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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014772 ID=TCONS_00014772|Name=TCONS_00014772|organism=Clytia hemisphaerica|type=transcript|length=3052bpRun BLAST on NCBI transcript from alignment at sc0000198:223729..241259+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014772 ID=TCONS_00014772|Name=TCONS_00014772|organism=Clytia hemisphaerica|type=transcript|length=17531bp|location=Sequence derived from alignment at sc0000198:223729..241259+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014772 vs. Swiss-Prot (Human)
Match: XPR1 (Xenotropic and polytropic retrovirus receptor 1 OS=Homo sapiens GN=XPR1 PE=1 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 6.363e-98 Identity = 197/395 (49.87%), Postives = 260/395 (65.82%), Query Frame = 3
Query: 1305 PAVRMYRXXXXXXXXXXXXXVNVHGWGNAGVNHVLIFELDPRHHLNYVELLMLSSFLGVVWCISCIAFLFSNDFNIPVFSNPLACGVFYLIFFLNPTKTFHYXXXXXXXXXXXXXXXXPFCAVRFADFWLADQLNSLVVALRDFQXXXXXXXXD--W---------YNEGNEMCRDPRNIVRPFVAFLPAWFRFAQCLRRYYDTRKGFPHLVNAGKYXXXXXXXXXXXXXXVYPE---SDGL--FTVWVISLIVGTCYTLFWDLKMDWGLFSPEAGENTFLREQIVYEYRIYYYLAILADLIFRLMWTLTLSIGNYGWVHH--EFFTFFIAICEVVRRFIWNYFRLENEHLNNVGEFRAVRDISIKPMVSKDEIKDTLTLEQIMDLEEGPIPRNK 2435
P +R+YRG FL+I + LLG+N +GW AGVNHVLIFEL+PR +L++ L ++ FLG++WC+S +A F+ IP + PLA F + F +NPTKTF+Y++R WLL++L R+ APF V FADFWLADQLNSL V L D +Y CFY + W +E + +C VR V +PAW RF QCLRRY DT++ FPHLVNAGKYST+ + + +YS + E SD + F +W++ I+ +CYTL WDLKMDWGLF AGENTFLRE+IVY + YYY AI+ D+I R WT+ +SI + + H + A EV RRF+WN+FRLENEHLNN GEFRAVRDIS+ P+ + D+ LEQ+MD ++G R K
Sbjct: 267 PLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHVLIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLINPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLELKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNAGKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLEVFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQT----LLEQMMDQDDGVRNRQK 657 HSP 2 Score: 187.578 bits (475), Expect = 2.309e-49 Identity = 105/237 (44.30%), Postives = 151/237 (63.71%), Query Frame = 3
Query: 189 MKFGEHLGSQLTPEWKCQYVNYDELKKFLYXXXXXXXXXXXXXXXXLRRHFMKHDEEFFVFCDNELRKINTFYAEKLAEALRRFGEIELEVANA--------GVERLQKVARSTSLFPDEQENYKQNVXXXXXXXXXXXXXXXXXXAVVGEYYLSLVLIQNYQQLNFTGFRKILKKHDKMWKTTSGVEYRQKKVENSGFYVNKQIDDLINDTETIAIEDLENGDRSKAMDRLRVPPL 875
MKF EHL + +TPEW+ QY+ Y+ K LY ++ APS E ++E+ ++R+F K +E+FF C+ EL KINTFY+EKLAEA RRF ++ E+ ++ GV L++ + E+ +N+K ++ E+YLSL+L+QNYQ LNFTGFRKILKKHDK+ +T+ G ++R VE + FY K+I+ LI++TE + +LE+GDR KAM RLRVPPL
Sbjct: 1 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKL--------------AFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVEVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPL 223 The following BLAST results are available for this feature:
BLAST of TCONS_00014772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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