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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014633 ID=TCONS_00014633|Name=TCONS_00014633|organism=Clytia hemisphaerica|type=transcript|length=5586bpRun BLAST on NCBI protein sequence of TCONS_00014633-protein >TCONS_00014633-protein ID=TCONS_00014633-protein|Name=TCONS_00014633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1616bp MATALKEVTNMESKKSTNKKRLSVERIYQKKTQLEHIILRPDSYIGSAEPRun BLAST on NCBI transcript from alignment at sc0000191:273620..299742- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014633 ID=TCONS_00014633|Name=TCONS_00014633|organism=Clytia hemisphaerica|type=transcript|length=26123bp|location=Sequence derived from alignment at sc0000191:273620..299742- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000191:273620..299742- >TCONS_00014633 ID=TCONS_00014633|Name=TCONS_00014633|organism=Clytia hemisphaerica|type=CDS|length=116424bp|location=Sequence derived from alignment at sc0000191:273620..299742- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014633 vs. Swiss-Prot (Human)
Match: TOP2B (DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3) HSP 1 Score: 1525.38 bits (3948), Expect = 0.000e+0 Identity = 746/1180 (63.22%), Postives = 925/1180 (78.39%), Query Frame = 1
Query: 235 ALKEVTNMESKKSTNKKRLSVERIYQKKTQLEHIILRPDSYIGSAEPTTQNMWIWDDQKQAIVNKSITFTPGLYKIFDEIIVNAADNKQRDPRMNTIKVKIDQETNVISVWNNGKGIPVEMHKEENLFVPTLIFGHLLTSSNYDDTEKKVVGGRNGFGAKLCNIFSTKFTVETGCNGKK--FKQVWRNNMGKAETEKIVDYTGTDFTCITFSPDLKKFGMEKLDDDFVALLKRRAYDMAGVAKGVSVQLNGDKLKVKTFKDYVNLYLKGTKKSEDDELPKVIHEIVNPRWEVCVTLSETGFQQASFVNSIATTKGGSHINYLVDQICEKLISAVKKKTGKGGFNIKPFQVKSHMWVFANCLIENPTFDSQTKENMTLRKNAFGSACELSDKYIKQVQDCGILENIMNWVKYKSEAQLNKKTSGSSKHTRLKGVPKLDDANMAGTKNGRDCTLIVTEGDSAKALAMAGLSIVGRDRYGVFPLRGKLLNVRDASHKQIMDNAEIGSMCKIIGLQFGKKYTTESDMKNLRYGHLMIMADQDIDGSHIKGLVINFIHAHWPDLLKLPFLEEFITPIVKVSKGNQVFSFFSIPEFEEWQGETPNHKSWRIKYYKGLGTSTSKEGKEYFSNMQRHRIVFDYDGPSCDQALIMAFSKKLANDRKDWLNTGMNERKMRREADLPEIYLYEKNTKSVTYRDFVNKELILFSNADNERSIPSMVDGLKPGQRKVLFTCMKRNDKHEVKVAQLAGSISELSAYHHGEMSLMGTIINLAQNYVGSNNLNILVPHGQFGTRHMGGKDSASPRYICTMMSSLTRLLYPVHDDYVLNFLSEDNQKIEPEWYCPIIPMCLINGAEGIGTGYSTKVPNHDVREVVENVRRMIAGEEPQAMKPSYKNFTGTIEHVEGQKYHCTGIVNVIDENTIEITELPIRTWTQPYKETVMDVFLYGTDKVPACITDYKEYHTDTTVKFLVSMTTEQLNKAEDEGFYKKFKLESNMLLSNIVLFDQYGCLKKYNNTLEILQEFYGIRLKKYQERKDFLVGMLQAEASRLENQARFXXXXXXXXXXXXNRTKRDVITKLVERGFDSDPVKIWKNKVSKDTAAVDDESEAPVTDYASSTSTTSGGPDFQYLLSMAIMXXXXXXXXXXXXQRDQKKEELDTLLAKTPEELWSTDLDVFCEELDRVEEQE 3768
A K+ + + K+ + K+LSVER+YQKKTQLEHI+LRPD+YIGS EP TQ MW++D+ + + +TF PGLYKIFDEI+VNAADNKQRD M IKV ID E+N+IS+WNNGKGIPV HK E ++VP LIFG LLTSSNYDD EKKV GGRNG+GAKLCNIFSTKFTVET C K FKQ W NNM K KI + G D+TCITF PDL KF MEKLD D VAL+ RRAYD+AG +GV V NG KL V F+ YV+LY+K K E KVIHE+ N RW+VC+TLSE GFQQ SFVNSIATTKGG H++Y+VDQ+ KLI VKKK K G ++KPFQVK+H+WVF NCLIENPTFDSQTKENMTL+ +FGS C+LS+K+ K +CGI+E+I+NWVK+K++ QLNKK S S K++++KG+PKLDDAN AG K+ +CTLI+TEGDSAK+LA++GL ++GRDRYGVFPLRGK+LNVR+ASHKQIM+NAEI ++ KI+GLQ+ K Y +K LRYG +MIM DQD DGSHIKGL+INFIH +WP LLK FLEEFITPIVK SK Q SF+SIPEF+EW+ N K+W+IKYYKGLGTST+KE KEYF++M+RHRI+F Y GP D A+ +AFSKK +DRK+WL M +R+ RR LPE +LY TK +TY DF+NKELILFSN+DNERSIPS+VDG KPGQRKVLFTC KRNDK EVKVAQLAGS++E+SAYHHGE +LM TI+NLAQN+VGSNN+N+L P GQFGTR GGKD+ASPRYI TM+S+L RLL+P DD +L FL +DNQ++EPEWY PIIPM LINGAEGIGTG++ K+PN+D RE+V NVRRM+ G +P M P+YKNF GTI+ + +Y +G + V+D NT+EITELP+RTWTQ YKE V++ L GTDK PA I+DYKEYHTDTTVKF+V MT E+L +AE G +K FKL++ + +++VLFD GCLKKY +IL+EF+ +RL Y RK++LVGML AE+++L NQARFI+EKI+GKI IENR+K+D+I LV+RG++SDPVK WK +++ AA +DE++ D +SS S T GPDF Y+L+M++ SL+KEK +EL+KQRD K E++ L K+P +LW DL F EELD+VE QE
Sbjct: 31 AAKKEESETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDED-VGMNCREVTFVPGLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVK-DKLDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKKKN-KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAASNCGIVESILNWVKFKAQTQLNKKCS-SVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKE--AQEKAAEEDETQNQHDD-SSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQE 1203 The following BLAST results are available for this feature:
BLAST of TCONS_00014633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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