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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014472 ID=TCONS_00014472|Name=TCONS_00014472|organism=Clytia hemisphaerica|type=transcript|length=1321bp
acaacaaaatacatcccttggtctttggGTTGGTGGTCATCCAATCATTC
GTGAGATGGCagatgaaaagaagaaattgtTGGCTAGCCCTGATGATGAC
TTGGGTTACAAGAACAAAGGGATCATATCCAACGATGAGGAGCACGACCT
CTCTTTTGCTCTGAAGATCATTAAAGAGCAAGGTGACCTCCTCAAGACCA
TGCAAAATGATATGGACGAGCAACGAAGTTTGAACGCCAAGTTGTCAAGT
AAACTGGAAGATCTGACGCGAGATATTCAAATACTCAACGATTCACATTC
CAAAGAAACGATCAAGAAAGATGAGCAAATTGATAAATTGAAAAACACTC
TGGAAGCTAAGACGGAATTCCAAGCTTCCTTGATTGATGAGTTGCGATAT
CAAATACAAAGCATGAGAAATAAAATGGACTCCAAACGGCTTACTGAGAA
TGGTACATCTTCAGGGAAAGCTATCGTCAAACATAACGAAATTCTTTCAC
CGACTAAGAAGTTATTGAGGAATAATTCTGAGGACAGTATCTCGAGTAAT
GGATCAAATCCGTGTCTTCTATCGAGAACCATCGGTCCTCAACGCGCAGA
ATATGTGTGGAGAATAAATGCCTTCACCAAAAAGCTGAAGAGAATTCAGT
CCAATAGCTACGATGACCCAAGTAGATCAGAACCTTTTGTAACTGGTCCA
AATGGATATCGTTTGTCCATGTGGGCTTACTTAAATGGGCGAGGAAAAGG
GTTCGATAAATGTCTTGCGGTGTATGTCCGAATTATGGCTGGTGAATATG
ACCCTGTGCTACCGTGGCCCATCAAACCGTGTTATACTTTCCAATTGATC
AGCCAAGCGCAAGATCCCAATAAGCGATTAGATCTTGTCCGCGTAAGAGA
CTTGTCAGTGAAACACAGCGGTATTTCGCGACCTCAGAAAGACGATAAAT
CCATTATTGTTGGGTTCGATGATTTTATTGTTCACGAGGACTTGGAGAAG
AAAGAATATTTAGCGGACGATTCTTTGTTCATCAAATGTATCGTTGAAAT
TTAATTGCTGCTGGTCTGATTCTCATAATTTTTTAGACATGAAACTCTGC
TATTTGTTGTCGATGGGATTCATAGAATTCTACATCGATGTATTTTATAC
TCATAATTTATTATTCtccattttcaaaatgatcttGATACGATTGTGCT
AATTTTTCGAGAGGTATTTTTTAGAAAGAATGTTTTAATTAAAATGTATC
AATACATTTTCACTATCCTACTCTGTATACAGCTACCACAAAAAAATCCC
GTCTTAGAATTCCCCAACCCG Run BLAST on NCBI transcript from alignment at sc0000188:28221..37008+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014472 ID=TCONS_00014472|Name=TCONS_00014472|organism=Clytia hemisphaerica|type=transcript|length=8788bp|location=Sequence derived from alignment at sc0000188:28221..37008+ (Clytia hemisphaerica)
acaacaaaatacatcccttggtctttgggtttgtttctgacatttttcca
tcaaagaatatcgatctctttccttttccccttgggcgcgcgagaaaaaa
atgattagcttgcATTCTTGCGAGGGGCAAATTAAGATGAGGcagcaatc
ttgcactgagggtgctacttagtttagGACCCTgctgacgcaccggactt
aacaaaCACCGGACAcacgaaagtccggtgtaaaatgagaatttttttta
ccaccagtCAAtcgctacaccggacttaaggaagtggGATGTCGGAGAAG
GAtgtttttccaccggacaatcaaaacaccggacatgaccagtccggtgc
gtccggtgttttttaattttttgtttcataaatgtccggcgtacaaaatt
ccctgtattagggtgcgcactcgtcaggattttttgcgcggaacgaggaa
gaatttacaaaaatgaacttcaatgcattagtacttacctttaaatcaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgaaaatggaataactttgggaatacttaaccaattctaat
aaatgacccctcatttttctcacaaaggtaaggactttcaaataaaatta
gtttggtttttttAAAATTGAGGGGGAAATTTTGTCCTGTCCACCCTACC
TGTATGCAACACCaaactgacaccggacttattgcgtccggtgtagcgaa
aggactttttgccaccggacaaatacaccggacagtccagTGCGTTGGCA
GGGTCAGTTTCCACCCTATTTTGTGCAATGTCGTTTTGTAAGTGTTAATT
TTCTGacagatacaaatagtatattgaatattattaacttatttttttaa
gtatttttgagctcaaatttaaatattcggttaaataaaaaacaaatgac
agcagttctgtttttccaCCGGGAAAAGTTGtcttgccgacttagctatt
ttacaaatttaggaaagaactcccataggaattccgatacataacccgat
tggtttaTTTCGGAAcgagtcataatggcagataattttaaaagtttctg
tgTAAATGTGTGCCatttatcaatgttgatggcttgttgattctttaaag
aaaaaagataacaaatatagctttttctaatcctggaatatcgaggttcc
agctacattGATTATTGACCAATTTGCCGTGTACTCTGTAAACCAGACGG
TACTGTGCGAGATTgcataacttgcatcagtggaggctaaggGCCCGTCa
acaaacgattttcttttttttaatggcttTGGCCGTAAGGGGTGGGACCC
TCACtgcaatgccgttaaaaaagttcaaaaaaaaagggaaagtctcactt
acaaatttcatcagttCAAAAAGTAGAAATATGTGAAGAAAGGCTAAGAC
CAAAGTAACCACACGACATTCACCTTATTCCCAGTCACCAATTAATGCTT
CTACgagaaaaatgactgaaaaatatttgaaagttccaatttcagccatt
ttcagccaaatccaactttTTTTCTTGCTGGGGCTTCAAGGAAACTTATC
CTATCCATGTGTAAACATTCCCGTATGTTTCTGATGTACTTGACTATCGG
TTGTCGAACCGGGATAAGACAGGGGTTATGCAAGAAAAACCATCATTTCC
ACCTCAAAAGGTGACTTTCGCTGCCAATTTGATAGAATTGTTCCCCTATA
AATTTCCTCCCTTTCAGTAGGTCTTCCTCTATCTTATATGCttcaaaaaa
gccaaaaatattGCCCTAAAAGCTTAGCCTCACAAAGCTCCAGCTTAAAA
TATAACCCCCTGGTTGAATCTTTGTATTCTTATCCTATGAATATAACAGT
ACAGCTATTCTACGGAAATTGCTGTCATGTGACTTTACTCTACCGTGTGA
TACAAATTGCGCATTTTCATTGGATGTTGGAAATTTATTTGTCACGTGAC
AAGAAGTTCCGACTtcacattaaaataaaataaaatggtgGAAGGACGTT
TTTCCGATGTATATGGATTATTGAAAGAATTCAgttgatttaaaggtttt
aattatttctttttcttttgccatgtgtactaaaagattctacaatgttt
ggggaactcaaaatatccaaaagtttttcaatttttcatggaatatttta
tcaattatcTTGGTTTTTTCAGGGTTTATTCTAGAACTATTTTGGAGTAG
AGAGCTTTTTACAGATCTTAAAAGTGTTTACTCATTCTTTAGATATAGTC
AAAAGTTTAGACATTGGCGAAAACTTATTTCTTTGATTAAACATTGACAC
ACGCTCTTTCAAATCAGACACGCTTGCACCagacctccaaagtcattttt
aATTAACATAACAGCAAATTATACCGATAGATAGCAAATAATGTGATTAC
GCTACTCTCACCAGGTAGGCTTTCACACCTCAAAAGGAACAAATCTTTGC
GACGAGAAACACATAAATGCAATCATGTGCATTCGCACAAGCGTCCAAAC
ACAGATATAAAAAAGTCTGTTCTTCCGAGGAAAGTTGTGAGATCTGTTAT
CGACATTGGTAATTTTGACATGTCGATCAATAGCGCACACTGGAAAAAGC
GCCTCTAGAGAAAAATAAGGAAGACAAATAATGATGTAAGCAGCAAGTGT
GTGATTAAATTGTtcttcaaattatgtacttttaaaatgctttaaaaata
cataTTTGGTTGTGATTATTggatggtgaaagtttgattgataaacttgg
ttgaagtaaagcaaacttgttgtcaaagagGTTTAAACATTAAGTGGAAA
TACAGGTCAGATATTAACAATTCCATGTTttaaccaatcgtcccaagctA
GAGCCGTTAACGGTGCAGTGTCCTTcgtctgaaatattgataaaaaagtc
gATGCAATCAGTTTCGAAATAAGACGTCCAGAGTACAACCaccaaaattg
gaaataagaaaaagaagactcaacattgtgatcaaaacattcaagacgcc
cagaaaaaaaagaagactttacatTACTATCAAAACATTCAAGGGACATG
CCGACAGTCTTCAACTTTTACAGCTCCAATGCAAAGTTTCTAGCTCTGTT
ttgaaataacaaaagaaaccgGTATATTGAATCTCTGGATAgacaaaaaa
tatttgtgtgttttttatcgaatgaagactctccatagaccgccactttc
aaaacaaaacaaatacaaactttagaaaaaaatggcgacttgaagaaaaa
tggggaaaaacaaaagaatgagtGAAAAGAAAGTTCATGagttttttatc
atcctgatcagTTCTTATGACGTAGGctgcaagtagagcactgattttct
cttttaagCGTTCGCCAACTGGACAGGAGACTCTATAGCCACAAGATTCT
TGTTTTTACTTATGTGTTGTGGTGGGACTCAAAGATCAAAACAGGAGTTT
TCATATTTATTTGCGCAGGAAAGAAAGTATGATTTCATAATTACTGTTTT
TAAGatcgtgttttgaaagttttgtgtgtgtactccgtcttgaaattttt
tgatatgggaaaacagaatatgctatgtcttaaGAACAAATTACCTTAAA
GCTTTTGTTGCTttataaatatttctttttggattatgAAATTCCATCCC
TTATTGTTCTAAtgagtaaaatatttctttataagatgcttcgTTGGATT
TACTGtataatctttgtgtaaacttgtaTATGTTTTGCAACCACAGTTTT
tttgttcctgtatttttgaacTTAAACTTGAACTCCAGATGCCATGTTAT
ATTTCTCTGATCCAGTTAGATAGCTATTTTTTTACTTACCCATTCTCCTG
TCCAGTAAGACATAAGAATTTAAATTGCGTGATGGTTCTATTGAAAGTAG
AGTGTAAAATTAGGGGAGACATACTCATTTTGCCTgacatttaaattttt
gaaactttcccCTTCCTTCCACCCATTATTGCCACCTGCGAactttaatc
cccgcaaaagtttatcccgTTAAAGTAACTCTCACCCTTGtcgttgcaaa
tacatcctgtaggtgactgatgttgtttttctgAAACCCTAATTTtccaa
agagaaaaaaaaagagaaccctTTACCTAAAAGATATGggcaaaagaaaa
cttttaattagTGATAATTAGGGTAAATTCTCTTGATCTCTTTTTGCTCT
TTTACCCCATCTCATCCTGAAGAtctcaaatcaaaaaagaaaagaacaag
tTGCTGTTTGTTTGTCAATAATATCCCTTTATTGTCATTTTTGGAacaat
tagaaaaaaatggaaaaatagttGTATTTCTGGTTGCATAAGGTCCAAAT
AGTAAATTTGGAAGGTATTCTTTGTTGAATCTTTTCtgcaaattaaaaga
aattgtaTATTGGCCCAGTTTTGCGAGTTATTTATTTAGCATTAGGTGGA
ATTGAAAATACAGCATTGTATACAAGGTCTAATGCATGTATTCCCCATAT
ATTTCGTCTGAAGGTTTAGAGCCAAGTTGACTGAATATGAAGTCTTTGGT
ATTACCTCAGCAGGAATCGAACCTACTGCCTTGTCCACCGCAGCCAAATG
CTGTAGTTTTGCACTACAAGCAAACCATACCTATGGCTAACTATCCGCTC
AACattcaaatgaaaacattgggctaaaatgaaaatttcaaaatgcttTA
AGATACGAATCCTTGCCTTATTTTAGTTTGCCTTGCATTATGTACTGGTT
TGGTTTATACCACAGCACTATccaaatttttgtcattatTGCACCTTGAT
TGTTTACTTTAGGAACTTTTGCGGATTTTTGGATAGTTTAGCCGTAAGGG
AAGTATTACAGTGCTTTCATAATAAAGTGTTAACTTTCATAGTCTCCAAA
CAGCTGACTCTTCTGGTCTGTAAACTATGAATTATGCTAGCTTGCTTGAT
TGGAATGCAAAAAAAGTCAGGCTGCAGCTCTTGTTGTTATCCCCAGCAGA
GCAAACAGGGTCTTTGAAAATTTGTGAGATGACACAGTCCACTGAAACTG
GGAAGTATGGTGTTTTATGCTGTATTAATCGATAAACTTTCTTGATTGAC
TaactaaacaaaaattgatGGTAGCATACTAGGACCTTGCTGTATATCTT
AGTTGATTGGATTGCCCCAAATCTGTATCGTCCCGACCTGCATAAATATG
CTCTTTTTTGTGGCCTTCCAGACCAGTTGATCCATAAAGTAATAAAGCTT
TGATCAGATCCAGCATTCCCTTCTCTTGAACGTCCCTCTCTAAAGGAAAA
GTTTTTCAGTAAAGGCTCCTTCGAGTAAACGGGGGTGTTTAAATTTGAAA
CATACATGTAGCTGTAAAAGGTAGAGAGTAATATGGAGAAAAATGTNCCT
CCCCTCTAGGAGGGGTGTTTAAATTTGAAACATACATGTAGCTGTAAAAG
GTAGAGTAATATGGAGAAAAATGttaaagatagtatttttttcagttatc
aatCAAACTAATTGTGACCCATTTTTACATTtacaaaatgaaatatttga
acTGAAATAAAACGAAAACGCAAAGCAAGGTTCCCATTCACTTTATCAAA
GTGACCGTGGCTAAATAATATTTGATCAatgcccccttcttttaaacgtt
GGACCCCATTATAGACAGGGGGGACAACGTGATGAATTTTTGCCAAGCCT
CTTTATGCTTCATGCTATTTTACAACAAGTTTTTTGTGAGATTTTCTCTT
AATGAGTTTATAGACATAGAGAAAGTTTTATCAAAAAGGAAAGTAAttac
tttgtttttaaaaatgtctaaaagtaataattttttgttattttggaaac
ttttgattttttgaagatttgtaaaaaatgaggCCCAGCATATGTCTTTT
TACGCAATGCTTTAAAAGTTTTACCAAagttaaaatatttgtttatccTT
CCCAAATACATCAAGatgtttattatttatttatcatttgATAAACTACT
TTTGTGCTCTTCGTATACGAATATATGAATTTGCAGCAGGTGTCTAATAA
TAACCGGCTCCCCTTTTTATGTTGATTAATTCCTTCTTTTTATCTCTATT
ATTTATCGTATCGTTTATTCAAAAGCTGAGCTCGATAAATCgccatatat
ttttgaaaagtgtaGTTAGTTTTTTGATGAGCTATAATCCATAATATTGT
GTTGTTGTAGAGAAAACAAGACAAGCAGTTCTCTAAGAGGTGAATAGGAT
TGTTTTGTATACCATGGTGCTCCTCAGAAAGCTTTTTTATGTTTGCACCA
TGGGTTATTTTTATGTCGTTAGAATGAGTGATTGAGAAAAGTTTAATAAT
ACTCGTTAGCCACTCTGTTTGCTGTATAAAAGTTGTACGAGATTATTTGA
TATAACTGATTGCAGAAAGCTCTTTTGCTGACAAGAATCGCGACAAGTTT
TGAtagattttctctttttctgaTGAGTTTGTAGCTTGTGATGGAGAAAG
TTTTATCAAAGAAAAGTAATTACTTTGTATTGAATAATGACGAGGTAAGC
GGCTTATATCTTTTGTTATTGCAATCAGAATTTCCAGTGCACAAGTTACA
AAAGTTTAGCTCACTGACTTATTATCAGATCTCAACCGACCCGTACTTTC
TCTGATCATGGCgcttgaaattttgtttgaaatccTCTTAGTTTCacaaa
catctttttaaagaaaaatatgtaaTGACGAATTCCTGCGTGAACAGTTT
ACTTTCTGATTGCTTGCTCTGATAATTTCTCTTTCTGATGAAGGGAAATA
TCAACCCATGTGGACGTTGAACTTATTTGATTTCTGATACGTggtgtttt
tgttttgacaGGTTGGTGGTCATCCAATCATTNTGAAATATCAACCCATG
TGAACGTTGAacttatttgatttttgatacgtggtgtttttgttttgaca
GGTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaagaagaaat
tgtTGGCTAGCCCTGATGATGACTTGGTGAGTAAACTTCATGTTCGTGTT
CGTAGCAGTTCGTGGTCATTGCTGAATACGAATTTCATCAATTTGTATCA
TAAGTCACAGATAAATTCTCAGAACTAGTTTTCCCTCATTTTTAAAAGTG
ACTTCCCTTTTATGGTCATTAAAAGAGGCTAGAGGATGCATTGTACAAAT
CTTATGCGAGTTATGCGAGTTGTAGTCGTGGCGTTCTAAGTCATAGATTT
AGAACGCTATGGTTgtagtttttattttaaaacctgAATAAAACCTTGCT
TGTCATCCTTTCTTCGTCAGGGTTACAAGAACAAAGGGATCATATCCAAC
GATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATTAAAGAGCAAGG
TGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCAACGAAGTTTGA
ACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAGATATTCAAATA
CTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGATGAGCAAATTGA
TAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCAAGCTTCCTTGA
TTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATAAAATGGACTCC
AAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCTATCGTCAAACA
TAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAATAATTCTGAGG
ACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTATCGAGAACCATC
GGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCCTTCACCAAAAA
GCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAGTAGATCAGAAC
CTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGTGGGCTTACTTA
AATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTGTATGTCCGAAT
TATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCATCAAACCGTGTT
ATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATAAGCGATTAGAT
CTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGTATTTCGCGACC
TCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGATTTTATTGTTC
ACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATTCTTTGTTCATC
AAATGTATCGTTGAAATTTAATTGCTGCTGGTCTGATTCTCATAATTTTT
TAGACATGAAACTCTGCTATTTGTTGTCGATGGGATTCATAGAATTCTAC
ATCGATGTATTTTATACTCATAATTTATTATTCtccattttcaaaatgat
cttGATACGATTGTGCTAATTTTTCGAGAGGTATTTTTTAGAAAGAATGT
TTTAATTAAAATGTATCAATACATTTTCACTATCCTACTCTGTATACAGC
TACCACAAAAAAATCCCGTCTTAGAATTCCCCAACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014472-exon-sc0000188-1491911889:28221..28248 | TCONS_00014472-exon-sc0000188-1491911889:28221..28248 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1510915933:28221..28248 | TCONS_00014472-exon-sc0000188-1510915933:28221..28248 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1575043694:28221..28248 | TCONS_00014472-exon-sc0000188-1575043694:28221..28248 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1491911889:35422..35496 | TCONS_00014472-exon-sc0000188-1491911889:35422..35496 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1510915933:35422..35496 | TCONS_00014472-exon-sc0000188-1510915933:35422..35496 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1575043694:35422..35496 | TCONS_00014472-exon-sc0000188-1575043694:35422..35496 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1491911889:35791..37008 | TCONS_00014472-exon-sc0000188-1491911889:35791..37008 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1510915933:35791..37008 | TCONS_00014472-exon-sc0000188-1510915933:35791..37008 | Clytia hemisphaerica | exon |
| TCONS_00014472-exon-sc0000188-1575043694:35791..37008 | TCONS_00014472-exon-sc0000188-1575043694:35791..37008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188 | supercontig | sc0000188:28221..37008 + |
Blast
BLAST of TCONS_00014472 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.427e-16 Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 2
Query: 605 VWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMWAYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNKRLDLVRVRDLS-----------VKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDSLFIKCIVEI 1051
+W+I ++ ++L+ ++ + S F T GY+L + A+LNG G G L++Y+R++ G +D +L WP TF L+ Q+ DP L + + ++ + G R D+ S+ G+ FI H+D+ K+ Y+ DD++FI+ VE+
Sbjct: 311 IWKIGSYGRRLQEAKAKPNLE-CFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQS-DPG----LAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVEL 464
The following BLAST results are available for this feature:
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