TCONS_00014502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014502
Unique NameTCONS_00014502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014502 ID=TCONS_00014502|Name=TCONS_00014502|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ATTTGTTTGAAAAGCGGAAGTGAACCACAACAAAGGGAAGAACAttcact
ttcttcttcttcacctTATTATAACAAAGAATATTTAATGAAAGACCATT
CAAACACTTTTCCCGAAATCAAAAGATACTATAATAAACATGATTTAGGA
TTGAGTTAATTGAAGAGAGAAAACATTTAGGGATGTAAAGTGAATGAAAG
GTTGAAGCCAACTCAATAAgcattcatcaaaatcaatcagTGGGTTATGA
AATAAGAACCGTTAAACACAGAGTAATACAAAcgtgaaatatttttagat
gatttcttcttctttatttctCAACTCCATCATTTCACAGAAGCAGAAGT
GAAAGATGGAAGAACTCATCGCACTCAACCGATCAGCCAATCACACCTTC
AACAGTACCTACCCCACCATGCTATCCTTCTTCTCTAGAGAAACCACCAC
CTTTTATTATTGCGCTTTTTCGCTGATGTTTGTCATCGGTAGCGTTGGCA
ACAGTGCAGTCATTTACATCATCACTTTGAAGCATCAAAACAAGAAATCC
AATTTCGATATTTACATCATTTCGCTTGCCATCACTGACTTATTAGCGTC
GATATTTCTTCCTGTGGTCATGATACATGATTTGTATACAGAGTGGAACC
ATTGGCACTTGGGAAGTTTTGGGTGTAAGATATTGGTTCCCATGCCACAC
ATCAATTCTTTGGTCTCAGCTCTCATGTTGGTCGTCATTTCTTTCGACAG
ATTAAGGGTGATTCGGCAAACCAGTTTGAAGCGTCGTTCACGCAGAATCA
CTATCGCAGAAGTTGTTGTAGTCTGGATCATTTCCATCCTGATCGTCTCT
CCGTACATTTACTTCCTGGAGGTACAAAACGGGTTCTGTAAAGACCATTG
GGAGAGGATCTACCGTTTCGTTTATTACACTGTTCTGCAGTTCTTCTCCT
GCTTCTTCCCCATCATCATCATGATCGCTACCTACGCCACCAGTGCTCAC
ATCCTTCTCCACAACAAATTTCCCGGTGATTCAGTCTACATGATGAAACG
GAGACGTCGCAAGCAAAACCAACGGGTGACGCAAATGTTCGGCATCATTG
TCATCATCTTTTTCGTCATGACGACGCCGTATATGATTTCCTTCTTTATC
GTCGCTTATTACGGAACGTTCGATATCCAAACTTACCGCGTCAAAGGGAA
ATTATTGTTTGATTTACAATATGCATTTTATACACTGATGGGTTTCAATG
CTTGCATCAACCCCTTTATTTATGCTATGCGTTATAAGGATATTAGCAGA
ACTTTCAAGAGGTTTCTTTCAACGCAAAGAAGTGCAGACAAAATGAAACG
AAAGTATGGAGTGGTCAAAATGGTGGATAGGAAATATGGATTCGTTGGTA
TCAGTGCCAAGTTGATACAACaggaagattttttcaaaggaGAAGCGCTT
GATAGTGGATAGACCTATAGAT
Run BLAST on NCBI

protein sequence of TCONS_00014502-protein

>TCONS_00014502-protein ID=TCONS_00014502-protein|Name=TCONS_00014502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MEELIALNRSANHTFNSTYPTMLSFFSRETTTFYYCAFSLMFVIGSVGNS
AVIYIITLKHQNKKSNFDIYIISLAITDLLASIFLPVVMIHDLYTEWNHW
HLGSFGCKILVPMPHINSLVSALMLVVISFDRLRVIRQTSLKRRSRRITI
AEVVVVWIISILIVSPYIYFLEVQNGFCKDHWERIYRFVYYTVLQFFSCF
FPIIIMIATYATSAHILLHNKFPGDSVYMMKRRRRKQNQRVTQMFGIIVI
IFFVMTTPYMISFFIVAYYGTFDIQTYRVKGKLLFDLQYAFYTLMGFNAC
INPFIYAMRYKDISRTFKRFLSTQRSADKMKRKYGVVKMVDRKYGFVGIS
AKLIQQEDFFKGEALDSG
Run BLAST on NCBI

transcript from alignment at sc0000188:118656..122557-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014502 ID=TCONS_00014502|Name=TCONS_00014502|organism=Clytia hemisphaerica|type=transcript|length=3902bp|location=Sequence derived from alignment at sc0000188:118656..122557- (Clytia hemisphaerica)
ATTTGTTTGAAAAGCGGAAGTGAACCACAACAAAGGGAAGAACATTCACT
TTCTTCTTCTTCACCTTATTATAACAAAGAATATTTAATGAAAGACCATT
CAAACACTTTTCCCGAAATCAAAAGATACTATAATAAACATGATTTAGGA
TTGAGTTAATTGAAGAGAGAAAACATTTAGGGATGTAAAGTGAATGAAAG
GTTGAAGCCAACTCAATAAGCATTCATCAAAATCAATCAGTGGGTTATGA
AATAAGAACCGTTAAACACAGAGTAATACAAACGTGAAATATTTTTAGAT
GATTTCTTCTTCTTTATTTCTCAACTCCATCATTTCACAGAAGCAGAAGT
GAAAGATGGAAGAACTCATCGCACTCAACCGATCAGCCAATCACACCTTC
AACAGTACCTACCCCACCATGCTATCCTTCTTCTCTAGAGAAACCACCAC
CTTTTATTATTGCGCTTTTTCGCTGATGTTTGTCATCGGTAGCGTTGGCA
ACAGTGCAGTCATTTACATCATCACTTTGAAGCATCAAAACAAGAAATCC
AATTTCGATATTTACATCATTTCGCTTGCCATCACTGACTTATTAGCGTC
GATATTTCTTCCTGTGGTCATGATACATGATTTGTATACAGAGTGGAACC
ATTGGCACTTGGGAAGTTTTGGGTGTAAGATATTGGTTCCCATGCCACAC
ATCAATTCTTTGGTCTCAGCTCTCATGTTGGTCGTCATTTCTTTCGACAG
ATTAAGGTATGTCAATGTTCATTGAGTTGGGTTTTTAACAGTTTTCACCA
ACTAATTACGATAAGTAAGGGTAACACGATTGGTAAGACCCCGGGAGCGA
TTTAAGTATCGGTGATCATTTTTAGTGCCTTAGCTCCGTATGCCAAAGAT
CAGTCAGTGACGTAAAACGATGGAGTATACCTTCAGCTTGAAATTTTTAA
GTTTGAAAATACCCTCACTTTCTGTCGCTTTTTATCGCTTCTTATCGGCC
AGAAGAAGCCAATCTGTTTGTTTACTTTTAAGATAATAACAGAACTTCGT
TTCCGGGTACATCGAGAAACTTCACCCCATACAGTAAAAGAGGTTTCACT
AATGATCGATTCTCTTTCGTGTTCAGGGTGATTCGGCAAACCAGTTTGAA
GCGTCGTTCACGCAGAATCACTATCGCAGAAGTTGTTGTAGTCTGGATCA
TTTCCATCCTGATCGTCTCTCCGTACATTTACTTCCTGGAGGTACAAAAC
GGGTTCTGTAAAGACCATTGGGAGAGGATCTACCGTTTCGTTTATTACAC
TGTTCTGCAGTTCTTCTCCTGCTTCTTCCCCATCATCATCATGATCGCTA
CCTACGCCACCAGTGCTCACATCCTTCTCCACAACAAATTTCCCGGTGAT
TCAGTCTACATGATGAAACGGAGACGTCGCAAGCAAAACCAACGGGTGAC
GCAAATGTTCGGCATCATTGTCATCATCTTTTTCGTCATGACGACGCCGT
ATATGATTTCCTTCTTTATCGTCGCTTATTACGGAACGTTCGATATCCAA
ACTTACCGCGTCAAAGGGAAATTATTGTTTGATTTACAATATGCATTTTA
TACACTGATGGGTTTCAATGCTTGCATCAACCCCTTTATTTATGCTATGC
GTTATAAGGATATTAGCAGAACTTTCAAGAGGTTTCTTTCAACGCAAAGA
AGTGCAGACAAAATGAAACGAAAGTATGGAGTGGTCAAAATGGTGGATAG
GAAATATGGATTCGTTGGTATCAGTGCCAAGTTGATACAACAGGAAGATT
TTTTCAAAGGAGAAGCGCTTGATAGTGGATAGACCTATAGATACCTTGAA
TAATTTAATTTAGTAAAAGAACTAACTATAATTTTAGAAATCCCATAGTT
CGTTTGTAGGAATTTGTAAGCAAACTGTCAAACAAAAATTCGAACCTGAT
CCGTGATATTCTGTCTTATATGCGACTCTTTTTCGATCTTCAACTGCAAC
ACGGCCATCTTTAGAAGTTTCTCTTCACTCAGTAGTTTCTTTTGCAAAGT
TTCGATTTCTTGGAGAAGTAAAGGTGTGATGTTTTCAAGACCACGTTTTC
GAGCGAAAGCAGCGGCTGCTGAAGTGTGAATGTAATGCATCCAATTCTCT
GTCTCTGTTTGACTTGTCGCCTAATGTGTAATGACAAAAAGTCAGAGACA
AGTATGTACAACGATGAGACATTTCATAATTGCATCGAAGACTTCAGTCT
CTAATAGGGAACTACTGAACAACTTTAAGGCGTATAATATGTTTTGCAAG
TTTTTGATATTTGGAATTTCACTTTAATAGTTGAAGTCTTCAAGTTTTGA
AATCCAAATAAACATAAGAGCCAGTATTCATAGTCAATTTTAGCCATTCA
ACCTCGCTTAAATTAAGCTATATTTGAAATAAAAAATGTTGACAATCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCAGGGTGATTCGGCAAA
CCAGTTTGAAGCGTCGTTCACGCAGAATCACTATCGCAGAAGTTGTTGTA
GTCTGGATCATTTCCATCCTGATCGTCTCTCCGTACATTTACTTCCTGGA
GGTACAAAACGGGTTCTGTAAAGACCATTGGGAGAGGATCTACCGTTTCG
TTTATTACACTGTTCTGCAGTTCTTCTCCTGCTTCTTCCCCATCATCATC
ATGATCGCTACCTACGCCACCAGTGCTCACATCCTTCTCCACAACAAATT
TCCCGGTGATTCAGTCTACATGATGAAACGGAGACGTCGCAAGCAAAACC
AACGGGTGACGCAAATGTTCGGCATCATTGTCATCATCTTTTTCGTCATG
ACGACGCCGTATATGATTTCCTTCTTTATCGTCGCTTATTACGGAACGTT
CGATATCCAAACTTACCGCGTCAAAGGGAAATTATTGTTTGATTTACAAT
ATGCATTTTATACACTGATGGGTTTCAATGCTTGCATCAACCCCTTTATT
TATGCTATGCGTTATAAGGATATTAGCAGAACTTTCAAGAGGTTTCTTTC
AACGCAAAGAAGTGCAGACAAAATGAAACGAAAGTATGGAGTGGTCAAAA
TGGTGGATAGGAAATATGGATTCGTTGGTATCAGTGCCAAGTTGATACAA
CAGGAAGATTTTTTCAAAGGAGAAGCGCTTGATAGTGGATAGACCTATAG
AT

Coding sequence (CDS) from alignment at sc0000188:118656..122557-

>TCONS_00014502 ID=TCONS_00014502|Name=TCONS_00014502|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000188:118656..122557- (Clytia hemisphaerica)
GGTGATTCGGCAAACCAGTTTGAAGCGTCGTTCACGCAGAATCACTATCG
CAGAAGTTGTTGTAGTCTGGATCATTTCCATCCTGATCGTCTCTCCGTAC
ATTTACTTCCTGGAGGTACAAAACGGGTTCTGTAAAGACCATTGGGAGAG
GATCTACCGTTTCGTTTATTACACTGTTCTGCAGTTCTTCTCCTGCTTCT
TCCCCATCATCATCATGATCGCTACCTACGCCACCAGTGCTCACATCCTT
CTCCACAACAAATTTCCCGGTGATTCAGTCTACATGATGAAACGGAGACG
TCGCAAGCAAAACCAACGGGTGACGCAAATGTTCGGCATCATTGTCATCA
TCTTTTTCGTCATGACGACGCCGTATATGATTTCCTTCTTTATCGTCGCT
TATTACGGAACGTTCGATATCCAAACTTACCGCGTCAAAGGGAAATTATT
GTTTGATTTACAATATGCATTTTATACACTGATGGGTTTCAATGCTTGCA
TCAACCCCTTTATTTATGCTATGCGTTATAAGGATATTAGCAGAACTTTC
AAGAGGTTTCTTTCAACGCAAAGAAGTGCAGACAAAATGAAACGAAAGTA
TGGAGTGGTCAAAATGGTGGATAGGAAATATGGATTCGTTGGTATCAGTG
CCAAGTTGATACAACAGGAAGATTTTTTCAAAGGAGAAGCGCTTGATAGT
GGATAGATGGAAGAACTCATCGCACTCAACCGATCAGCCAATCACACCTT
CAACAGTACCTACCCCACCATGCTATCCTTCTTCTCTAGAGAAACCACCA
CCTTTTATTATTGCGCTTTTTCGCTGATGTTTGTCATCGGTAGCGTTGGC
AACAGTGCAGTCATTTACATCATCACTTTGAAGCATCAAAACAAGAAATC
CAATTTCGATATTTACATCATTTCGCTTGCCATCACTGACTTATTAGCGT
CGATATTTCTTCCTGTGGTCATGATACATGATTTGTATACAGAGTGGAAC
CATTGGCACTTGGGAAGTTTTGGGTGTAAGATATTGGTTCCCATGCCACA
CATCAATTCTTTGGTCTCAGCTCTCATGTTGGTCGTCATTTCTTTCGACA
GATTAAGGGTGATTCGGCAAACCAGTTTGAAGCGTCGTTCACGCAGAATC
ACTATCGCAGAAGTTGTTGTAGTCTGGATCATTTCCATCCTGATCGTCTC
TCCGTACATTTACTTCCTGGAGGTACAAAACGGGTTCTGTAAAGACCATT
GGGAGAGGATCTACCGTTTCGTTTATTACACTGTTCTGCAGTTCTTCTCC
TGCTTCTTCCCCATCATCATCATGATCGCTACCTACGCCACCAGTGCTCA
CATCCTTCTCCACAACAAATTTCCCGGTGATTCAGTCTACATGATGAAAC
GGAGACGTCGCAAGCAAAACCAACGGGTGACGCAAATGTTCGGCATCATT
GTCATCATCTTTTTCGTCATGACGACGCCGTATATGATTTCCTTCTTTAT
CGTCGCTTATTACGGAACGTTCGATATCCAAACTTACCGCGTCAAAGGGA
AATTATTGTTTGATTTACAATATGCATTTTATACACTGATGGGTTTCAAT
GCTTGCATCAACCCCTTTATTTATGCTATGCGTTATAAGGATATTAGCAG
AACTTTCAAGAGGTTTCTTTCAACGCAAAGAAGTGCAGACAAAATGAAAC
GAAAGTATGGAGTGGTCAAAATGGTGGATAGGAAATATGGATTCGTTGGT
ATCAGTGCCAAGTTGATACAACAGGAAGATTTTTTCAAAGGAGAAGCGCT
TGATAGTGGATAGATGGAAGAACTCATCGCACTCAACCGATCAGCCAATC
ACACCTTCAACAGTACCTACCCCACCATGCTATCCTTCTTCTCTAGAGAA
ACCACCACCTTTTATTATTGCGCTTTTTCGCTGATGTTTGTCATCGGTAG
CGTTGGCAACAGTGCAGTCATTTACATCATCACTTTGAAGCATCAAAACA
AGAAATCCAATTTCGATATTTACATCATTTCGCTTGCCATCACTGACTTA
TTAGCGTCGATATTTCTTCCTGTGGTCATGATACATGATTTGTATACAGA
GTGGAACCATTGGCACTTGGGAAGTTTTGGGTGTAAGATATTGGTTCCCA
TGCCACACATCAATTCTTTGGTCTCAGCTCTCATGTTGGTCGTCATTTCT
TTCGACAGATTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008111XLOC_008111Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014502-proteinTCONS_00014502-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014502-exon-sc0000188-1575043694:121802..122557TCONS_00014502-exon-sc0000188-1575043694:121802..122557Clytia hemisphaericaexon
TCONS_00014502-exon-sc0000188-1575043694:118656..119371TCONS_00014502-exon-sc0000188-1575043694:118656..119371Clytia hemisphaericaexon
TCONS_00014502-exon-sc0000188-1510915933:121802..122557TCONS_00014502-exon-sc0000188-1510915933:121802..122557Clytia hemisphaericaexon
TCONS_00014502-exon-sc0000188-1510915933:118656..119371TCONS_00014502-exon-sc0000188-1510915933:118656..119371Clytia hemisphaericaexon
TCONS_00014502-exon-sc0000188-1491911889:121802..122557TCONS_00014502-exon-sc0000188-1491911889:121802..122557Clytia hemisphaericaexon
TCONS_00014502-exon-sc0000188-1491911889:118656..119371TCONS_00014502-exon-sc0000188-1491911889:118656..119371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:118656..122557 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0287189	0.121351	1.0328	1.05896e-09	0.075762	0	0	0	0	0	0	0	0.352915	0.315297	0.0159505	0.0342346	0.149466	0.459127	0.586916	2.23236	2.85083	1.64891	0.064415	0.497782	0.211113	0.0709316	0.038517	0	0.0623555	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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