TCONS_00014522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014522
Unique NameTCONS_00014522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014522 ID=TCONS_00014522|Name=TCONS_00014522|organism=Clytia hemisphaerica|type=transcript|length=422bp
aaaccatccttattggattttttaaccttggaacaaaaaaaattctatcc
ccattgagatttcaattgGAATCTTTAACACCACAGAGGAAAAAAGTTCT
AGTTGGGATGTGTGACGAGGGGTGTGATTAAGAAATGATTCCACGTTTCA
AGTGCTTCCCCTCTCCATCGTTTTGTAACGGGCTTGTACGTTTGCCAGTC
TCTCACCAATGAAAGCTTCCCTGGGAGCGAGTAGATCTGACTGTGAAATC
CTTTCGTATTTCTTTGCTCTTTTTCAAGAGAACAGACcagattttctttc
tttctacaACAATGTCCCACCGATTATAGAATATTTGCTTTCCTTTCCTA
CATAATTCTGATCGTTCGAAGAATCTATATGATTACACGATCATATTTTT
AACATCAATATTGATGAACTGC
Run BLAST on NCBI

transcript from alignment at sc0000188:238638..239059

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014522 ID=TCONS_00014522|Name=TCONS_00014522|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at sc0000188:238638..239059 (Clytia hemisphaerica)
GCAGTTCATCAATATTGATGTTAAAAATATGATCGTGTAATCATATAGAT
TCTTCGAACGATCAGAATTATGTAGGAAAGGAAAGCAAATATTCTATAAT
CGGTGGGACATTGTtgtagaaagaaagaaaatctgGTCTGTTCTCTTGAA
AAAGAGCAAAGAAATACGAAAGGATTTCACAGTCAGATCTACTCGCTCCC
AGGGAAGCTTTCATTGGTGAGAGACTGGCAAACGTACAAGCCCGTTACAA
AACGATGGAGAGGGGAAGCACTTGAAACGTGGAATCATTTCTTAATCACA
CCCCTCGTCACACATCCCAACTAGAACTTTTTTCCTCTGTGGTGTTAAAG
ATTCcaattgaaatctcaatggggatagaattttttttgttccaaggtta
aaaaatccaataaggatggttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008128XLOC_008128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014522-exon-sc0000188-1491911889:238638..239059TCONS_00014522-exon-sc0000188-1491911889:238638..239059Clytia hemisphaericaexon
TCONS_00014522-exon-sc0000188-1510915933:238638..239059TCONS_00014522-exon-sc0000188-1510915933:238638..239059Clytia hemisphaericaexon
TCONS_00014522-exon-sc0000188-1575043694:238638..239059TCONS_00014522-exon-sc0000188-1575043694:238638..239059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:238638..239059 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3325	0.487273	0.37718	0.738024	0.449237	0	0	0	0	0	0	0	0	0	0	0	0	0.12816	0	0	0	0	0	0	0	0	0	0	0.184871	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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