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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014743 ID=TCONS_00014743|Name=TCONS_00014743|organism=Clytia hemisphaerica|type=transcript|length=2890bpRun BLAST on NCBI protein sequence of TCONS_00014743-protein >TCONS_00014743-protein ID=TCONS_00014743-protein|Name=TCONS_00014743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=913bp YDLSLVMLRRSCIHILLSMLCLPLHFLQLPIQGLCKEKVTGCDNTHSSSQRun BLAST on NCBI transcript from alignment at sc0000197:434986..450890- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014743 ID=TCONS_00014743|Name=TCONS_00014743|organism=Clytia hemisphaerica|type=transcript|length=15905bp|location=Sequence derived from alignment at sc0000197:434986..450890- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000197:434986..450890- >TCONS_00014743 ID=TCONS_00014743|Name=TCONS_00014743|organism=Clytia hemisphaerica|type=CDS|length=60324bp|location=Sequence derived from alignment at sc0000197:434986..450890- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014743 vs. Swiss-Prot (Human)
Match: RLGPB (Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1) HSP 1 Score: 292.738 bits (748), Expect = 2.931e-82 Identity = 230/692 (33.24%), Postives = 348/692 (50.29%), Query Frame = 2
Query: 23 LRRSCIHILLSMLCLPLHFLQLPIQGLCKEKVTGCDNTHSSSQVTFISLKGRLTDLLKKALEAETDSENTQLLFAGAMLLMEDTMMVESRNDEYLKSHPASSTPCILLENVDEIGKGSPKLLHIAKTGPIKHASSSENIKQKGGDKSPKSDIGRLGKKTDTHTTKGMFVYMTNFLRQGLMFTEKWRGDLNITLAALECMSGMANYDTRFIDEDAAKRTLTWICNYIEFQAKKPPPSHSKDLHSIIVAAFQCVYIWLINHPWLVEDKYCLDAVLEVIELGLXXXXXXXXXXXXXXPSMKADKELKLISFRVRDAAECLLSLLMEQLDLFPNPCGPSTVSTLIDEEGILHHCGSPEGRK--FKYFASDATLIIGLLEDSVTQPKGTS-----PSVIAILRGPSGKKACAINLQQFPRN---NRSEFVENCKRLAPLPSPAENIPDAASVSQINFPLEVDRVEKTRTDSSIPDLGSVLN---ERQKEELLNXXXXXXXXXXXXXXXXXXXXNARXXXXXXXXXXXXLSTRN-EATRLFLSHLGLLTPENLQFEQEHQ-TQGLVALKSLDDDLETSLNSLDAFPTRTFDTLLIFFVKKGQDRAKDITNN--EIPTLDNHLFTEFLHSLGWPVETSEHNGWNGDLTTSWKTK--DKLTEEQQQY------------SMKKMFYYSDLTTELAIHVPA 2005
LRRS I+ILLS+L LP HF + + + + K + D++ +TF+SLK RL ++L AL+ ETD NTQ++ + +++D+ ++E+ + E+G G L ++T ++S + + D + +T + G+ + + + Q L +WR D++I+LAALE +SG+A +D KR ++ +C YI +Q +P P HS+DLHS+IVAAFQC+ +WL HP ++++K CL VLE++ELG+SGSKSK+ ++ K DKE S RV+DAAE L+ +M+ L FP+P GP++ +L++E ++ + P K F+YF D ++I+ +LE QP G PSV ++RG SG+ A A L PR N+ FV P P P ++ SV FP EVD++ + D SIPDL ++ E + E+L + E S EE R P + + RLFLSH G L+ E L+ + L+AL S + LD P R FDT+ IF++K GQ ++I N T+ H F EFL SLGW V+ H GW G ++TSW D QQ+ KK+ YY+D TE+A VP+
Sbjct: 610 LRRSSINILLSLLPLPHHFGTVKSEVVLEGKFSNDDSSSYDKPITFLSLKLRLVNILIGALQTETDPNNTQMILGAMLNIVQDSALLEAIGCQM------------------EMGGGENNLKSHSRTNSGISSASGGSTEPTTPDSERPAQALLRDYALNTDSAAGLLIRSIHLVTQRL--NSQWRQDMSISLAALELLSGLAKVKV-MVDSGDRKRAISSVCTYIVYQCSRPAPLHSRDLHSMIVAAFQCLCVWLTEHPDMLDEKDCLKEVLEIVELGISGSKSKNNEQEV---KYKGDKEPNPASMRVKDAAEATLTCIMQLLGAFPSPSGPASPCSLVNETTLIKYSRLPTINKHSFRYFVLDNSVILAMLE----QPLGNEQNDFFPSVTVLVRGMSGRLAWAQQLCLLPRGAKANQKLFVPE-----PRPVPKNDVGFKYSVKHRPFPEEVDKIPFVKADLSIPDLHEIVTEELEERHEKLRSGMAQQIAYEIHLEQQSEEELQKRSFPDPVTDCKPPPPAQEFQTARLFLSHFGFLSLEALKEPANSRLPPHLIALDSTIPGFFDDIGYLDLLPCRPFDTVFIFYMKPGQKTNQEILKNVESSRTVQPH-FLEFLLSLGWSVDVGRHPGWTGHVSTSWSINCCDDGEGSQQEVISSEDIGASIFNGQKKVLYYADALTEIAFVVPS 1267 HSP 2 Score: 139.043 bits (349), Expect = 3.264e-33 Identity = 69/147 (46.94%), Postives = 99/147 (67.35%), Query Frame = 2
Query: 2306 ETKIVVAWLQNFNDHQHFPARDLV-ELNAPQEASYSTGYIPTGRVPEREIVIIYIHPLKTGLFRIMVATVFGS-SIGGPLVDGMVCSRRVLGSMVRSTAINICRRRRLEIDSYSPPHVCRKIRIQEMIRKHTIKQTVPEFYASLLQE 2740
ET++ V W++ ++D ++FP +L+ E++ E + ++ E+E+ +I+IHPL TGLFRI + G ++ PLVDGM+ SRR LG +VR T INICRR+RLE DSYSPPHV RK +I +++ K+ KQ PEFY SL QE
Sbjct: 1340 ETRVSVVWVERYDDIENFPLSELMTEISTGVETTANSSTSLRSTTLEKEVPVIFIHPLNTGLFRIKIQGATGKFNMVIPLVDGMIVSRRALGFLVRQTVINICRRKRLESDSYSPPHVRRKQKITDIVNKYRNKQLEPEFYTSLFQE 1486 The following BLAST results are available for this feature:
BLAST of TCONS_00014743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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