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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=transcript|length=1191bp ATTTTTGTGACTTTGTCAGGCCTTTAATTACCCAATTACCATATTAACGA TGTTCAAATTATCATTtgtctttatatttttgtttgttttattgtttgtt CAATTAATAATCTCTTACACTTTTGTTTGATTCTGTTTAGAAAAACCATG AACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACTAAA AACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGTACG TGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACTGCT ATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGAGTAA ATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGTTTAC GAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCATGATG TTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATAATCA ACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGGATCA cagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTATTGTT TCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTTAAAT GTGACGTACTTACAATAAACTATTTGGACCAATTTTTCAACCCTAGAAAA AGTAAAGAGCATGGAGCGTGTTATGACTTCCCTTCATCTTATATGATTTA CTGAGTTCTAAATATTTTCTCTGCTATATTTTTGATATGTGAAAATCAGT ACGTTAAATAAACTCacttaaatttgatgaaaaggTTTGTGAATGAATTC ACATTTTCGGAGTATCTTAAGAATCTTTGTGCTCGAAAACAAAGATAGTT TATCACATTGTAAATGACAACTGTTTCCTTTGAATGGTTTTCGAATTAAA ACAATTGGCTGTCTTATCCTTAGGTAGGCTCTTTAAAAAGACAGCCTTTA GAATACTAttagattattttttatttttgagaaaaatttgtttggtttgt taatttttagtacatatttaaataaataaattatattgaaattttaaagt AACTAAACTGCCCTCTTTGAGTCGACGGTCTATTTAGCTTAATTGTTCTA TACATCTAATAAAcacttttttacaagaataatttcacaaa Run BLAST on NCBI protein sequence of TCONS_00014471-protein >TCONS_00014471-protein ID=TCONS_00014471-protein|Name=TCONS_00014471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MNKINMNIDLVTTGHLLKTTATIFSGVFVGGALYVTLVEQPARMTHDPTT AIIQWKPSFVRAASLQSKLSLLSSASAFGAYFCLRNTSADALNWLGCGCM MLSMLPFTLIFIRPLNNQLIETEKCISVKGEGWITENLKHWGKLHSVRAI VSLGAFSFMIYTLNKR Run BLAST on NCBI transcript from alignment at sc0000188:19888..22132+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at sc0000188:19888..22132+ (Clytia hemisphaerica) ATTTTTGTGACTTTGTCAGGCCTTTAATTACCCAATTACCATATTAACGA
TGTTCAAATTATCATTtgtctttatatttttgtttgttttattgtttgtt
CAATTAATAATCTCTTACACTTTTGTTTGATTCTGTTTAGAAAAACCATG
AACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACTAAA
AACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGTACG
TGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACTGCT
ATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGGTATA
TTTTTCGTCTTATCTGATCCTGTCTGATTGTATTGAATTGGATCCTACTC
ATTTTACATTGCAggaaaaactctcaaaaaaGGTGATAAATGTGAAACTT
GTTTAGACTAGGTGAAGAAatagttttcttcatttcagATTAGCTGGTTC
CAGTGGAACCATTATTAATACAAATataatctgaaagaattttcatttga
ctttcgttatatgttttttttcataCAGAGTAAATTATCATTGCTGTCGA
GTGCGTCGGCTTTTGGAGCTTATTTTTGTTTACGAAACACTTCAGCAGAC
GCATTGAACTGGCTTGGATGTGGGTGCATGATGTTGTCCATGCTGCCCTT
CACACTCATCTTCATCAGACCTCTCAATAATCAACTCATCGAAACTGAAA
AATGCATCAGTGTCAAAGGTAAGATTAAATGGGTCTTTTTGGATCAAATT
TGGCACACAggatccttgtcacataaggtaacttttgacaaaaaatattt
ttgatgacgtcactcatcatgcccaatgTGAGCagaaaccgaaaatttcc
ttcgatcttataaatagctattgtattctaacaaaggctctAAGAAAGTT
GCCTGagtctaaaatgcttattttatcctaaatattcaataaattaggGT
TTAAACTAAATATTTGACATAAagaataaatttgtattggaacagtgtca
atttttgtgacaccttactgtcagaaatgtcatcatgctcaaggtgtgaa
aatttttaggtgtcaaattttttttgaagctaataaaagttaggaattta
cagaaaatttcatggtaaaagctctattatttcagaagCTATTACCATTA
AtgtgacctccgaacagaaaaagccccctagtacgaatagggttaactcG
AAAAAATTCGTTGGAACAATATTTTTGGTTCCTCGAGAACATAAAAATTA
GGGTATTCAatgtctccataattcgaactctCCATAACTATATTgaacta
tttttttctttcaacttaGCGTGAGAGTTAATTTAAACTTGACTGAGTAA
ACTTGAAAACCTCTGCAACTCGAATGTTTCCTTATCTCGAACggtaaggg
gggggggtaaactgTTCGTGTAAAGGAGACATTCGATTCGCAGAGGTTTT
CAAGTTTAAAGTACAAAAAAATAAgtgaaataatttacaaagAGTATCGA
TGATTTCATATTTCTCTtctttcattttatcttttctaGGTGAAGGTTGG
ATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTAT
TGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTT
AAATGTGACGTACTTACAATAAACTATTTGGACCAATTTTTCAACCCTAG
AAAAAGTAAAGAGCATGGAGCGTGTTATGACTTCCCTTCATCTTATATGA
TTTACTGAGTTCTAAATATTTTCTCTGCTATATTTTTGATATGTGAAAAT
CAGTACGTTAAATAAACTCacttaaatttgatgaaaaggTTTGTGAATGA
ATTCACATTTTCGGAGTATCTTAAGAATCTTTGTGCTCGAAAACAAAGAT
AGTTTATCACATTGTAAATGACAACTGTTTCCTTTGAATGGTTTTCGAAT
TAAAACAATTGGCTGTCTTATCCTTAGGTAGGCTCTTTAAAAAGACAGCC
TTTAGAATACTAttagattattttttatttttgagaaaaatttgtttggt
ttgttaatttttagtacatatttaaataaataaattatattgaaatttta
aagtAACTAAACTGCCCTCTTTGAGTCGACGGTCTATTTAGCTTAATTGT
TCTATACATCTAATAAAcacttttttacaagaataatttcacaaa Coding sequence (CDS) from alignment at sc0000188:19888..22132+ >TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0000188:19888..22132+ (Clytia hemisphaerica) ATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACT AAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGT ACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACT GCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGAG TAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGTT TACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCATG ATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATAA TCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGGA TCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTATT GTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTTA AATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTAC TAAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTG TACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCAC TGCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGA GTAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGT TTACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCAT GATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATA ATCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGG ATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTAT TGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTT AAATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTA CTAAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTT GTACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCA CTGCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAG AGTAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTG TTTACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCA TGATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAAT AATCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTG GATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTA TTGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGT TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00014471-exon-sc0000188-1491911889:19888..20232 | TCONS_00014471-exon-sc0000188-1491911889:19888..20232 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1510915933:19888..20232 | TCONS_00014471-exon-sc0000188-1510915933:19888..20232 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1575043694:19888..20232 | TCONS_00014471-exon-sc0000188-1575043694:19888..20232 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1491911889:20466..20655 | TCONS_00014471-exon-sc0000188-1491911889:20466..20655 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1510915933:20466..20655 | TCONS_00014471-exon-sc0000188-1510915933:20466..20655 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1575043694:20466..20655 | TCONS_00014471-exon-sc0000188-1575043694:20466..20655 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1491911889:21477..22132 | TCONS_00014471-exon-sc0000188-1491911889:21477..22132 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1510915933:21477..22132 | TCONS_00014471-exon-sc0000188-1510915933:21477..22132 | Clytia hemisphaerica | exon |
TCONS_00014471-exon-sc0000188-1575043694:21477..22132 | TCONS_00014471-exon-sc0000188-1575043694:21477..22132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000188 | supercontig | sc0000188:19888..22132 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013901 | Anthrone_oxy |
Blast
The following BLAST results are available for this feature:
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