TCONS_00014608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014608
Unique NameTCONS_00014608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014608 ID=TCONS_00014608|Name=TCONS_00014608|organism=Clytia hemisphaerica|type=transcript|length=584bp
CACAGTAAGCCCTATGCCCGCGCATCCATAAAATAAACCAACGCACAAGA
GACGAGATATGATGAGATTTCCCAAATTATACAAAGGAATGATGTTCCGT
ATTATCTTTATCATGTTATTGTTAAACAGCACACTGCTTTCACCAGCCTT
TACGAAAACATCCGGCTCAATATAAAAAGACATGTACAGTTTTTCACATG
GTGTTGCAATTGAAAGTACAACACTCTCTTTAGGTGattttttttgtaca
ttttgagtgattttttcaaacaatttcctaGTCTAATGTTTGTTCTTTTC
GTGTTATGTTATGACTCAATTGAAATACAATGCCACGGTGACATACATAC
TCTCTCAaaatcactctctctaattcgatcttcaagggtcAAAGCTTttc
tgttcgaattacagaaagattcaaatgATAGATTTAGAGAGAGTTGCCTA
GACATATTTTTGACTGGCTACAAAAACTCTAAACTCTAAACTCTAAacta
tttttgcattttcagcGTGAGAAATTTGTGATTTGTCCCCTCTCAAaaga
taaagataaaaaaaccCTTGCATCTGTTATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000190:174015..174598

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014608 ID=TCONS_00014608|Name=TCONS_00014608|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at sc0000190:174015..174598 (Clytia hemisphaerica)
CTTTATAACAGATGCAAGggtttttttatctttatcttTTGAGAGGGGAC
AAATCACAAATTTCTCACgctgaaaatgcaaaaatagtTTAGAGTTTAGA
GTTTAGAGTTTTTGTAGCCAGTCAAAAATATGTCTAGGCAACTCTCTCTA
AATCTATcatttgaatctttctgtaattcgaacagaaAAGCTTTgaccct
tgaagatcgaattagagagagtgatttTGAGAGAGTATGTATGTCACCGT
GGCATTGTATTTCAATTGAGTCATAACATAACACGAAAAGAACAAACATT
AGACtaggaaattgtttgaaaaaatcactcaaaatgtacaaaaaaaatCA
CCTAAAGAGAGTGTTGTACTTTCAATTGCAACACCATGTGAAAAACTGTA
CATGTCTTTTTATATTGAGCCGGATGTTTTCGTAAAGGCTGGTGAAAGCA
GTGTGCTGTTTAACAATAACATGATAAAGATAATACGGAACATCATTCCT
TTGTATAATTTGGGAAATCTCATCATATCTCGTCTCTTGTGCGTTGGTTT
ATTTTATGGATGCGCGGGCATAGGGCTTACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008174XLOC_008174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014608-exon-sc0000190-1491911889:174015..174598TCONS_00014608-exon-sc0000190-1491911889:174015..174598Clytia hemisphaericaexon
TCONS_00014608-exon-sc0000190-1510915933:174015..174598TCONS_00014608-exon-sc0000190-1510915933:174015..174598Clytia hemisphaericaexon
TCONS_00014608-exon-sc0000190-1575043694:174015..174598TCONS_00014608-exon-sc0000190-1575043694:174015..174598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000190supercontigsc0000190:174015..174598 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.100818	0.608163	0.341613	1.3553	0.0987508	0	0.756095	0.125841	0.784121	0.752096	0.345906	0	0.145589	0	0.210478	0	0.13385	0	0.0986194	0	0	0.389176	0.553786	0.210013	0.427941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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