TCONS_00014906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014906
Unique NameTCONS_00014906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014906 ID=TCONS_00014906|Name=TCONS_00014906|organism=Clytia hemisphaerica|type=transcript|length=1209bp
GGTCTGAGAGATTGTACGTGAGCTGGATAAATAGTCATTTTGAGTGACTG
ACGCACGGAGGATATTCGACATATTTCGTATAATTtttaggctgcatgca
tccccaaattagttttgatatatcaaaacttatcagaggggatgtgtgca
gcctatataatttttgaagaaaataatttcaaatttttagcaattgaaga
agaaaattaactttttattcTTTGAAGCTAGAAAGTTCAAAAGGCTCAAA
ATATTAGTGTTcttaattatcttttcaacaataaATAATATGTTGGAAAT
TGAAGCATTGGTTAACAAAGGGCAAGCAAAAGAATGGAAGAATTAATGAA
TAACTTTAATATTGATGCTAATGaaTTCGCAAAATCTAACAGGTATATTT
CACTAACCAAATCAAAGAGTTTGGATCGAGGTACTGACTACCCAAGAACA
CGACGAAAAAGACTGGCCAACATGAATATACCCTCAATTTCTTTAGAAGA
ACTGACCATAGATAAAAGACCTGGCCTCACCAAGCAACGAAGTTTAAATG
GAGATTTTACAGAATCAAGATGTCTATTTGACGGAATGAATTTTATCAAC
AAATCACCTAGTCACAAACCAGATTCAAATTTGCCCGCTTGGATGCAAGA
AGCGGCCGAACAAGACACTGAAGCGACCGCGCGACAAGAAGAAATGCATT
GTTGCGAAGAAAAatacgaagaagaagaaaaacgcTCAATGGAGacTTTA
TCAACGAAACTTGCGATACCCGAGATCAACTGGGACAAACTGAAcgaaga
gaaaaataaaacgaATAAATTACTATCAGAACAACGGAAAGCcctgaata
aagaaaaaacgAAAGCTTCATCAAGGAGGCGGAGGAAATTAACGCCCTCG
GAATCGCCCTCTCAAGATTCACTTGaaaaactaaaatcatccttcaaaac
aaaatcagaAGAATGGACTCTAAcggaagaagatgaagaagaagaaaatt
tatgataatttatgataaattattttctaCCTTTTTCTCTTTAGATGTTA
TATTTTATTGCCACTGCCTGGTTTATTTTGTTTCGTACCCTCATCATTAT
ATTTTTATggttttttaaagcattttattCTGTAGTTATAGAAGAGTAGA
GAATTTTGTTGAAAGGATTCGAAGGGCCAGAAATCTTGTTAACACAAAGT
TGTGTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000200:367764..374834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014906 ID=TCONS_00014906|Name=TCONS_00014906|organism=Clytia hemisphaerica|type=transcript|length=7071bp|location=Sequence derived from alignment at sc0000200:367764..374834- (Clytia hemisphaerica)
GGTCTGAGAGATTGTACGTGAGCTGGATAAATAGTCATTTTGAGTGACTG
ACGCACGGAGGATATTCGACATATTTCGTATAATTTTTAGGCTGCATGCA
TCCCCAAATTAGTTTTGATATATCAAAACTTATCAGAGGGGATGTGTGCA
GCCTATATAATTTTTGAAGAAAATAATTTCAAATTTTTAGCAATTGAAGA
AGAAAATTAACTTTTTATTCTTTGAAGCTAGAAAGTTCAAAAGGCTCAAA
ATATTAGTGTTCTTAATTATCTTTTCAACAATAAATAATATGTTGGAAAT
TGAAGCATTGGTTAACAAAGGGCAAGCAAAAGAATGGAAGAATTAATGAA
TAACTTTAATATTGATGCTAATGGTTTGTATTTTAGCCTAGAAAAGGTTT
TGTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTCTAATTCA
AAAGCTTTTTCACATTGGATTGATACGGATGTAGAGCAAGATTGATCAGA
AAGAAGAAAAGAAAAGCATTTTTTTGCTTATATCAGCATAATATAACAAT
AGCAAGATACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGAATT
ACTTATGTAAAAATAAAACCTTTAAATTGGGGAACATAGGATCATTCCAA
ATCCAAGCACGAGTAATGTCAACAATATCATCTTGCAAAATCCAAATTAG
CCTGTCTTTAAAACACTATCTTGCACCAATAGTGCTCTCAATGACCACTT
ATTGTTTGAAAGATTCATCCAACCATTTATCATATGCCTCAAAAAGAGAA
TTGAATAATAACAGTTCTTTTCTAAGTTTCATGATGTCATAAGCCTTCAT
GCTATTATAATGAATACGGTTTGTGGCCCGTGGAGGTCCTCTCAACTGGA
AAATCCCATGGTTTTTCTTGTTAACATGATCTAGTATTGTAAGTGTGGGA
GTTGGATATCAATAGAGAATTGGATATTTTGTTTGCTGGTTGAGCAGTAT
GATGTGTCATACTGTGAGACAATTATCTGTGATTTTATTAATGTTATTTG
ATGACTTATGTATCATTTTTCATTCGCGCTGGAAATATTTGTGATTCTTG
CAGAGAATTGGAGAGAGGTGTTTATATATAACGAGATCCGAAGATTTTTT
ACAAACTCTTGAGATCTTTCGGGGAATTCTGGTACAGTGTACAATATTTG
GCAATAGCCACCATTCGTATATCAAAGATTTTTATTAAAGAGATCAGATC
TTCAAGTGGAGCTTATATCTGATACAAAATATTTTCCTCAATTTGGCTGC
ATAAGATTTGATATATAAGAGCTGATGTTTTGTTACAAATATTAGTTTTA
GCCAGTTTACTTATAAAATGAGGGGGATACACTTTCGCCCACNAAGAGCT
GATGTTTTGTTACAAATATTAGTTTTAGCCAGTTTACTTATAAAATGAGG
GGGATACATTTTCGCCCATAAACTCTCACGACTATTTATCTCTTCTTGTG
GGTTTTCTTAAATTCGTTTAAACTCGATGTTTGTTAAAGAATAATATTGA
AAGCGAAGAGTGTATTGGTTTTCAGTGTGATAAAATCGCTCTCTCAACCT
TTGTGATTTACATAGTCATAGTCTTTATGTGGCTTTCTTGGTTTGGTTGT
TTTCTTGTAAAATTTTATGGCTTCGAAAATGTTTAAACGTTTTTTCCTAA
TATATAAAAATGTAACCATAAAAGAAATATATTTTTTGGAAAATCAAATA
GTTCACTACAGTGTGTATATTGATTGATATCTTGATTCTTTGAGATGTTT
TTCTAAATTGCTTAAGCTCTCTGTATGGTATAATACCTCTCAACAGAAAT
TCTGTTGCTATTTTTGTTTCTGTTTTGAGATTTTTTTTAAACAAACATGC
TGGGATAAGCGTACTAGGGTTTGGGGACGCTGAGTTTGTAATTCAAATAT
TAAACCGAGATTCGAAAATAGGAAGTACGCACCCCCTTTTCACAGACCCA
CTGGAAAGATTGGACAAAATATCGTCCCCGGTAGAAAATTATCTTCCACT
TTTTGTCCCCACTGAAAATAATCAAATAAGCCGATCCTCACTGCAAAATA
TCATGCTATTTTTCCCATACCCATTGAATTTTCTGACTTGAGAACAAAAG
AATTGAAACCCCCATTCGTAAAAAATATGTGAATATTAATTCCCATCGAG
GTTTAGTCCGTTATTTTTATCCCCACTGGTTGAAAAAATTCCTACCGGAT
CTGTGAGAAGGGGGTGTAAGTATTTTATGACATTTTTTGCTGATGCAGTA
AGGTATAGTTCGAATTATTGAAAAGATTGCAGTGATAGAAGTTCGAATTA
GCGTGTGTCTGATATTTTAACGGCTTTACAATCTTTAACAAGTCTATAAA
AAAAAGTTGCGTGTATCTTGTGATGATGAATTTGGATGATATTTACTCGT
CAAAAATTTGGTCGTTATGGTATAGGGGAAGTTTGTTAAACATTTCATAA
CATATCAAAATGATATCTCAACATTTTCGAAATGAAGACATAGGGAACGT
AAATCTGACGTCATAACTTCTGAATTTCTGAAAAGGCTGATTCAGCAAAA
TTGATTCATTTTTGGAGCCATGAGTGTCAGAATATTGTGGTGTTATACTG
TGCTGAGGGGTGTGATGTGTTATTGGCAGACAGAGCTCTTATTTGGGATT
TGAGGAATGAAGTTAACGAAAACGTTATATGTAGTTGTATTTTCTCCGTT
TTGGTCGAGAGCTATTTTAGCATTTATTCGTGTACTTCAAATCTGACGAT
TGATATGATATGTTTAAATGCATAAACAAGGGTACATGCGTATCCAAAGT
TTTTTATTCGGCGTAAGTTCGGCAGAGTGTTATATCTGAATCACGTGGGC
TTTGAATTCTAGAATTATAGACACATTATGTCTGTATCTACGTCAAAAAG
AGTTTAAAACCAGCTTTTCATTGCCGTTATTTTATTTGTACCAAAACATT
TGTCCAATTCTCATGGCACAAGCAATCAATTTTGAAACTCAAAAAAATTT
GAAGTTCTGTTTGAAGTGATTGTGTTTGTTGTATTGTTTTGTTACATATG
AAACTTTTTCACTTTTTTATTTTACAGAATTCGCAAAATCTAACAGGTAT
ATTTCACTAACCAAATCAAAGAGTTTGGATCGAGGTACTGACTACCCAAG
AACACGACGAAAAAGACTGGCCAACATGAATATACCCTCAATTTCTTTAG
AAGAACTGACCATAGATAAAAGACCTGGCCTCACCAAGCAACGAAGTTTA
AATGGAGGTATATACTGACAATTTAGTTATTTCCTTATTATGTTTTAAAA
GTTTCTTTGATTTATTTATGATTTACATACAGTAGAGAGACTAGGACTTT
TTATAAATTACTTAACAAACAACCCTTGTCATGCAGTAGCGTGGTGGGTC
GACAAAAATTCGGGCAAACTGGGGAGGCAAATTTTGAATATTATGATTTT
GGCGCCCCCTTTGAAACATAAATAGCTTTGTAAATATTATGCGAGCGAAG
CGATCACAGGGTATTTTCTCTCTTTTTGGCCGAAAACTGCCATATCTAAG
GTGTAAAAGAGCAAAGGGGCGCCGTAAATTAGAAAAAATCGGCCACGCTA
CGGCTGTCATGTCCTGCCTCGTTTTTAGACCATTACCATTGGGTGATTAT
TCTTTTTAATGGAAAGAATCTACCTCAAAGAAATTTGTTGGGAATGAGTT
GCCATAGCATTATTTCAAAAAGGAGGTACCAATTTTTACTGGTATCTTTT
AAGAAAAGGTCTTGAACGACGCAACTTGGAAATTTCTAACGATTTTTTGA
CGATTTTTCTGTTCTTTTTTTGTTAGATTTTACAGAATCAAGATGTCTAT
TTGACGGAATGGTGAGTGTGTTTATTATTTCAATAATTTATTTGCGAGAA
ATTTTCGTCATGAAAATACTCATTTAAGGCCCCATTTAAATCAGGGAAAG
AGCATCCTTTTGTTAGTTTAATGGACAAAAAGGAAGAGTGGTTTTAATGA
AAGTGCATGAATATAAAATCTTTAAAACCTCGGAGACAGGAAATATTTCT
ATCCTGAAAGCCTATGTTTGTTTCTTCTTAACCAATAGAAACTACTATAA
AATCTTCCGTAACGTTTCAAGAACATAAATTTTAAAAATTAATGATGCAT
TCTCTATACTGTTTATTTAAAGACGAGGTTTCACAGGATTATGTTTCGGG
CTTCCTTTTGAATACACAGGACTATATAAAACCCAATATTTCTAGAAAGA
CTGATAAATGACGTGTAGAAAACAGGAAAGAAAATTCTGTTTTTTGGAAA
ATAATTATTATTTGTGAGTTAGTCCTATAAAACACAAGATTAAGAAACAA
ATTGGAATTAGCAATTGTTTTTATTCTTCTCTACAGAATTTTATCAACAA
ATCACCTAGTCACAAACCAGATTCAAATTTGCCCGCTTGGATGCAAGAAG
CGGCCGAACAAGACACTGAAGCGACCGCGCGACAAGAAGAAATGCATTGT
TGCGAAGAAAAATACGAAGAAGAAGAAAAACGCTCAATGGAGGTACGTAT
GACCTTAATTCAGATGTCGAAAATATTTGTTTGTTTATCAAATTTTGAAA
ATACCATGTCCACCTATCATGTCCGTTAACTTTTAATTTCGGGGCACTGT
CTCTTCTCTTCAGAAATGAAGGAAAACTGTTTTGATAAGCGGTGGTGTGT
ATCCACCGGTGCGTTGGGTGGTTCAAGATATTGATTTATTATTGATATAA
GCTGAAATATCATTCTTATATATTCTAATGTTTTTCTTTTAGACTTTATC
AACGAAACTTGCGATACCCGAGATCAACTGGGACAAACTGAACGAAGAGA
AAAATAAAACGAATAAATTACTATCAGAACAACGGAAAGCCCTGAATAAA
GAAAAAACGGTTAGTTCAAATGCTTTTAACATCATTTTATCTACCTTTGC
TTAGTGAAGCCCCATACAGGAATGATCAGTTGTCAGTCTCTTCTAAACAT
GCACTAGACGATCCTATCGTCTACACAAAATCACTAAAAAGGGAATAAGT
TAGGGGGCGCGCGGGATAAATTTGAGAATGGCTGTAAGCGCCCTGGTTGG
AGGTGTTTTCAGTTACAGTATGGTCCAAACTCTACCGCCACTTTTTTCCC
GTAAACCGCCCTCACGCCCTGACTCTGCGCATATATACTTTCCCGCGTTT
ACTGACCCTCTAACGATATCAACGTCTAAGCTTGGACTCTAGCATGGAGT
TAAACTTTCTAAAACCCTGTTCGTTTGTGGGGATTTCAAATTCTCTATTG
TTTGCCGCTCAAAAANAAGCGGCCGAACAAGACACTGAAGCGACCGCGCG
ACAAGAAGAAATGCATTGTTGCGAAGAAAAATACGAAGAAGAAGAAAAAC
GCTCAATGGAGGTACGTATGACCTTAATTCAGATATCGAAAATATTTGTT
TGTTTATCAAATTTTGAAAATACCATGTCCACCTATCATGTCCGTTAACT
TTTAATTTCAGGGCACTGTCTCTTCTCTTCAGAAATGAAGGAAAACTGTT
TTGATAAGCGGTGGTGTGTATCCACCGGTGCGTTGGGTGGTTCAAGATAT
TGATTTATTATTGATATAAGCTGAAATATCATTCTTATATATTCTAATGT
TTTTCTTTTAGACTTTATCAACGAAACTTGCGATACCCGAGATCAACTGG
GACAAACTGAACGAAGAGAAAAATAAAACGAATAAATTACTATCAGAACA
ACGGAAAGCCCTGAATAAAGAAAAAACGGTTAGTTCAAATGCTTTTAACA
TCATTTTATCTACCTTTGCTTAGTGAAGCCCCATACAGGAATGATCAGTT
GTCAGTCTCTTCTAAACATGCACTAGACGATCCTATCGTCTACACAAAAT
CACTAAAAAGGGAATAAGTTAGGGGGCGCGCGGGATAAATTTGAGAATGG
CTGTAAGCGCCCGGGTTGGAGGTGTTTACAGTTACAGTATGGTCCAAACT
CTACCACCACTTTTTTCCCGTAAACCGCCCTCACGCCTTGACTCTGCGCA
TATATACTTTCCCGCGTTTACTGACCCTCTAACGATATCAACGTCTAAGC
CTGGACTCTAGCATGGAGTTCTAAAACCCTGTTCGTTTGTGGGGATTTCA
AATTCTCTATTGTTTGCCGCTCAAAAGCCTGGTTTGAATGAGAGTCCTAC
CAACAAGGTTTAAATTTCAGGGTTTTATAGTTATCATGAATTCTGTCGAT
ATTCCTAAAGGTCTGGATGGGGATGTTCATAGATAAGAATCTAAAATTGA
TATTTGGTCGAACTTTAATGCTAATTTTCACTTGTCCTTTTAGAAAGCTT
CATCAAGGAGGCGGAGGAAATTAACGCCCTCGGAATCGCCCTCTCAAGAT
TCACTTGGTAAGTTCATTTCTTGTCCGTGAGATATGTTTCCAGCCGTTTG
GCAGCACGTTGTTTCGACGTTCATCTAAATTTAGATGGACGTTAGATGTC
TGTTGGGTATTCCTTCTAAATGTTGTAAAGCCTTTGGAAATTGAAAAGTG
GAATGTTGATTTTTATCTGATGAATATTATGGATATACTTGGATCGACAG
TACTGAGAATTATCCTTTACCCAAGCAAGTTTTTCTATATTATTGATCTG
GATAGACTAGACCTAGCCAAAGGAAATACAACTGCAAGCTTCAATTAACG
TGGTGGGTTGTATAAACCTGATCTTTTCTATGTTTAGAAAAACTAAAATC
ATCCTTCAAAACAAAATCAGAAGAATGGACTCTAACGGAAGAAGATGAAG
AAGAAGAAAATTTATGATAATTTATGATAAATTATTTTCTACCTTTTTCT
CTTTAGATGTTATATTTTATTGCCACTGCCTGGTTTATTTTGTTTCGTAC
CCTCATCATTATATTTTTATGGTTTTTTAAAGCATTTTATTCTGTAGTTA
TAGAAGAGTAGAGAATTTTGTTGAAAGGATTCGAAGGGCCAGAAATCTTG
TTAACACAAAGTTGTGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008334XLOC_008334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014906-exon-sc0000200-1575043694:374462..374834TCONS_00014906-exon-sc0000200-1575043694:374462..374834Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:371528..371707TCONS_00014906-exon-sc0000200-1575043694:371528..371707Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:370924..370958TCONS_00014906-exon-sc0000200-1575043694:370924..370958Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:370243..370398TCONS_00014906-exon-sc0000200-1575043694:370243..370398Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:369876..369992TCONS_00014906-exon-sc0000200-1575043694:369876..369992Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:368378..368441TCONS_00014906-exon-sc0000200-1575043694:368378..368441Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1575043694:367764..368047TCONS_00014906-exon-sc0000200-1575043694:367764..368047Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:374462..374834TCONS_00014906-exon-sc0000200-1510915933:374462..374834Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:371528..371707TCONS_00014906-exon-sc0000200-1510915933:371528..371707Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:370924..370958TCONS_00014906-exon-sc0000200-1510915933:370924..370958Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:370243..370398TCONS_00014906-exon-sc0000200-1510915933:370243..370398Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:369876..369992TCONS_00014906-exon-sc0000200-1510915933:369876..369992Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:368378..368441TCONS_00014906-exon-sc0000200-1510915933:368378..368441Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1510915933:367764..368047TCONS_00014906-exon-sc0000200-1510915933:367764..368047Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:374462..374834TCONS_00014906-exon-sc0000200-1491911889:374462..374834Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:371528..371707TCONS_00014906-exon-sc0000200-1491911889:371528..371707Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:370924..370958TCONS_00014906-exon-sc0000200-1491911889:370924..370958Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:370243..370398TCONS_00014906-exon-sc0000200-1491911889:370243..370398Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:369876..369992TCONS_00014906-exon-sc0000200-1491911889:369876..369992Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:368378..368441TCONS_00014906-exon-sc0000200-1491911889:368378..368441Clytia hemisphaericaexon
TCONS_00014906-exon-sc0000200-1491911889:367764..368047TCONS_00014906-exon-sc0000200-1491911889:367764..368047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:367764..374834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.248356	0.298529	0.358556	0.546769	2.54307	2.22393	6.62359	7.20705	1.43399	1.64097	0.834149	1.12714	8.79964	5.34942	2.32817	3.83753	4.53457	6.33405	5.76882	7.05703	8.71091	8.23513	3.50325	4.51189	7.94457	8.24336	24.1796	15.8526	6.60633	5.65332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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