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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014873 ID=TCONS_00014873|Name=TCONS_00014873|organism=Clytia hemisphaerica|type=transcript|length=1955bp
ttttgttaaaaaattaatgttttttttttatttagctGGGTTACCAATGT
TTTCCCTAGGAAAATAGTTCAAAAGATcataaaaaacatataaaatgtTT
AAATATATTCTATTCATAGTTTTCTAAAGGTAATAGTTCGAATCCATTAT
GATCATTGTTCAAGTGAAATTACAGTGTTGTTGGAGATTTTCATAATCGA
GTTGTGTACGTGAGTGGAGATCACTCGACATAACGTTGAAGTCAAAAAAA
TCAGCGTGTGAGAGACTCATTTCCATGTTGGCTTGAGGTAAGGAATGCAT
GAAGAAGACAGGCCTTGCGTTTCCGCCTTGGAGGAAATCTTCATAATCAT
ACCACGTCCAGAGGCTAGTTGAGTTTGGGAAGTTTGGTAGGTGTGGTGAG
AAAGTGAGGTGAACGATGGCGACTTTTCTATTGCTGCCAGTTAATGGGGA
TACCCAGGTAGATGCTGTATCGTTTGTTGGGANGGTGAACGATGGCGACT
TTTCTATTGCTGCCAGTTAATGGGGATACCCAGGTAGATGCTGTATCATT
TGTTGGGAATTCAATTATCCCCATTATCTTGGCTTGGCCAAGCTGTGGCC
ACCATGGTGGATGTTGAGACATTGGTTGATCTCCATCGAGCATTTTTTCA
CAAGATGTTTTCCAGCTGTCTATCGAGGTCTTTGTCAAGTAGGCGACGCC
GTCACGTTTTTCGATGCCGTCCCAATGTCCAAAGACGTCAGAACGGATTG
TTTCAAGTCTATCTGCTTGATTGTAGTCGTTGTAAAAGATAGTACTTTTT
GATCGATCAAATGGATTGCCAGTGTAGTTTGCATCGTTTTTCCAATGATA
ATACACTTTAGCTGGGTACGGGTTATGAGAATACTCAACAGGGATCTTTA
AGGCAGACATTGAGAAATGATGTGTCCAATTGAACATTGGCCAATCATGT
AAGTTCCCACATTTGAATCCAGTAATAGGTATGCCATTGAGATGAAGATC
CTCAATCTCAGTGAAGTGGTCCTCAAATGTGGCAATATAGGATAAGGAGA
ACATTTGAAATAATGCCAGGTTTTCAGGATCACCTTTTACATTGGATGGT
GGTGGTGCTGAAAACAATAAACGGAAAGGTAGTCCGTTGTTTTTCCGATC
AAACCATTTCCATGTTGAAGtgtttttgttattctttttccACCAATCAA
CATCGACTTCATTACTCATCCAATTCATTGGTGAATGTCCAACATATTCT
TCTTGTGGACCAATCCAATCTCTTGATGGTAAACTCCAACCTAGATCAAC
GTCTGTCCAATCGGTACCATTTCTAGACATTCTAGTGAGATTGCTGTTCC
CAGAGATTTGAAACCACCAGCTTTGCTTTTCACAATTGATTAAAAGGACA
TTCATTAAGGCTCTGTGTACATCGTAGGAAATTTTGGCATGACCAATCTT
GCTGAATGGGAAATCTTTTTCAGCACCATCTCCTTGAGCTTCAGCGAATG
GATGGAGCAAAGCGAATGCTGTCCATGATTCTGGAAGAGGCTTTCGTACA
GGTTCCTCATCAGTTACGATTTTCGGTATATGTAGTGGTGGGATAGCTTT
ATGACTACATTCTCCAGCAGACAGATATTCAGTTAAGGTATCTGGATCAA
CGTTAGGAGTAATCACATTTATAAGATATGTGACACCTTCAGTTGCACCA
GCTTCGATATGGGGTTGCCATTTGGGGATAAAAACCTGGTCACCAGGGTA
TGAAAAGATGGGTTTTACAATGTCATGTGTTTTTAACATGAAACGTCCTT
TCAATACAGTGTATTGGAAGCTGACTGGGTGTCGCTGGCATCGATGTCCC
CGACTACCTCTCAAGGCGACCATCCTAATCACCATCTCATCTGTGATAGC
GATGGTAAAAGTTGCCCGATCAAGTCCGGTCTTTTCTAGTTTACGGTCCA
GGATT Run BLAST on NCBI transcript from alignment at sc0000200:51186..53200- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014873 ID=TCONS_00014873|Name=TCONS_00014873|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0000200:51186..53200- (Clytia hemisphaerica)
TTTTGTTAAAAAATTAATGTTTTTTTTTTATTTAGCTGGGTTACCAATGT
TTTCCCTAGGAAAATAGTTCAAAAGATCATAAAAAACATATAAAATGTTT
AAATATATTCTATTCATAGTTTTCTAAAGGTAATAGTTCGAATCCATTAT
GATCATTGTTCAAGTGAAATTACAGTGTTGTTGGAGATTTTCATAATCGA
GTTGTGTACGTGAGTGGAGATCACTCGACATAACGTTGAAGTCAAAAAAA
TCAGCGTGTGAGAGACTCATTTCCATGTTGGCTTGAGGTAAGGAATGCAT
GAAGAAGACAGGCCTTGCGTTTCCGCCTTGGAGGAAATCTTCATAATCAT
ACCACGTCCAGAGGCTAGTTGAGTTTGGGAAGTTTGGTAGGTGTGGTGAG
AAAGTGAGGTGAACGATGGCGACTTTTCTATTGCTGCCAGTTAATGGGGA
TACCCAGGTAGATGCTGTATCGTTTGTTGGGANGGTGAACGATGGCGACT
TTTCTATTGCTGCCAGTTAATGGGGATACCCAGGTAGATGCTGTATCATT
TGTTGGGAATTCAATTATCCCCATTATCTTGGCTTGGCCAAGCTGTGGCC
ACCATGGTGGATGTTGAGACATTGGTTGATCTCCATCGAGCATTTTTTCA
CAAGATGTTTTCCAGCTGTCTATCGAGGTCTTTGTCAAGTAGGCGACGCC
GTCACGTTTTTCGATGCCGTCCCAATGTCCAAAGACGTCAGAACGGATTG
TTTCAAGTCTATCTGCTTGATTGTAGTCGTTGTAAAAGATAGTACTTTTT
GATCGATCAAATGGATTGCCAGTGTAGTTTGCATCGTTTTTCCAATGATA
ATACACTTTAGCTGGGTACGGGTTATGAGAATACTCAACAGGGATCTTTA
AGGCAGACATTGAGAAATGATGTGTCCAATTGAACATCGGCCAATCATGT
AAGTTCCCACATTTGAATCCAGTAATAGGTATACCATTGNCGAACATTGG
CCAATCATGTAAGTTCCCACATTTGAATCCAGTAATAGGTATGCCATTGA
GATGAAGATCCTCAATCTCAGTGAAGTGGTCCTCAAATGTGGCAATATAG
GATAAGGAGAACATTTGAAATAATGCCAGGTTTTCAGGATCACCTTTTAC
ATTGGATGGTGGTGGTGCTGAAAACAATAAACGGAAAGGTAGTCCGTTGT
TTTTCCGATCAAACCATTTCCATGTTGAAGTGTTTTTGTTATTCTTTTTC
CACCAATCAACATCGACTTCATTACTCATCCAATTCATTGGTGAATGTCC
AACATATTCTTCTTGTGGACCAATCCAATCTCTTGATGGTAAACTCCAAC
CTAGATCAACGTCTGTCCAATCGGTACCATTTCTAGACATTCTAGTGAGA
TTGCTGTTCCCAGAGATTTGAAACCACCAGCTTTGCTTTTCACAATTGAT
TAAAAGGACATTCATTAAGGCTCTGTGTACATCGTAGGAAATTTTGGCAT
GACCAATCTTGCTGAATGGGAAATCTTTTTCAGCACCATCTCCTTGAGCT
TCAGCGAATGGATGGAGCAAAGCGAATGCTGTCCATGATTCTGGAAGAGG
CTTTCGTACAGGTTCCTCATCAGTTACGATTTTCGGTATATGTAGTGGTG
GGATAGCTTTATGACTACATTCTCCAGCAGACAGATATTCAGTTAAGGTA
TCTGGATCAACGTTAGGAGTAATCACATTTATAAGATATGTGACACCTTC
AGTTGCACCAGCTTCGATATGGGGTTGCCATTTGGGGATAAAAACCTGGT
CACCAGGGTATGAAAAGATGGGTTTTACAATGTCATGTGTTTTTAACATG
AAACGTCCTTTCAATACAGTGTATTGGAAGCTGACTGGGTGTCGCTGGCA
TCGATGTCCCCGACTACCTCTCAAGGCGACCATCCTAATCACCATCTCAT
CTGTGATAGCGATGGTAAAAGTTGCCCGATCAAGTCCGGTCTTTTCTAGT
TTACGGTCCAGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014873-exon-sc0000200-1575043694:52266..53200 | TCONS_00014873-exon-sc0000200-1575043694:52266..53200 | Clytia hemisphaerica | exon |
| TCONS_00014873-exon-sc0000200-1575043694:51186..52205 | TCONS_00014873-exon-sc0000200-1575043694:51186..52205 | Clytia hemisphaerica | exon |
| TCONS_00014873-exon-sc0000200-1510915933:52266..53200 | TCONS_00014873-exon-sc0000200-1510915933:52266..53200 | Clytia hemisphaerica | exon |
| TCONS_00014873-exon-sc0000200-1510915933:51186..52205 | TCONS_00014873-exon-sc0000200-1510915933:51186..52205 | Clytia hemisphaerica | exon |
| TCONS_00014873-exon-sc0000200-1491911889:52266..53200 | TCONS_00014873-exon-sc0000200-1491911889:52266..53200 | Clytia hemisphaerica | exon |
| TCONS_00014873-exon-sc0000200-1491911889:51186..52205 | TCONS_00014873-exon-sc0000200-1491911889:51186..52205 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000200 | supercontig | sc0000200:51186..53200 - |
Blast
The following BLAST results are available for this feature:
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