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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014614 ID=TCONS_00014614|Name=TCONS_00014614|organism=Clytia hemisphaerica|type=transcript|length=2639bpRun BLAST on NCBI protein sequence of TCONS_00014614-protein >TCONS_00014614-protein ID=TCONS_00014614-protein|Name=TCONS_00014614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp MSTETGSKMRLTLVTLGTTLASLAVIGNAFYQKKQFYPSIVFLTKSSPSIRun BLAST on NCBI transcript from alignment at sc0000191:159813..179019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014614 ID=TCONS_00014614|Name=TCONS_00014614|organism=Clytia hemisphaerica|type=transcript|length=19207bp|location=Sequence derived from alignment at sc0000191:159813..179019+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000191:159813..179019+ >TCONS_00014614 ID=TCONS_00014614|Name=TCONS_00014614|organism=Clytia hemisphaerica|type=CDS|length=23400bp|location=Sequence derived from alignment at sc0000191:159813..179019+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014614 vs. Swiss-Prot (Human)
Match: SYVN1 (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2) HSP 1 Score: 473.396 bits (1217), Expect = 2.354e-155 Identity = 216/339 (63.72%), Postives = 273/339 (80.53%), Query Frame = 1
Query: 211 TLVTLGTTLA-SLAVIGNAFYQKKQFYPSIVFLTKSSPSIAVLYAQAFVLVFLFGKAMRKIFFGQLRAAEVEHLIEKFWYVITETCLAFTVFRDDFSARFVALFTFLLFMKAFHWLLEDRVDYMERSPFIRFIFHVRVISLLIVLGTIDSILIHHAFKTTVASGASVQMVFGFEYAILLTMVVATFMKYTLHVVDYSLDHPWENRNVYLLYGELITGFVKCCLYLAFVVVMVKIHTFPLFAIRPMYLTIRGFKKSLSDVILSRRAIAYMNTRFQDVNEEELQRLDITTCIICRDRLVVG-KKLPCNHIFHTHCLRSWFQRQQSCPTCRLDVLTNRRPAE 1221
T V + +LA + AV+ +A+Y K QFYP++V+LTKSSPS+AVLY QAFVLVFL GK M K+FFGQLRAAE+EHL+E+ WY +TETCLAFTVFRDDFS RFVALFT LLF+K FHWL EDRVD+MERSP I ++FH R++SL+ +LG +D + + HA+ + + GASVQ+VFGFEYAIL+TMV+ F+KY LH VD ++PW+N+ VY+LY EL TGF+K LY+AF+ +M+K+HTFPLFAIRPMYL +R FKK+++D I+SRRAI MNT + D EELQ +D CIICR+ +V G K+LPCNHIFHT CLRSWFQRQQ+CPTCR+DVL PA+
Sbjct: 4 TAVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERSPNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMD-NVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQ 341 The following BLAST results are available for this feature:
BLAST of TCONS_00014614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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