TCONS_00014802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014802
Unique NameTCONS_00014802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014802 ID=TCONS_00014802|Name=TCONS_00014802|organism=Clytia hemisphaerica|type=transcript|length=1338bp
CatgaatctaaaaattatattttcaagtaTTCGTAATTCCAAAATTTCGA
TAGTACATAGCTCATAGAAAATAGCTAgcaatttacaaatttacaagtat
tgtgcaaatttggctttttttcacatccggtggatttccggcttccaaaa
taataaaaattagtttTGTGTTTCGTTTACATAAATGTCACATTTCGAGT
AATCAAACCATACAAAGTTTACATACCAAAACGTTTTCTTTTTCCAACAG
GAACAAATCACCAGACATTTCGAAGATTGAGGTCAAGTCTGGATACGTAT
GTCGAAGAAGTCACAGTGGAATCATGGAAATCGCGATaagaattgttatt
tttgtattatcaatggtcGTTTGGTGGCTGAGCGCGACAGTTGATTTACA
atagaaatgctgaaaatcataaaattttatgtttccaaTGAGCAAATACA
GCATATTGTGAAAATCGGATGAAACGATATTTAAGCGCATATTTTGCAGT
ATCGATGTTAGCGATTGTATCGAATGTTGGTGattgtaatgaaaattttc
gaaaccaTACTGAAAATGACGACGATTTAGGATATTTTGAGATTCAATGA
GTTTAAGCTGCGTTAGGATAAGCGATTACATCAATTGTAATAATtccaaa
atagaaatatatatCCACTTATACCACTATTCAACGTTTCAATAATTATC
TTTATAATATCAACCAAAATGCATACATATATAGATAAATCAATTCACTT
GCAATGCACttccatattttttcattccataTTTTTCGATATTGTCTATT
TTTTAACTCTGTGacagtctttttgatttttgagtaggcaaatgaataac
aaaaagaatacaagaaaataataaaacaattaacaaaagcctattaaaaa
atggtagaaatattactttgttctgaatataataattttaaaaaatctaa
taagtatgaaaaatagaagaaaaatgataaatataaaaaataggaataaa
taatataaaaataggaataaataatataaaaataggaataaatagtacaa
taaataaaataatacattaAATGCCATACCATAGGTATGTAAGTTTCCTG
ACGGGAtagtaatcaaaaatgaattaatgaaacgcatctttaaactaatt
gtcctttgtctatagatttttttctaccatagaccatccataaaagacac
tcacACATATTTGACCCATTTCTCACACCCTCCCCAACTTCATCTGCAAA
TGTCAAATTCAACAGAGCCCTCCTTTTGGTTAATGCAGAAAAAAGCTTTC
CTCCCCAAAGAATAAAATGTCTTTTAAGAATAGTCTTT
Run BLAST on NCBI

transcript from alignment at sc0000198:99679..101083-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014802 ID=TCONS_00014802|Name=TCONS_00014802|organism=Clytia hemisphaerica|type=transcript|length=1405bp|location=Sequence derived from alignment at sc0000198:99679..101083- (Clytia hemisphaerica)
CATGAATCTAAAAATTATATTTTCAAGTATTCGTAATTCCAAAATTTCGA
TAGTACATAGCTCATAGAAAATAGCTAGCAATTTACAAATTTACAAGTAT
TGTGCAAATTTGGCTTTTTTTCACATCCGGTGGATTTCCGGCTTCCAAAA
TAATAAAAATTAGTTTTGTGTTTCGTTTACATAAATGTCACATTTCGAGT
AATCAAACCATACAAAGTTTACATACCAAAACGTTTTCTTTTTCCAACAG
GAACAAATCACCAGACATTTCGAAGATTGAGGTCAAGTCTGGATACGTAT
GTCGAAGAAGTCACAGTGGAATCATGGAAATCGCGATAAGAATTGTTATT
TTTGTATTATCAATGGTCGTTTGGTGGCTGAGCGCGACAGTTGATTTACA
ATAGAAATGCTGAAAATCATAAAATTTTATGTTTCCAATGAGCAAATACA
GCATATTGTGAAAATCGGATGAAACGATAATATGATACAATGACCAAATA
CAGCATATTGTGAAAATCGGATGAAACGATAATATGATACAATGACTTTA
AGCGCATATTTTGCAGTATCGATGTTAGCGATTGTATCGAATGTTGGTGA
TTGTAATGAAAATTTTCGAAACCATACTGAAAATGACGACGATTTAGGAT
ATTTTGAGATTCAATGAGTTTAAGCTGCGTTAGGATAAGCGATTACATCA
ATTGTAATAATTCCAAAATAGAAATATATATCCACTTATACCACTATTCA
ACGTTTCAATAATTATCTTTATAATATCAACCAAAATGCATACATATATA
GATAAATCAATTCACTTGCAATGCACTTCCATATTTTTTCATTCCATATT
TTTCGATATTGTCTATTTTTTAACTCTGTGACAGTCTTTTTGATTTTTGA
GTAGGCAAATGAATAACAAAAAGAATACAAGAAAATAATAAAACAATTAA
CAAAAGCCTATTAAAAAATGGTAGAAATATTACTTTGTTCTGAATATAAT
AATTTTAAAAAATCTAATAAGTATGAAAAATAGAAGAAAAATGATAAATA
TAAAAAATAGGAATAAATAATATAAAAATAGGAATAAATAATATAAAAAT
AGGAATAAATAGTACAATAAATAAAATAATACATTAAATGCCATACCATA
GGTATGTAAGTTTCCTGACGGGATAGTAATCAAAAATGAATTAATGAAAC
GCATCTTTAAACTAATTGTCCTTTGTCTATAGATTTTTTTCTACCATAGA
CCATCCATAAAAGACACTCACACATATTTGACCCATTTCTCACACCCTCC
CCAACTTCATCTGCAAATGTCAAATTCAACAGAGCCCTCCTTTTGGTTAA
TGCAGAAAAAAGCTTTCCTCCCCAAAGAATAAAATGTCTTTTAAGAATAG
TCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008280XLOC_008280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014802-exon-sc0000198-1575043694:100605..101083TCONS_00014802-exon-sc0000198-1575043694:100605..101083Clytia hemisphaericaexon
TCONS_00014802-exon-sc0000198-1575043694:99679..100537TCONS_00014802-exon-sc0000198-1575043694:99679..100537Clytia hemisphaericaexon
TCONS_00014802-exon-sc0000198-1510915933:100605..101083TCONS_00014802-exon-sc0000198-1510915933:100605..101083Clytia hemisphaericaexon
TCONS_00014802-exon-sc0000198-1510915933:99679..100537TCONS_00014802-exon-sc0000198-1510915933:99679..100537Clytia hemisphaericaexon
TCONS_00014802-exon-sc0000198-1491911889:100605..101083TCONS_00014802-exon-sc0000198-1491911889:100605..101083Clytia hemisphaericaexon
TCONS_00014802-exon-sc0000198-1491911889:99679..100537TCONS_00014802-exon-sc0000198-1491911889:99679..100537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:99679..101083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27721	0.671021	0.509468	0.302434	9.53542	5.77215	5.31785	6.69766	3.38	2.50662	2.51419	3.85806	3.27077	2.30622	3.40183	4.20946	1.5407	2.6636	5.14805	4.56133	6.55251	5.8304	5.43963	7.51379	2.82467	3.84742	11.1192	9.59343	7.6345	8.99553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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