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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014511 ID=TCONS_00014511|Name=TCONS_00014511|organism=Clytia hemisphaerica|type=transcript|length=1069bp
aaagaatatttcaagagcatgaaattttggtttctaaacgtttttttata
agaaacaaacgactaattttaatcgATCGTCACTATtcgtgttctgaatg
attgtttaatggtcacgttcACGTAATCAATTATATGTGtcaaatgcata
accaggtaggtccataaaagtatcacttgttacttttttaatttgttctt
ggATATGTTTCTCACAAGTCAACTGAGTGTCTAGGGTGACTCCAAGGTCT
TTAACTTCGTCTTTATTTTCGATCAACGTTGCTGTGTCAGAAAAATAGCG
AGAACTTTGCTTCAGAGCGTCGTTTTTCCCGTAGGTAAGGTGCTCAAATA
CAactgaaaaccaaaaaaatagtcaaaaattttggaatcaTGTCAAAAAG
TTGTTACCAAACTCAAACATTAAATCAAAAACAGTCGAAAAGTtacaaaa
caatggaattacCGTAACAAATGCCAAAGAGAAAGCCAATATGTTTTGCC
ACTACTTTGCTGCCCCTCGTTGAATTTGTCTGGAGACCAATCAAAAGATT
TCCGATCCGCACCGACAAAACTTTCAAGTTTGATCCAGTAGAAAGCGACG
AAATCTTTAAACTCCTCCAAGGACTCAAACGCAAAAAAGCTACTGGTATC
GATCAGCTACCGTCAAACCTACTCAAAGATTCTGCACCAGTGATCGACAA
ACCACTAGCACACATCGTTATCTACATCAACATTTCCAACAGAGTGGAAA
AATCACCCCACTCTTCAGCCGGCTCCATCTCTTCAGCGGAAATTATGTTC
CGATAGTTTATATTTGACAATACAATACAAGACGGGTGAATACAATATGA
ATTTCTGTAGTAAGCTGTTGAGTGTTCAATGTTGCGATTCTGTCTGTAGA
AGTGGTCTTTTTTTGGGACACTCTGTTTACCTGTTTCTCCTTCTTCACTT
CTTCAATTGGCAAAATTCTCTCCTTGATGAGTGAATCTGTTCTTTATATT
TAATAGAGCtcttcataaattacgtcacgaacatcacttgcctcgtattc
aaacaattaccatggtgac Run BLAST on NCBI protein sequence of TCONS_00014511-protein >TCONS_00014511-protein ID=TCONS_00014511-protein|Name=TCONS_00014511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MPKRKPICFATTLLPLVEFVWRPIKRFPIRTDKTFKFDPVESDEIFKLLQ
GLKRKKATGIDQLPSNLLKDSAPVIDKPLAHIVIYINISNRVEKSPHSSA
GSISSAEIMFR Run BLAST on NCBI transcript from alignment at sc0000188:48775..49843 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014511 ID=TCONS_00014511|Name=TCONS_00014511|organism=Clytia hemisphaerica|type=transcript|length=1069bp|location=Sequence derived from alignment at sc0000188:48775..49843 (Clytia hemisphaerica)
gtcaccatggtaattgtttgaatacgaggcaagtgatgttcgtgacgtaa
tttatgaagaGCTCTATTAAATATAAAGAACAGATTCACTCATCAAGGAG
AGAATTTTGCCAATTGAAGAAGTGAAGAAGGAGAAACAGGTAAACAGAGT
GTCCCAAAAAAAGACCACTTCTACAGACAGAATCGCAACATTGAACACTC
AACAGCTTACTACAGAAATTCATATTGTATTCACCCGTCTTGTATTGTAT
TGTCAAATATAAACTATCGGAACATAATTTCCGCTGAAGAGATGGAGCCG
GCTGAAGAGTGGGGTGATTTTTCCACTCTGTTGGAAATGTTGATGTAGAT
AACGATGTGTGCTAGTGGTTTGTCGATCACTGGTGCAGAATCTTTGAGTA
GGTTTGACGGTAGCTGATCGATACCAGTAGCTTTTTTGCGTTTGAGTCCT
TGGAGGAGTTTAAAGATTTCGTCGCTTTCTACTGGATCAAACTTGAAAGT
TTTGTCGGTGCGGATCGGAAATCTTTTGATTGGTCTCCAGACAAATTCAA
CGAGGGGCAGCAAAGTAGTGGCAAAACATATTGGCTTTCTCTTTGGCATT
TGTTACGgtaattccattgttttgtaACTTTTCGACTGTTTTTGATTTAA
TGTTTGAGTTTGGTAACAACTTTTTGACAtgattccaaaatttttgacta
tttttttggttttcagtTGTATTTGAGCACCTTACCTACGGGAAAAACGA
CGCTCTGAAGCAAAGTTCTCGCTATTTTTCTGACACAGCAACGTTGATCG
AAAATAAAGACGAAGTTAAAGACCTTGGAGTCACCCTAGACACTCAGTTG
ACTTGTGAGAAACATATccaagaacaaattaaaaaagtaacaagtgatac
ttttatggacctacctggttatgcatttgaCACATATAATTGATTACGTg
aacgtgaccattaaacaatcattcagaacacgaATAGTGACGATcgatta
aaattagtcgtttgtttcttataaaaaaacgtttagaaaccaaaatttca
tgctcttgaaatattcttt Coding sequence (CDS) from alignment at sc0000188:48775..49843 >TCONS_00014511 ID=TCONS_00014511|Name=TCONS_00014511|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000188:48775..49843 (Clytia hemisphaerica)
CTATCGGAACATAATTTCCGCTGAAGAGATGGAGCCGGCTGAAGAGTGGG
GTGATTTTTCCACTCTGTTGGAAATGTTGATGTAGATAACGATGTGTGCT
AGTGGTTTGTCGATCACTGGTGCAGAATCTTTGAGTAGGTTTGACGGTAG
CTGATCGATACCAGTAGCTTTTTTGCGTTTGAGTCCTTGGAGGAGTTTAA
AGATTTCGTCGCTTTCTACTGGATCAAACTTGAAAGTTTTGTCGGTGCGG
ATCGGAAATCTTTTGATTGGTCTCCAGACAAATTCAACGAGGGGCAGCAA
AGTAGTGGCAAAACATATTGGCTTTCTCTTTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014511-exon-sc0000188-1491911889:48775..49843 | TCONS_00014511-exon-sc0000188-1491911889:48775..49843 | Clytia hemisphaerica | exon |
| TCONS_00014511-exon-sc0000188-1510915933:48775..49843 | TCONS_00014511-exon-sc0000188-1510915933:48775..49843 | Clytia hemisphaerica | exon |
| TCONS_00014511-exon-sc0000188-1575043694:48775..49843 | TCONS_00014511-exon-sc0000188-1575043694:48775..49843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:48775..49843 . |
Blast
The following BLAST results are available for this feature:
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