGAAGTCCTCAAGGaggattatatttaaaaaagatattttgtaaaa
caagaTCGGTT
Run BLAST on NCBI

protein sequence of TCONS_00015005-protein

>TCONS_00015005-protein ID=TCONS_00015005-protein|Name=TCONS_00015005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
PTYVSRIGKESNRTRPIKVVFNGGHVKYKFMRNLRELKQYDKYANMSITD
DLTIMERDQVKEWRSKANERNRAMPQSDYKWRVRGSPQGGLYLKKIFCKT
RSV
Run BLAST on NCBI

transcript from alignment at sc0000201:350044..350354

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015005 ID=TCONS_00015005|Name=TCONS_00015005|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0000201:350044..350354 (Clytia hemisphaerica)
AACCGAtcttgttttacaaaatatcttttttaaatataatcctCCTTGAG
GACTTCCTCGCACTCTCCATTTGTAATCACTCTGCGGCATTGCTCGATTT
CTCTCGTTTGCTTTACTTCTCCATTCTTTTACTTGGTCTCTTTCCATTAT
TGTTAAATCGTCTGTGATGCTCATGTTGGCGTACTTGTCGTACTGCTTCA
ATTCCCTTAAGTTTCtcataaatttgtattttacatgcccGCCATTAAAT
ACAACTTTGATTGGTCGTGTACGATTGGATTCTTTACCAATACGGGAGAC
GTAAGTTGGCT

Coding sequence (CDS) from alignment at sc0000201:350044..350354

>TCONS_00015005 ID=TCONS_00015005|Name=TCONS_00015005|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000201:350044..350354 (Clytia hemisphaerica)
AACCGAtcttgttttacaaaatatcttttttaaatataatcctCCTTGAG
GACTTCCTCGCACTCTCCATTTGTAATCACTCTGCGGCATTGCTCGATTT
CTCTCGTTTGCTTTACTTCTCCATTCTTTTACTTGGTCTCTTTCCATTAT
TGTTAAATCGTCTGTGATGCTCATGTTGGCGTACTTGTCGTACTGCTTCA
ATTCCCTTAAGTTTCtcataaatttgtattttacatgcccGCCATTAAAT
ACAACTTTGATTGGTCGTGTACGATTGGATTCTTTACCAATACGGGAGAC
GTAAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008398XLOC_008398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015005-exon-sc0000201-1491911889:350044..350354TCONS_00015005-exon-sc0000201-1491911889:350044..350354Clytia hemisphaericaexon
TCONS_00015005-exon-sc0000201-1510915933:350044..350354TCONS_00015005-exon-sc0000201-1510915933:350044..350354Clytia hemisphaericaexon
TCONS_00015005-exon-sc0000201-1575043694:350044..350354TCONS_00015005-exon-sc0000201-1575043694:350044..350354Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015005-proteinTCONS_00015005-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:350044..350354 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.06805	4.5169	3.39591	1.55995	1.55907	2.18752	2.67973	5.79078	3.76653	2.56594	1.68761	3.86938	2.53206	1.80539	2.43435	0.623112	1.04403	1.42539	5.56349	2.94743	1.93304	4.64125	2.84216	2.96895	4.48898	2.63494	2.34537	0	10.5796	10.6689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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