TCONS_00014855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014855
Unique NameTCONS_00014855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014855 ID=TCONS_00014855|Name=TCONS_00014855|organism=Clytia hemisphaerica|type=transcript|length=4351bp
ACCTTGTAAGCCTTTATTGCCGAGTGCAAGaTCCACCAGCGGTGCGAATC
AAGAAATCTCGATCATTCGAACTCGATAGAAAAGCGGAAGTCATGATCAA
CAAGGATCAAACCTTCGAATCCAAATATGAACTCCTGGAGGAGCTTGGAA
AGGGTATGTTCGGCACCGTCAAAAAATGTCAGTGTACAGACACCGGCGTC
GAATATGCGGCCAAAGTGGTCCGAAAGACCacgaaaaacaaagaagaagt
tGTGCGTGAAGTATCCACTATGAACCTACTGCAACATAAATCCATTGCTC
AAATCCACGATGCGTTCGAAAGCAAAAGACAGATGGTTATTGTCATGGAA
TTGATTCGCGGAAAAGAATTGTTCGAAAAAGTTTGTCAGGAGGATACTTT
ACTGACTGAGAAACAATGTGTTTATTATTTACGGCAAATTTTATCGGGCG
TGGAATACATGCATAAAAAGAAGATTGTACATCTAGATCTGAAGCCGGAG
AACATTCTGTGCATCGATTCACCACAAGGTTATGATGAAATCAAACTGAT
CGATTTCGGTTTAGCGAGAGATTTGTCATCCACCAAACAGTTATCCTGTA
TTTGCGGGACTCCTGAATTCGTTGCTCCCGAAGTCATcaatttcgatcca
atcagcgTCCAATCAGACATGTGGTCATTAGGAGTCATAACGTACGTCTT
ATTAAGTGGGATCTCTCCTTTCCTTGGTGATGATGATGGTGAAACATTGC
AGAATGTCACTTTCGGTGAATTCGACTTTGAGGATGAAGATGGTGCTTTT
GAACACGTTTCTGAAATAGCTAAAGAATTCATTTCAGATCTACTCTGTCT
GAATCCAAGGGACCGTTTATCTGTGGGAGACTGTTTGGAACATTCCTGGT
TAAACACACAAACAAACGAGGAAGAATTAGACACCACCAATCTAAAGAAA
TTCATCGCAAGGCGACGGTGGCTGCGTACAATACACGCCATCAAGGCTGT
CGGTCGTTTCAATCAAGTCGCCAATTCGCTTGGCGGGAAAGGAAAGAAAG
GCGGTGACTCCCTAGCTAAAACCATGCTTGCCGCCCTCAATGCCGCCAAT
AAAGAAAATTCCATTGACAAGGAAGATGAAACTAAAGTTGAAGAAATAAT
CAGCCAATCAGCAGACGTGGATTCAAAATCTAACCAATCAGAGAGTGCTC
CCGAAACCGTAATCGAATCAAATGGCTTCCACAAGGACAAACCTGCCCAA
TCAGAGATTGTTACTAATGGCAACACAGAGTCCACTTTTGGAGACGATGA
TGAAATGTCTGATATGTTAAAGAAGCGAGCGGAAAGGAGGCGGAGAAAAC
gttttgaagatgaagaagaggaTTACGACGTCTTTGCAAACGTTTCCAAT
AGAGTAACGGAAGAAGTAACTCAAGCTACGGTAGAGTCTCCTAAAGTTAC
AGAAACCTCAGTCGAGGAATGTGAAAAAAGTACTACCATAGAACCCTCTG
AAGATACACAAGAATCCGTTAAAGACACGCCAGAATCTTTGCAAGCTACT
GAAGAGGACGTTGCGACGACGCCATCTGATACCGTGGAACCTATTAATGT
CACGCTCGAATCTGAGAACGTTTTTACGACCGAGGAGGACGTCACAGAAA
CCAAATACGACGTCAACAACAATGAGATTTCTGACGAACCAGCGGGTGTT
ATCGTTGAAAATGATGATAAAATGTTGAACAATGAACAAAAATCTGTTGA
AAATCTTGTTGAGAAAGACATTTCTGTTGAATCTGTTAAAAATGTTTCTG
TTGACGAAAAAGTAGAACATTCTGTTGTAGATGATTATGTTGAAAAAGTA
TTCACCAAATCTGAAATCAACGACAAGGTAGAAGTATCACCGTCTCCAGA
AATCATTGATAACAAGGAAGAAGCTTTAAAGATAGATTCCTTTAAGAACT
CTGATGACGTTAAGTTTGCATCAGAGAATGTTGAAGATGAAATAGTTGAA
AAACTTTctactgaaaataaaaaatctgagGAGAAGCCTGAGtttgaaaa
gtgggctgaaaaaGAGCCTAAGACGAAATCAGAGGTGATTAAAAAAGTCA
AGGAATCTCCCTCGGTCAAAACTGAGGAAAAGGAATCTACACTACCTAGC
AGAAGGGAACGCCGCAGGGAATCTTCAACCACAACATCAAGCGAGAAGAA
GGAATCCGTTATTTCTCCACGAAGAGAAAAGGCAAAATCTCCAGAACCCC
AGGAGGTCAAGGAATCGTCAAAATCTTCTATATCCAAAAAAACAGAAGAA
GCAAAAGTAGAGGACTCACCAAAACCTACGAACATCAGGGAATCATCGGA
GCCTCTCAAATCTGAAAAGAGAGAGTCCAGAAGATCTCGAGAAAAATCCC
CTGAAATCGAGAAACCCAAACCTAAGATGTCTTCGCCAGAGCCAGCAAAG
AGGGTTGAGAAGACACCACCAAAGACAAGCTCCAAACCACCAAAAGATTC
ACCTAAGAAGTCGAAAGAACCAGAAGCCGAAAAGAGCAAAAATGGGAAAG
TCACCAGTCCTAAGAGCAGTCGCAAAATCGGTAGTAAAATAAGTGGACTA
CTAAACAAAGTGAGTTCACCAAAATCGCAACGAAAGACTATCACTTCACC
CGCTGCCAAAGACAAGAAACATCTTTCACCAAAATCATCAAGGAAGCTAG
CATCGAAATTTGAAGCACAGCCGACAGACCCTGACACAAAACAAATCAAG
TCACCAccacctacttcaaagaagccCATAAAATCTCCACCACCTGCAGT
CAAAGATAAACCCAAAAAGAACGCACTAAAAACACCAGAAAAATTAACCT
CTACAAGCTCAGAAGTATCTGCTACGCCTGAAAGATCTTCGAAAGCTGCA
CCGCCGCCCACTTCACCCAAAAGATCAACACCGCCAGCAGTCCAAGATAA
ACCTAAATCCTCTAAACCAGAGGAAACACCTTCCGCCAAAAAGCAACCAC
CCTCGGCTTCAACCAAACCAAAGAAAACACCAGAGCCTACAGAACCGAAA
GATGTCACCGACAGCTCAAGACCGAAACCTCAATCGAGTATAACAAAACC
TGAAGAAGACACCTCCTCGCCAAAAATCCCAGATCGACAAGACCGATTAC
GTAATCGAGTTGGAAGCCTAGGAAACAACGCCAAAACAAATATGCCTGTA
TCTGGCAAAGATAAAAAAGGACTTTTTATGGCTTGGGAAACACGTATGTC
AACACCTGAACAATCGAGGCGAACCTATTCGACTGCGTCTCCTTTAACCA
ATCGAAATCTGATTGCTGCACGAAAAGCCTCGCTTAATAGACAAGCGAGT
CAAGAGCGATCTTTCGATAGCGACGGCTCGTCTATTGAAGACCGAACGTC
CTCACCTGTCGGTCGTTTTTCGAGAAATTCGTCAGTCCGTGTGTCATTGA
ACGAAAANAACAAATATGCCTGTATCTGGCAAAGATAAAAAAGGACTTTT
TATGGCTTGGGAAACCCGTATGTCAACACCTGAACAATCGAGGCGAACCT
ATTCGACTGCGTCTCCTTTAACCAATCGAAATCTGATCGCTGCACGAAAA
GTCTCGCTTAATAAACAAGCGAGTCAAGAGCGATCTTTCGATAGCGACGG
CTCGTCTATTGAAGACCGAACATCCTCGCCTGTCGGTCGTTTTTCGAGAA
ATTCGTCGGTCCGTGCCTCGTTGAACGAAAGTAACTTGTCGACGACTCGT
AAGAGACTAGTTACGAAGCCCCATAGTATAGCGAACAATGGaagtgtcaa
aaataaaatggcGATATTTGCCAAATTCCAAAAGCAATGATTTAATGaca
ccattgagtttaaatttTTGGTaacataaaattaaaatttgtacATACTT
TGGAGCATTTTATTTCATAGGTCGAGAATTTTAATCAAACTGTTTATCCT
CCAGTGCTTGGAGTCTCTGGGAAattagtttttaaaatttaggcGTTAAA
TCTTGACATATGAAATATAGTGTTCTCACTTCATCATATCTCGTATTAAA
TTTTGTATatacaattattttttttgcaattaagaaaaataactgcttct
gaaattttgctgctttaaGCTTCGAAATGACCTTGTTTTGTCAAGAAAGC
TTTTGAAGACTTTTATCATTGAATTCCCtaaattacagaaatattcTCTA
AATCATAGCCAGAAAAGCTGTGGAATCCTGTGAAGAAGCAAAATGAAGAT
TGATTAGATTatgattttaattattttataataacttttttgtaattttt
attacagtatatttcaataaaaagtaaCAACAATATTATAATCTTTACGA
G
Run BLAST on NCBI

transcript from alignment at sc0000200:101606..112515+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014855 ID=TCONS_00014855|Name=TCONS_00014855|organism=Clytia hemisphaerica|type=transcript|length=10910bp|location=Sequence derived from alignment at sc0000200:101606..112515+ (Clytia hemisphaerica)
ACCTTGTAAGCCTTTATTGCCGAGTGCAAGGTAAGTAAGAATGTAAAAGT
TGTTCACTCGAACCTCAAGTGGACCTCGCAGATATGGGAGTGCTTTATCA
GCCAGGATGTTGTAATTTTATATTGCATAGATTGTCAAAGGCTTTATTTA
TCAATTAAATAAAACGGCAGATGACTCGGATGTGAAAAAGTTAAAGATTC
TTTTGCTGTTTGACAAATGGCCTTAATTTCAACCTTGGTGACGGCTATGT
AAATTTGCACTAAATTAAACACAACTATCGACACGACTCGTTTTCGTTTC
AAAGGAAGTTTTCCGATCAAATCAGGTGCCAAAAGAGGTGATTGGTATTT
TAAAAGAGCCTGGAATATTTCAACTTTTATTAcaaattcttttctttcag
aTCCACCAGCGGTGCGAATCAAGAAATCTCGATCATTCGAACTCGATAGA
AAAGCGGAAGTCATGATCAACAAGGATCAAACCTTCGAATCCAAATATGA
ACTCCTGGAGGAGCTTGGAAAGTAAGCAGCCttgctatttttatttttcc
gctTTCAATTTCCTATCTAGCAAAAGAGTAGTTTTAGCttgcttttttgc
ttttttgcttCTATTTTCAAACTCAAGCAACAGAAGCAATAAACTGCCTG
TTTGAGATGTTTCTTTTTAAGACATTTGATGGATATTAGGGATTTATCAT
AGCAGCAATGATACTTTCACACGTGTTCGGTAATCCAAAGGGATCCGTTT
CACACCAGTTAGAGCTTACAAAGGATCGATATTTCGGGAATATTTCGCTT
AACGAAAGTATCCTACTTTTAgtggtttgtttacttttttaggGTTTTAA
TCTTTCGGCTTATGGATCGGTTTTCTCTACAGAAAGATTGACGTGACTGT
GTTATTAAGTAGAGGGTATCTTAATACCAAAAAGTCACTATTTTCCAAGT
TTGGATTCCTATGTCGGCCTTCATTTCAATAGATTAAGATAATCGGATGA
TCTGAAGTAAACATGAAGCCCAAAAGTTCACAGAGAaccaaattttaaac
aaaatggTGTCAAATCCGACAAAAGGCTggctacaattttttttcagata
atcTTTCCCGTGTCAtttctgttatttttttgtGTCCTGTTATTAATGGC
AACAAAATCCTTAACTGTAATTATGATTAGCTGTCATTGGAAatcaaact
taaaataaaattctGGAACGagaaggaaaatttgaaaaaatactgaAATG
TCTATTCTAAATAAGGATTTGCTTTTCCGGGAGACGTCATTTGGTCTATC
ATCGcagttatttttttcgaattcatTAAATTTCTGATGATGTtggtgtt
tgttttgattactgGTAGTAACAATAAATGGATAGTAACAGTTAATGAAA
ACAAATTAGCGTTTTTCCCTTTCTCAAAATTGAACGTCATTTGCGATTTA
AAGTGCTCTTCCTTATGCCTGAATTAAATGACCTCGTCTGAGGTGATATA
AATATATTGCAATTTTATATGTTGACACTTCCTTGGTTTTAACTGACGTT
AAGGGACCCCCTGGACATACAGCTTCGGTTTTGGGATCCTTTAATATAAC
CCTCGGTGAGTATAACCTCCtcaatgaaaaaaaactgtTATCAATTAAGA
ACCCCTAGTTTAATTAACCTCGGCTAGACCCTCCCTTGAATTTTTGAAga
tgcccagctggcacacaacgttgttttaacgttcatctaacgttatatgg
acgttgtgaacgttagattaacgttgaaacaacgttgtatgccagCTGGG
TGTTGACCCACTGCAATCGCCCATATGCATTTTACATATCCTTAACACTC
CGTGTACCGACTGTTTGCATCGTTGAGATGATGTATGACTtaacaaaatt
atttgaaaattatcATTAACTCTATCCCAGATGTCTTTCTGGCAAGGACT
TTAATGAAATTATTGTGAGCAGCTTTTTGTGGGGTGAGACATTTCACCTA
AAAAGCGTTGTGGTGTGTTTCCTGTCAGTTAAACATCATTTGCAATAATT
TGCACAATTTAATTAACTTGAAACACTATTAGCAGAATCATTAGTatata
ttaagcagatattcgacaagaaaaatcggatatcgaaaattattcagtcg
agcttgatgatattcgacGAAGCGAAGCTGAGTCGAATATTATTAAAACG
AGACTGAATAATTTCGATATCCGACTTTTCACGTTGAATATATGGTTTAT
CGTTCACCAATTAGCAGAAAAGCATTGTAATTTTCCCTACTTCATTCAGT
CTTTCTCTCTTTGTATgacattttcgaacgttttactatCTTATTAAGga
tgtcaatttcattgtttttcattctttaattacataacgttcgaatttcc
tttctttctcttttgttaaaaagaactttcttttatctatttaaataatt
atatcaaaaaactattttctttatgctcgctgctacaaaagagatatttt
actatcggatatctaaaaatattcgacagtGCGTTTTGCTTAGAGGTGGA
CGATAATAGTATATATTCAAAAGTCGTAAAAAATTTATTGGACGTTATAC
AATATAGTTGATCACTTTCTTCCACGGCAAAGAAAAAGAGGCCCATCTCA
CCCTCCTCCATCCTCTCCCCATTTTTCCCCCTGAAAGATTCACAGGACAA
AGTGAACCACCTAAAAAGAATGAcaatttcgaaagaaatttttgtgattt
tgattcTAAGAATGTTTATCCTAGATTTATTCGCCTGGCATCGGGCCTTT
TATTAGCATATTGCTGTTCGTGGTGCGCTGTGTGTCCGTTTTTGAGAAAT
CAGCGCTTTGTCAATTTCAAGTTAATTTTTAAAGAACAGCGCCTTGTAAC
TACAACGTATACGCAAACCTTCGACTATTGCTATGTCGCTTGGCCTTAAT
GCCGCTTCGGCTTCTTGttgtattttattaaaataaagaaaaagtgaGAG
TAccaaatacatgaaaataatgaaaaagttCCAATTGTAAGAATCTTTTC
AGGTTTTCATACACTATTTTATTTCTACGTTTTATCAGGGGTATGTTCGG
CACCGTCAAAAAATGTCAGTGTACAGACACCGGCGTCGAATATGCGGCCA
AAGTGGTCCGAAAGACCacgaaaaacaaagaagaagttGTGCGTGAAGTA
TCCACTATGAACCTACTGCAACATAAATCCATTGCTCAAATCCACGATGC
GTTCGAAAGCAAAAGACAGATGGTTATTGTCATGGAATTGATTCGCGGAA
AAGAATTGTTCGAAAAAGTTTGTCAGGAGGATACTTTACTGACTGAGAAA
CAATGTGTTTATTATTTACGGCAAATTTTATCGGGCGTGGAATACATGCA
TAAAAAGAAGATTGTACATCTAGATCTGAAGGTGAGTAGCTTCATTTTGG
TAAACTTAGCCTTAGGGGGCATGGTCCTTTGCCGAAATGATACCAGAAAA
TGAACACATTAACCTTGAACGAGATTTAAGCTCTATCTTAGTCTTACAAG
GATGACtagctattttttattttcagatattTTCAGACTGCCTAGCTTTG
AGAAGTCAATCCAAAATAGCAGTAGTTATACATGAAACGAGATGAAATCA
CTTATATTTACACTGAAAAATAGCTGATTATCTCTCTACTAAAAACATAC
TCTATAGAAACCATTCATTTCAATATCTATCCTCGTTTTCAGCCGGAGAA
CATTCTGTGCATCGATTCACCACAAGGTTATGATGAAATCAAACTGATCG
ATTTCGGTTTAGCGAGAGATTTGTCATCCACCAAACAGTTATCCTGTATT
TGCGGGACTCCTGAATTCGTTGGTAAGTCTATGTAGTTGCTTTAGTCCTG
CAGATAAGGatttaaatagaccttttcataaactacgttacgaacatcac
ttgcctcgttttgaaattattgccatggtgatcaactcccagcggatttt
attaaaactacttcctattcataaaataatttattaacaccatggtaatt
gtttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaaaggtct
atcaatATAGCCTTAACTGATGCTTTGACGttgctttgattttttaagca
aGCCGGGTGGGTCACCTTCCAAAACGGATTTTGAATGTATAAAACCAGGA
CCAGCAAATTTAGAATTTCTACCGTCGTTCTGGTTAAGATAACATTTTCC
GTATTGAGATAACTATGGATATTTCTGATGCTTTTATTTCACGGGTTAAC
CGGATGCAAAAGTTCCTCTTCAGGGGTTTTAAGATATCTTTTGTCCAACC
GATATAATGAATAACTTTCTGGGGCTTATTCTCGAATTAGCCAATACCCT
GGTCTTTTTCCGATGAAGAGTGGTCATTGACGTCTTGTCAGAATGTAGTG
GCATCCTTTCAGAAGAAAAGTATTTCACACTCATAAATCAACACTTTTCT
CTTTCCAGCTCCCGAAGTCATcaatttcgatccaatcagcgTCCAATCAG
ACATGTGGTCATTAGGAGTCATAACGTACGTCTTATTAAGTGGGATCTCT
CCTTTCCTTGGTGATGATGATGGTGAAACATTGCAGAATGTCACTTTCGG
TGAATTCGACTTTGAGGATGAAGATGGTGCTTTTGAACACGTTTCTGAAA
TAGCTAAAGAATTCATTTCAGATCTACTCTGTCTGAATCCAAGGTATGTA
CATTCCCTGCTGACATATaatgttgttttaacgttcatctaatgttcaca
acgtccatataatgttGGGTTGAATATCTTCGTCGAACCTTCATGACCAG
GTGAAGTTAGCACATTAGTATCCGTAGCTTCATCAAGTCAGGAGGTATAA
GCACCCCCTGGTCAAGCGTTAAATAATATGCATTTCATTTGCTTTATTAT
TTTCTATTGGGATCTGTTTCCTCGTTGTCATTCGTTGTTTTTTTAGATct
gcaaacaagaaaaaagatGAAATTACGATAGTCTGCATGAACCAGATGAA
GGAAatttttattataaattcaAATCGTTTCTTTTAGGGACCGTTTATNT
TTTTTAGATctgcaaacaagaaaaaagatGAAATTACGATAGTCTGCATG
AACCAGATGGAGGAAATTTTTACTATAAATTCAAATCGTTTCTTTTAGGG
ACCGTTTATCTGTGGGAGACTGTTTGGAACATTCCTGGTTAAACGTAAGT
TCCATAATAGTATCACTCCATATCCTCGCTTTAGTTTAACTGTCTTGAGC
TGATTAAAGTTTAAAAGAATAAATACTTTAGTTTCAGCCAGAACAGCTTC
CCTTTTACCCAATAAGATTTGTACTTTCGAGGGCGATGGAGTATGTCTGA
AGCGATTCGGAATAACTCGCAACTTTGTCcagcaaaatcgaggacgaaaA
CAGTGCTGATCAGGCCTATCCCGGAAGAGAACTTAATCAATCCGTAGATG
ATCTATTGTAGAAGTTTTTTTACAGTTGTAAATCAATGTTTTCCCAATAG
TAAAGGAAAGTCTTCCCCATAAGTGAACCAATGTTTTCCACATCTTCGTT
CAGACACAAACAAACGAGGAAGAATTAGACACCACCAATCTAAAGAAATT
CATCGCAAGGCGACGGTGGCTGGTACGTACTAACATATCCAATCCATTAC
GTAATAGCTTCTACTATACAACAAGGAAACGATAAAATCTTTTGTAGTCT
TAAGGGTATTTATCAACTATCTGTGTTAAAGACACCTTTCAGCCTATACT
TTTTACCGCAATGTTCGATCATaataatttcttaaaaaaccgTAAATTTG
GAGCCCCAAAGAAAACATTCACGCAATTGTACGTGGCCGTGTTTCTAATT
TTGCATATAGCCTCCAAATCTAAGTTACAATGCGTCGTCTACATcactaa
aggttcaatctcaaaataagtgtcttggaaaattagaaatcttgcaattc
tgttctgcctttgagattggcctttttgtcatatGAACCCATTGACTATT
CCTCTACAAGGAAAAagggcaatctcaatctcaaagatgatccaccacag
taaaacttttaattttacaaggtactaattttgagatttaaccTTTAGTC
ATGAGAACGGCGAATGCAGACACTAGAATAGTTTTcattaatgggctctt
ccagaaaaaacgTCCATTCGAGAGACAAGagtgattttttcgaaaaagat
ttttcatcaGCGAatatattgggctcttccagaaaaaatccgttcatggg
gggtggaggataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNccccccccccccgtctattcgggagacaagagtag
taTTATAATCATTATTTGATCTTTTCTTTTTAGCGTACAATACACGCCAT
CAAGGCTGTCGGTCGTTTCAATCAAGTCGCCAATTCGCTTGGCGGGAAAG
GAAAGAAAGGCGGTGACTCCCTAGCTAAAACCATGCTTGCCGCCCTCAAT
GCCGCCAATAAAGAAAATTCCATTGACAAGGAAGATGAAACTAAAGTTGA
AGAAATAATCAGCCAATCAGCAGACGTGGATTCAAAATCTAACCAATCAG
AGAGTGCTCCCGAAACCGTAATCGAATCAAATGGCTTCCACAAGGACAAA
CCTGCCCAATCAGAGATTGTTACTAATGGCAACACAGAGTCCACTTTTGG
AGACGATGATGAAATGTCTGATATGTTAAAGAAGCGAGCGGAAAGGAGGC
GGAGAAAACgttttgaagatgaagaagaggaTTACGACGTCTTTGCAAAC
GTTTCCAATAGAGTAACGGAAGAAGTAACTCAAGCTACGGTAGAGTCTCC
TAAAGTTACAGAAACCTCAGTCGAGGAATGTGAAAAAAGTACTACCATAG
AACCCTCTGAAGATACACAAGAATCCGTTAAAGACACGCCAGAATCTTTG
CAAGCTACTGAAGAGGACGTTGCGACGACGCCATCTGATACCGTGGAACC
TATTAATGTCACGCTCGAATCTGAGAACGTTTTTACGACCGAGGAGGACG
TCACAGAAACCAAATACGACGTCAACAACAATGAGATTTCTGACGAACCA
GCGGGTGTTATCGTTGAAAATGATGATAAAATGTTGAACAATGAACAAAA
ATCTGTTGAAAATCTTGTTGAGAAAGACATTTCTGTTGAATCTGTTAAAA
ATGTTTCTGTTGACGAAAAAGTAGAACATTCTGTTGTAGATGATTATGTT
GAAAAAGTATTCACCAAATCTGAAATCAACGACAAGGTAGAAGTATCACC
GTCTCCAGAAATCATTGATAACAAGGAAGAAGCTTTAAAGATAGATTCCT
TTAAGAACTCTGATGACGTTAAGTTTGCATCAGAGAATGTTGAAGATGAA
ATAGTTGAAAAACTTTctactgaaaataaaaaatctgagGAGAAGCCTGA
GtttgaaaagtgggctgaaaaaGAGCCTAAGACGAAATCAGAGGTGATTA
AAAAAGTCAAGGAATCTCCCTCGGTCAAAACTGAGGAAAAGGAATCTACA
CTACCTAGCAGAAGGGAACGCCGCAGGGAATCTTCAACCACAACATCAAG
CGAGAAGAAGGAATCCGTTATTTCTCCACGAAGAGAAAAGGCAAAATCTC
CAGAACCCCAGGAGGTCAAGGAATCGTCAAAATCTTCTATATCCAAAAAA
ACAGAAGAAGCAAAAGTAGAGGACTCACCAAAACCTACGAACATCAGGGA
ATCATCGGAGCCTCTCAAATCTGAAAAGAGAGAGTCCAGAAGATCTCGAG
AAAAATCCCCTGAAATCGAGAAACCCAAACCTAAGATGTCTTCGCCAGAG
CCAGCAAAGAGGGTTGAGAAGACACCACCAAAGACAAGCTCCAAACCACC
AAAAGATTCACCTAAGAAGTCGAAAGAACCAGAAGCCGAAAAGAGCAAAA
ATGGGAAAGTCACCAGTCCTAAGAGCAGTCGCAAAATCGGTAGTAAAATA
AGTGGACTACTAAACAAAGTGAGTTCACCAAAATCGCAACGAAAGACTAT
CACTTCACCCGCTGCCAAAGACAAGAAACATCTTTCACCAAAATCATCAA
GGAAGCTAGCATCGAAATTTGAAGCACAGCCGACAGACCCTGACACAAAA
CAAATCAAGTCACCAccacctacttcaaagaagccCATAAAATCTCCACC
ACCTGCAGTCAAAGATAAACCCAAAAAGAACGCACTAAAAACACCAGAAA
AATTAACCTCTACAAGCTCAGAAGTATCTGCTACGCCTGAAAGATCTTCG
AAAGCTGCACCGCCGCCCACTTCACCCAAAAGATCAACACCGCCAGCAGT
CCAAGATAAACCTAAATCCTCTAAACCAGAGGAAACACCTTCCGCCAAAA
AGCAACCACCCTCGGCTTCAACCAAACCAAAGAAAACACCAGAGCCTACA
GAACCGAAAGATGTCACCGACAGCTCAAGACCGAAACCTCAATCGAGTAT
AACAAAACCTGAAGAAGACACCTCCTCGCCAAAAATCCCAGATCGACAAG
ACCGATTACGTAATCGAGTTGGAAGCCTAGGAAACAACGCCAAAACAAAT
ATGCCTGTATCTGGCAAAGATAAAAAAGGACTTTTTATGGCTTGGGAAAC
ACGTATGTCAACACCTGAACAATCGAGGCGAACCTATTCGACTGCGTCTC
CTTTAACCAATCGAAATCTGATTGCTGCACGAAAAGCCTCGCTTAATAGA
CAAGCGAGTCAAGAGCGATCTTTCGATAGCGACGGCTCGTCTATTGAAGA
CCGAACGTCCTCACCTGTCGGTCGTTTTTCGAGAAATTCGTCAGTCCGTG
TGTCATTGAACGAAAANAACAAATATGCCTGTATCTGGCAAAGATAAAAA
AGGACTTTTTATGGCTTGGGAAACCCGTATGTCAACACCTGAACAATCGA
GGCGAACCTATTCGACTGCGTCTCCTTTAACCAATCGAAATCTGATCGCT
GCACGAAAAGTCTCGCTTAATAAACAAGCGAGTCAAGAGCGATCTTTCGA
TAGCGACGGCTCGTCTATTGAAGACCGAACATCCTCGCCTGTCGGTCGTT
TTTCGAGAAATTCGTCGGTCCGTGCCTCGTTGAACGAAAGTAACTTGTCG
ACGACTCGTAAGAGACTAGTTACGAAGCCCCATAGTATAGCGAACAATGG
aagtgtcaaaaataaaatggcGATATTTGCCAAATTCCAAAAGCAATGAT
TTAATGacaccattgagtttaaatttTTGGTaacataaaattaaaatttg
tacATACTTTGGAGCATTTTATTTCATAGGTCGAGAATTTTAATCAAACT
GTTTATCCTCCAGTGCTTGGAGTCTCTGGGAAattagtttttaaaattta
ggcGTTAAATCTTGACATATGAAATATAGTGTTCTCACTTCATCATATCT
CGTATTAAATTTTGTATatacaattattttttttgcaattaagaaaaata
actgcttctgaaattttgctgctttaaGCTTCGAAATGACCTTGTTTTGT
CAAGAAAGCTTTTGAAGACTTTTATCATTGAATTCCCtaaattacagaaa
tattcTCTAAATCATAGCCAGAAAAGCTGTGGAATCCTGTGAAGAAGCAA
AATGAAGATTGATTAGATTatgattttaattattttataataactttttt
gtaatttttattacagtatatttcaataaaaagtaaCAACAATATTATAA
TCTTTACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008318XLOC_008318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014855-exon-sc0000200-1491911889:101606..101635TCONS_00014855-exon-sc0000200-1491911889:101606..101635Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:101606..101635TCONS_00014855-exon-sc0000200-1510915933:101606..101635Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:101606..101635TCONS_00014855-exon-sc0000200-1575043694:101606..101635Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:102006..102126TCONS_00014855-exon-sc0000200-1491911889:102006..102126Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:102006..102126TCONS_00014855-exon-sc0000200-1510915933:102006..102126Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:102006..102126TCONS_00014855-exon-sc0000200-1575043694:102006..102126Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:104694..105036TCONS_00014855-exon-sc0000200-1491911889:104694..105036Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:104694..105036TCONS_00014855-exon-sc0000200-1510915933:104694..105036Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:104694..105036TCONS_00014855-exon-sc0000200-1575043694:104694..105036Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:105348..105477TCONS_00014855-exon-sc0000200-1491911889:105348..105477Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:105348..105477TCONS_00014855-exon-sc0000200-1510915933:105348..105477Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:105348..105477TCONS_00014855-exon-sc0000200-1575043694:105348..105477Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:106114..106348TCONS_00014855-exon-sc0000200-1491911889:106114..106348Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:106114..106348TCONS_00014855-exon-sc0000200-1510915933:106114..106348Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:106114..106348TCONS_00014855-exon-sc0000200-1575043694:106114..106348Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:106804..106849TCONS_00014855-exon-sc0000200-1491911889:106804..106849Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:106804..106849TCONS_00014855-exon-sc0000200-1510915933:106804..106849Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:106804..106849TCONS_00014855-exon-sc0000200-1575043694:106804..106849Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:107209..107277TCONS_00014855-exon-sc0000200-1491911889:107209..107277Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:107209..107277TCONS_00014855-exon-sc0000200-1510915933:107209..107277Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:107209..107277TCONS_00014855-exon-sc0000200-1575043694:107209..107277Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1491911889:109139..112515TCONS_00014855-exon-sc0000200-1491911889:109139..112515Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1510915933:109139..112515TCONS_00014855-exon-sc0000200-1510915933:109139..112515Clytia hemisphaericaexon
TCONS_00014855-exon-sc0000200-1575043694:109139..112515TCONS_00014855-exon-sc0000200-1575043694:109139..112515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:101606..112515 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131125	0.179744	0.0758304	0	0.262948	3.47608	7.9448	5.55448	4.61811	4.11903	3.99398	0.138015	13.4566	10.9387	17.5128	9.51214	5.23575	8.99786	6.50981	11.4532	6.39949	3.37349	2.31841	1.78632	1.04128	5.21429	27.1442	23.4473	3.1175e-05	1.53265
Blast
[Close]
BLAST of TCONS_00014855 vs. Swiss-Prot (Human)
Match: MYLK (Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4)

HSP 1 Score: 288.886 bits (738), Expect = 6.936e-79
Identity = 148/315 (46.98%), Postives = 210/315 (66.67%), Query Frame = 3 
Query:   90 VMINKDQTFESKYELLEELGKGMFGTVKKCQCTDTGVEYAAKVVRK-TTKNKEEVVREVSTMNLLQHKSIAQIHDAFESKRQMVIVMELIRGKELFEKVCQEDTLLTEKQCVYYLRQILSGVEYMHKKKIVHLDLKPENILCIDSPQGYDEIKLIDFGLARDLSSTKQLSCICGTPEFVAPEVINFDPISVQSDMWSLGVITYVLLSGISPFLGDDDGETLQNVTXXXXXXXXXXXXXXHVSEIAKEFISDLLCLNPRDRLSVGDCLEHSWLNTQTNEEE---LDTTNLKKFIARRRWLRTIHAIKAVGRFNQVA 1022
            V IN +Q     Y++ E LG G FG V +     T   +A K  +  + K KE + +E+S MN L H  + Q  DAFE K  +V+V+E++ G ELFE++  ED  LTE++C+ Y+RQI  GVEY+HK+ IVHLDLKPENI+C++  +    IKLIDFGLAR L +   L  + GTPEFVAPEVIN++PI   +DMWS+GVI Y+L+SG+SPF+GD+D ETL NVT     ++ +D AF+ +S+ AK+FIS+LL  + ++RL    CL+H WL   T   E   L    +KK++ARR+W +T +A++A+GR + +A
Sbjct: 1452 VTINTEQKVSDFYDIEERLGSGKFGQVFRLVEKKTRKVWAGKFFKAYSAKEKENIRQEISIMNCLHHPKLVQCVDAFEEKANIVMVLEIVSGGELFERIIDEDFELTERECIKYMRQISEGVEYIHKQGIVHLDLKPENIMCVN--KTGTRIKLIDFGLARRLENAGSLKVLFGTPEFVAPEVINYEPIGYATDMWSIGVICYILVSGLSPFMGDNDNETLANVT--SATWDFDDEAFDEISDDAKDFISNLLKKDMKNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKYMARRKWQKTGNAVRAIGRLSSMA 1762
The following BLAST results are available for this feature:
BLAST of TCONS_00014855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYLK6.936e-7946.98Myosin light chain kinase, smooth muscle OS=Homo s... [more]
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