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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014848 ID=TCONS_00014848|Name=TCONS_00014848|organism=Clytia hemisphaerica|type=transcript|length=1797bp
ATtcttatgacgtcatcacaaaagGGGGTCCAGCCCGTAACTCAttacaa
aatgacgtcacatcGAACGAGGATTGCTCCACCACAAGGTGTATCGAATG
TTCACGTGAATCATGGAAAACAAAGAGATACACATCTGTTGGAATGAACA
CAGAAATCAGTATCAATCCTCTCCTCGAGAATGATGCAACTCGTTCCATC
ACAGCCGGTGTCACTAAACAGAAATCTTCACAAAGTAAAGACCACGCCCC
TCCTGCACCCAAAAGAGGGCGCCCACCCTTGAACAGACAACCAGCATACG
CTAATGTGCATCCAAAAGAATTCATCGTTGCACCCATTCCAGGAATGGCA
CCACCATCCTCTGAAATGGAATACCGTCATTACAGACGCGCTCAATCTCC
GCGGCGTACCGCACCGGCGTTCGCGCACACTAAAATCTACCCTCCATCAG
TAGATTTGGATAATGTTCCATATGAACCAATCAGAGCAATTCACCACCCC
ATCCCTCCACCACACCATCAAGCAAGGCGTCTCTCTCCTCCACTCAGAAT
GGTAAAAATGGAAAGTGAACGTCATTCACCACCCATGCCGCCCAGCAGAT
ACGCCCGAGCTCGCTCGCCCATTCCTTACAAGGGTGGGTACGCTCGAGAA
GAGGAAAGACCTCGTGAAATTTATCGTGATTTCCACTCCTCACAAATGAA
AGGTGAAGATAGCAAACGAAGGAGATGGAGCCCAAAATATTATCCTTATG
AGCTTCCACCGCCACCAGGCGCCCTTGTTATTCCTCAACCACCCTACCCA
ACGCCTTCACGCCAACAAACATCCGCTCCTAAACAAAAGGAAGATCAAGA
GCCACAAGTGTACGTTCTTCCTGAAGACTTTGATATGGAAAAAGATCCTT
TCGATCCAGTCTCTATGACGTCACAAGACAGCAAAGATTCCACAGATTCC
AACATAAGTAAACAAAGCGAAAGTGTGCGATCACCTGATACTCAACCACC
TGCCACTCAATCACCTGCCACTCAATCACCTGCCACGATGTCTTCTCCTA
AAGCGAAAACAACAGAGACCACGCGACCTCCCCAACCACTCCTTGAAGGA
GCACCGCCAGGCGAACATAAACTCTCATGTAAAATCTGTAAACAAAGTTT
CCCTACCAAAAGCACATTATACAAACATTTGCGTGGTCATTCTTCCGATG
AAAAACCTTTCAAATGTAACGAGTGTGGCCAGGGATTCACTTTGAGCAGT
AACTTACGACAACATCGGATCATCCATAGAGGATACAAGCCTTTCCAATG
CGAATATTGTGGCAAGAAATTTATGCGCTCAAATGTTTATAAACAACATC
GACGAATTCACACGGGAGAACAAATGCATAAATGCGATCTGTGTCCGAGC
GAATTTCTTCAAAAATACGCTCTGGTCAAACATTTAAAGAAGGTTCATAA
TATTGAAACTTATGAGAACTAATTGTCCCCAGGGCCATTTAcattacttt
tttcattcatttaaaatatttttatttatctttcttcaaaaacaaacttA
TGTTTATATCACTATTTTACATTTCTTCTGACTTggtaaaattgatttta
cttgagttttaaaaatatttaggtaTTTTAGTCAccgaaaacgaaaacga
aaaagttttattattttatattttagcatatTTATACTTTTGTTTCTATG
AACCTTTCTGTAAAtaatatttaaaacatttttaatccTTTCAAGAATTG
AGCCTCAATTTTTCAAAGGTtcttatttttaatttgttttttcagat Run BLAST on NCBI transcript from alignment at sc0000200:70601..72750+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014848 ID=TCONS_00014848|Name=TCONS_00014848|organism=Clytia hemisphaerica|type=transcript|length=2150bp|location=Sequence derived from alignment at sc0000200:70601..72750+ (Clytia hemisphaerica)
ATtcttatgacgtcatcacaaaaggTAACACTTCCATTATACTTTAAAGC
TTAAATTAAACTTCAAGGCAATCAAGACGAAATCTAGGAATCGTATTTCT
TCCCTAAGGGCTAAGATATTTTAGGAAAATAAACCAGTATCGTTTcttgt
caattttttctttcgatttaatattcattattttcgttTGGTTGTTTata
aagtttgaaacaaaacaacaaaaactttGTCCAATAATCCCTCGATGACG
TTTCTGCTCAATAATCTAAGAGATAAACTTCTAATATAAAGTGTTGCAgt
gtgttttgttttatttacgTATGTGAATCCCCCATGTATCCTCTGTTTCT
GAACTATAATTCTATTTTCTTCAACAGGGGGTCCAGCCCGTAACTCAtta
caaaatgacgtcacatcGAACGAGGATTGCTCCACCACAAGGTGTATCGA
ATGTTCACGTGAATCATGGAAAACAAAGAGATACACATCTGTTGGAATGA
ACACAGAAATCAGTATCAATCCTCTCCTCGAGAATGATGCAACTCGTTCC
ATCACAGCCGGTGTCACTAAACAGAAATCTTCACAAAGTAAAGACCACGC
CCCTCCTGCACCCAAAAGAGGGCGCCCACCCTTGAACAGACAACCAGCAT
ACGCTAATGTGCATCCAAAAGAATTCATCGTTGCACCCATTCCAGGAATG
GCACCACCATCCTCTGAAATGGAATACCGTCATTACAGACGCGCTCAATC
TCCGCGGCGTACCGCACCGGCGTTCGCGCACACTAAAATCTACCCTCCAT
CAGTAGATTTGGATAATGTTCCATATGAACCAATCAGAGCAATTCACCAC
CCCATCCCTCCACCACACCATCAAGCAAGGCGTCTCTCTCCTCCACTCAG
AATGGTAAAAATGGAAAGTGAACGTCATTCACCACCCATGCCGCCCAGCA
GATACGCCCGAGCTCGCTCGCCCATTCCTTACAAGGGTGGGTACGCTCGA
GAAGAGGAAAGACCTCGTGAAATTTATCGTGATTTCCACTCCTCACAAAT
GAAAGGTGAAGATAGCAAACGAAGGAGATGGAGCCCAAAATATTATCCTT
ATGAGCTTCCACCGCCACCAGGCGCCCTTGTTATTCCTCAACCACCCTAC
CCAACGCCTTCACGCCAACAAACATCCGCTCCTAAACAAAAGGAAGATCA
AGAGCCACAAGTGTACGTTCTTCCTGAAGACTTTGATATGGAAAAAGATC
CTTTCGATCCAGTCTCTATGACGTCACAAGACAGCAAAGATTCCACAGAT
TCCAACATAAGTAAACAAAGCGAAAGTGTGCGATCACCTGATACTCAACC
ACCTGCCACTCAATCACCTGCCACTCAATCACCTGCCACGATGTCTTCTC
CTAAAGCGAAAACAACAGAGACCACGCGACCTCCCCAACCACTCCTTGAA
GGAGCACCGCCAGGCGAACATAAACTCTCATGTAAAATCTGTAAACAAAG
TTTCCCTACCAAAAGCACATTATACAAACATTTGCGTGGTCATTCTTCCG
ATGAAAAACCTTTCAAATGTAACGAGTGTGGCCAGGGATTCACTTTGAGC
AGTAACTTACGACAACATCGGATCATCCATAGAGGATACAAGCCTTTCCA
ATGCGAATATTGTGGCAAGAAATTTATGCGCTCAAATGTTTATAAACAAC
ATCGACGAATTCACACGGGAGAACAAATGCATAAATGCGATCTGTGTCCG
AGCGAATTTCTTCAAAAATACGCTCTGGTCAAACATTTAAAGAAGGTTCA
TAATATTGAAACTTATGAGAACTAATTGTCCCCAGGGCCATTTAcattac
ttttttcattcatttaaaatatttttatttatctttcttcaaaaacaaac
ttATGTTTATATCACTATTTTACATTTCTTCTGACTTggtaaaattgatt
ttacttgagttttaaaaatatttaggtaTTTTAGTCAccgaaaacgaaaa
cgaaaaagttttattattttatattttagcatatTTATACTTTTGTTTCT
ATGAACCTTTCTGTAAAtaatatttaaaacatttttaatccTTTCAAGAA
TTGAGCCTCAATTTTTCAAAGGTtcttatttttaatttgttttttcagat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014848-exon-sc0000200-1491911889:70601..70624 | TCONS_00014848-exon-sc0000200-1491911889:70601..70624 | Clytia hemisphaerica | exon |
| TCONS_00014848-exon-sc0000200-1510915933:70601..70624 | TCONS_00014848-exon-sc0000200-1510915933:70601..70624 | Clytia hemisphaerica | exon |
| TCONS_00014848-exon-sc0000200-1575043694:70601..70624 | TCONS_00014848-exon-sc0000200-1575043694:70601..70624 | Clytia hemisphaerica | exon |
| TCONS_00014848-exon-sc0000200-1491911889:70978..72750 | TCONS_00014848-exon-sc0000200-1491911889:70978..72750 | Clytia hemisphaerica | exon |
| TCONS_00014848-exon-sc0000200-1510915933:70978..72750 | TCONS_00014848-exon-sc0000200-1510915933:70978..72750 | Clytia hemisphaerica | exon |
| TCONS_00014848-exon-sc0000200-1575043694:70978..72750 | TCONS_00014848-exon-sc0000200-1575043694:70978..72750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000200 | supercontig | sc0000200:70601..72750 + |
Blast
BLAST of TCONS_00014848 vs. Swiss-Prot (Human)
Match: ZN764 (Zinc finger protein 764 OS=Homo sapiens GN=ZNF764 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 1.608e-26 Identity = 71/200 (35.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query: 891 KDPFDPVSMTSQDSKDSTDSNISKQSE---SVRSPDTQPPATQSPATQSP-ATMSSPKAKTTETTRPP---QPLLEGAPP---GEHKLSCKICKQSFPTKSTLYKHLRGHSSDEKPFKCNECGQGFTLSSNLRQHRIIHRGYKPFQCEYCGKKFMRSNVYKQHRRIHTGEQMHKCDLCPSEFLQKYALVKHLKKVHNIET 1460
+DP T D DS + +Q E ++ PD P A SP +SP A + P + ++ P +P L PP + + C +C +SF +STL +H+ H+ EKPF C +CG+GF +S+L +HR IHRG +P +C CG+ F + + H R+HTGE+ + C C F Q AL +H ++VH+ ET
Sbjct: 90 QDPEVAKCQTQTDPADSRNKKKERQREGTGALEKPD--PVAAGSPGLKSPQAPSAGPPYGWEQLSKAPHRGRPSLCAHPPVPRADQRHGCYVCGKSFAWRSTLVEHVYSHTG-EKPFHCTDCGKGFGHASSLSKHRAIHRGERPHRCLECGRAFTQRSALTSHLRVHTGEKPYGCADCGRRFSQSSALYQH-RRVHSGET 285 HSP 2 Score: 86.6557 bits (213), Expect = 3.924e-18 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 3
Query: 1110 GEHKLSCKICKQSFPTKSTLYKHLRGHSSDEKPFKCNECGQGFTLSSNLRQHRIIHRGYKPFQCEYCGKKFMRSNVYKQHRRIHTGEQMHKCDLCPSEFLQKYALVKH 1433
GE C C + F S LY+H R HS E PF C +CG+ F S+LR+H H G KP+ C CG+ F +S+ HRR H+GE+ + C C F QK A+ KH
Sbjct: 255 GEKPYGCADCGRRFSQSSALYQHRRVHSG-ETPFPCPDCGRAFAYPSDLRRHVRTHTGEKPYPCPDCGRCFRQSSEMAAHRRTHSGEKPYPCPQCGRRFGQKSAVAKH 361
The following BLAST results are available for this feature:
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