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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014768 ID=TCONS_00014768|Name=TCONS_00014768|organism=Clytia hemisphaerica|type=transcript|length=3154bpRun BLAST on NCBI protein sequence of TCONS_00014768-protein >TCONS_00014768-protein ID=TCONS_00014768-protein|Name=TCONS_00014768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp PYSLPCKAIILYFMYFRSFFIAVTIYFIYRKNLYLSNHKVMATWGIDLWDRun BLAST on NCBI transcript from alignment at sc0000198:185990..203557+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014768 ID=TCONS_00014768|Name=TCONS_00014768|organism=Clytia hemisphaerica|type=transcript|length=17568bp|location=Sequence derived from alignment at sc0000198:185990..203557+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000198:185990..203557+ >TCONS_00014768 ID=TCONS_00014768|Name=TCONS_00014768|organism=Clytia hemisphaerica|type=CDS|length=20628bp|location=Sequence derived from alignment at sc0000198:185990..203557+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014768 vs. Swiss-Prot (Human)
Match: FBP1L (Formin-binding protein 1-like OS=Homo sapiens GN=FNBP1L PE=1 SV=3) HSP 1 Score: 199.519 bits (506), Expect = 1.183e-53 Identity = 116/287 (40.42%), Postives = 168/287 (58.54%), Query Frame = 3
Query: 129 TWGIDLWDQRDIVEKHTSNGIDFLERCASFVKERIRIEQEYAKSLRRLVKQYQFKQKKTEEILPYTYQQAFKQFLQETDDFAGQREVIAEETKNNVLNDMHNVASQSKNERKKALQNLNDLKSHLDQLQKALNVAKAKYEKASDDSNSAYKNYETATQSLDMTKAQILKFQKTSQDKKAHM-DKCKDDYQNALENFNKTQQLYYQADFPNTVMKELQTPEENRVQKLANYFKEMSNIMRKVQPIITACLDGMVKAGDTCDPGKDSLTVIDRNKTGEYPPHDLLFEEW 986
+WG +LWDQ D ++KHT GIDFLER A FVKERI IEQ YAK LR LVK+Y K+ +E +T AF L E +D+AGQREV+AEE + V ++ A K ERK LQ + +LD K ++ +K K+E+ ++ A ++YE + TKA + K K + + HM D+ K++Y L+NFN Q ++ P + K+LQ +E R KL+ ++ ++ RKV PII+ CL+GM+ A + D +DS V+D K+G PP D FE++
Sbjct: 2 SWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCVAFFNILNELNDYAGQREVVAEEMAHRVYGELMRYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKADVEK-AKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQ-IYKQLQEMDERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFEPPGDFPFEDY 286 The following BLAST results are available for this feature:
BLAST of TCONS_00014768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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