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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014610 ID=TCONS_00014610|Name=TCONS_00014610|organism=Clytia hemisphaerica|type=transcript|length=979bp
CTTAAAGCTCCCACCTAAAATCAATGACCCTAAGTCCCAAGCACTTCggt
agaaaaattcaaaatctgaaaaagaattAAGGTAACACATAATGGCTTGT
TTTATCAAGGAAGTGTGATAGCAAAGTATACTAGATAATATGTTAGTTAA
CGAAATTCAAAAGTTCTATTGATAAGTAAGTTACATAGAAAGTCCCACAT
GAAATATTTGAGCCCCCCTTATTTCTCCCCCTATGATCTGAAGATTCGCT
AGTCCCACCTAAACTTCGGAAGCCTAAATCAACAAACTATGCCAGACCAA
AGTCTACTCTTTTTTCGTGAGTTCGTTGACTCTATTTTTCAACCAACGAG
GAGATAAAAATCcaatatcattttcaaaatcaatgGGTTTAAACTCGACC
AAAACCTTTCCAAAGTTATCTTTATCAGAAAGAAATTCTTCTTTAGCTGG
TCCTTCCAAATACCATGCATAATTCCCAGTTTTCTTTAGTTGGTCCTCAG
TGAACGTAGAGATGGTCAGATCggtcattttttcaattttcttgtcTTTC
GGGTCCCATGGCAAAACTGGTTGGACTAACCGGCAATTCTCATTGATGTA
GGCCAGTACACGATATTCTGCGTGTAGATTATACAATCGAAACAGACCAT
ACACGACGTTTTCATTATATGATTTGCCTCCTTCGGGGAAATCAAAAATT
GGACTGCCAAGCCATACCACCATTCGAGCCAATCTGGCAAAGGAGCTTTG
ACGAATTGGTATGAGATTCAGTAGCGTTAATAAAGAGCCCTCGTATTTTG
TCCACGCGTTATTCTTCAGTAATTCACTGCATGACGGATCATCGATCAGT
TTGATATCACCAGCATTGAGACCAAAGGCTTTTTCAACATCAGATACAGG
TAAGGATCCAATGAaagccattttgaatttataatttttaagattttcga
gACTAAAGTTCATTTAAcgtaaaataaaa Run BLAST on NCBI protein sequence of TCONS_00014610-protein >TCONS_00014610-protein ID=TCONS_00014610-protein|Name=TCONS_00014610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MNFSLENLKNYKFKMAFIGSLPVSDVEKAFGLNAGDIKLIDDPSCSELLK
NNAWTKYEGSLLTLLNLIPIRQSSFARLARMVVWLGSPIFDFPEGGKSYN
ENVVYGLFRLYNLHAEYRVLAYINENCRLVQPVLPWDPKDKKIEKMTDLT
ISTFTEDQLKKTGNYAWYLEGPAKEEFLSDKDNFGKVLVEFKPIDFENDI
GFLSPRWLKNRVNELTKKE Run BLAST on NCBI transcript from alignment at sc0000190:309212..310190 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014610 ID=TCONS_00014610|Name=TCONS_00014610|organism=Clytia hemisphaerica|type=transcript|length=979bp|location=Sequence derived from alignment at sc0000190:309212..310190 (Clytia hemisphaerica)
ttttattttacgTTAAATGAACTTTAGTctcgaaaatcttaaaaattata
aattcaaaatggcttTCATTGGATCCTTACCTGTATCTGATGTTGAAAAA
GCCTTTGGTCTCAATGCTGGTGATATCAAACTGATCGATGATCCGTCATG
CAGTGAATTACTGAAGAATAACGCGTGGACAAAATACGAGGGCTCTTTAT
TAACGCTACTGAATCTCATACCAATTCGTCAAAGCTCCTTTGCCAGATTG
GCTCGAATGGTGGTATGGCTTGGCAGTCCAATTTTTGATTTCCCCGAAGG
AGGCAAATCATATAATGAAAACGTCGTGTATGGTCTGTTTCGATTGTATA
ATCTACACGCAGAATATCGTGTACTGGCCTACATCAATGAGAATTGCCGG
TTAGTCCAACCAGTTTTGCCATGGGACCCGAAAgacaagaaaattgaaaa
aatgaccGATCTGACCATCTCTACGTTCACTGAGGACCAACTAAAGAAAA
CTGGGAATTATGCATGGTATTTGGAAGGACCAGCTAAAGAAGAATTTCTT
TCTGATAAAGATAACTTTGGAAAGGTTTTGGTCGAGTTTAAACCcattga
ttttgaaaatgatattgGATTTTTATCTCCTCGTTGGTTGAAAAATAGAG
TCAACGAACTCACGAAAAAAGAGTAGACTTTGGTCTGGCATAGTTTGTTG
ATTTAGGCTTCCGAAGTTTAGGTGGGACTAGCGAATCTTCAGATCATAGG
GGGAGAAATAAGGGGGGCTCAAATATTTCATGTGGGACTTTCTATGTAAC
TTACTTATCAATAGAACTTTTGAATTTCGTTAACTAACATATTATCTAGT
ATACTTTGCTATCACACTTCCTTGATAAAACAAGCCATTATGTGTTACCT
TaattctttttcagattttgaatttttctaccGAAGTGCTTGGGACTTAG
GGTCATTGATTTTAGGTGGGAGCTTTAAG Coding sequence (CDS) from alignment at sc0000190:309212..310190 >TCONS_00014610 ID=TCONS_00014610|Name=TCONS_00014610|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000190:309212..310190 (Clytia hemisphaerica)
ATGAACTTTAGTctcgaaaatcttaaaaattataaattcaaaatggcttT
CATTGGATCCTTACCTGTATCTGATGTTGAAAAAGCCTTTGGTCTCAATG
CTGGTGATATCAAACTGATCGATGATCCGTCATGCAGTGAATTACTGAAG
AATAACGCGTGGACAAAATACGAGGGCTCTTTATTAACGCTACTGAATCT
CATACCAATTCGTCAAAGCTCCTTTGCCAGATTGGCTCGAATGGTGGTAT
GGCTTGGCAGTCCAATTTTTGATTTCCCCGAAGGAGGCAAATCATATAAT
GAAAACGTCGTGTATGGTCTGTTTCGATTGTATAATCTACACGCAGAATA
TCGTGTACTGGCCTACATCAATGAGAATTGCCGGTTAGTCCAACCAGTTT
TGCCATGGGACCCGAAAgacaagaaaattgaaaaaatgaccGATCTGACC
ATCTCTACGTTCACTGAGGACCAACTAAAGAAAACTGGGAATTATGCATG
GTATTTGGAAGGACCAGCTAAAGAAGAATTTCTTTCTGATAAAGATAACT
TTGGAAAGGTTTTGGTCGAGTTTAAACCcattgattttgaaaatgatatt
gGATTTTTATCTCCTCGTTGGTTGAAAAATAGAGTCAACGAACTCACGAA
AAAAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014610-exon-sc0000190-1491911889:309212..310190 | TCONS_00014610-exon-sc0000190-1491911889:309212..310190 | Clytia hemisphaerica | exon |
| TCONS_00014610-exon-sc0000190-1510915933:309212..310190 | TCONS_00014610-exon-sc0000190-1510915933:309212..310190 | Clytia hemisphaerica | exon |
| TCONS_00014610-exon-sc0000190-1575043694:309212..310190 | TCONS_00014610-exon-sc0000190-1575043694:309212..310190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000190 | supercontig | sc0000190:309212..310190 . |
Blast
The following BLAST results are available for this feature:
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