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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014902 ID=TCONS_00014902|Name=TCONS_00014902|organism=Clytia hemisphaerica|type=transcript|length=3912bpRun BLAST on NCBI protein sequence of TCONS_00014902-protein >TCONS_00014902-protein ID=TCONS_00014902-protein|Name=TCONS_00014902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=731bp MPVQNLSLKPSAQSLFSRGLPQHIDTPRTAVSSIISSGSETEKKIESLNNRun BLAST on NCBI transcript from alignment at sc0000200:327206..351636- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014902 ID=TCONS_00014902|Name=TCONS_00014902|organism=Clytia hemisphaerica|type=transcript|length=24431bp|location=Sequence derived from alignment at sc0000200:327206..351636- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000200:327206..351636- >TCONS_00014902 ID=TCONS_00014902|Name=TCONS_00014902|organism=Clytia hemisphaerica|type=CDS|length=30744bp|location=Sequence derived from alignment at sc0000200:327206..351636- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014902 vs. Swiss-Prot (Human)
Match: PSB1 (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2) HSP 1 Score: 285.804 bits (730), Expect = 1.366e-87 Identity = 129/217 (59.45%), Postives = 171/217 (78.80%), Query Frame = -2
Query: 261 PKEHRFNPYSFHGGTVLGIAGEDYAVIASDTRLSEGFYIHSRNLPKTYQLTGSAILGSCGFHGDVLALIKNIKARITMYKHEHSKDMSPTAIAQMLSTMLYYKRFFPYYTYNILAGIDSEGKGAIYSYDPVGSYEREKFRAAGSSSSMLQSFLDNQIGEKNQKFKSGESLSKEKCVALVKDIYISAAERDIETGDAVEICIITKEGVQKEVFPLRRD 911
P + RF+PY F+GGT+L IAGED+A++ASDTRLSEGF IH+R+ PK Y+LT ++G GFHGD L L K I+AR+ MYKH ++K M+ AIA MLST+LY +RFFPYY YNI+ G+D EGKGA+YS+DPVGSY+R+ F+A GS+S+MLQ LDNQ+G KN + LS ++ + LVKD++ISAAERD+ TGDA+ ICI+TKEG+++E LR+D
Sbjct: 25 PLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241 The following BLAST results are available for this feature:
BLAST of TCONS_00014902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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