TCONS_00014471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014471
Unique NameTCONS_00014471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=transcript|length=1191bp
ATTTTTGTGACTTTGTCAGGCCTTTAATTACCCAATTACCATATTAACGA
TGTTCAAATTATCATTtgtctttatatttttgtttgttttattgtttgtt
CAATTAATAATCTCTTACACTTTTGTTTGATTCTGTTTAGAAAAACCATG
AACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACTAAA
AACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGTACG
TGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACTGCT
ATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGAGTAA
ATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGTTTAC
GAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCATGATG
TTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATAATCA
ACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGGATCA
cagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTATTGTT
TCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTTAAAT
GTGACGTACTTACAATAAACTATTTGGACCAATTTTTCAACCCTAGAAAA
AGTAAAGAGCATGGAGCGTGTTATGACTTCCCTTCATCTTATATGATTTA
CTGAGTTCTAAATATTTTCTCTGCTATATTTTTGATATGTGAAAATCAGT
ACGTTAAATAAACTCacttaaatttgatgaaaaggTTTGTGAATGAATTC
ACATTTTCGGAGTATCTTAAGAATCTTTGTGCTCGAAAACAAAGATAGTT
TATCACATTGTAAATGACAACTGTTTCCTTTGAATGGTTTTCGAATTAAA
ACAATTGGCTGTCTTATCCTTAGGTAGGCTCTTTAAAAAGACAGCCTTTA
GAATACTAttagattattttttatttttgagaaaaatttgtttggtttgt
taatttttagtacatatttaaataaataaattatattgaaattttaaagt
AACTAAACTGCCCTCTTTGAGTCGACGGTCTATTTAGCTTAATTGTTCTA
TACATCTAATAAAcacttttttacaagaataatttcacaaa
Run BLAST on NCBI

protein sequence of TCONS_00014471-protein

>TCONS_00014471-protein ID=TCONS_00014471-protein|Name=TCONS_00014471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MNKINMNIDLVTTGHLLKTTATIFSGVFVGGALYVTLVEQPARMTHDPTT
AIIQWKPSFVRAASLQSKLSLLSSASAFGAYFCLRNTSADALNWLGCGCM
MLSMLPFTLIFIRPLNNQLIETEKCISVKGEGWITENLKHWGKLHSVRAI
VSLGAFSFMIYTLNKR
Run BLAST on NCBI

transcript from alignment at sc0000188:19888..22132+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at sc0000188:19888..22132+ (Clytia hemisphaerica)
ATTTTTGTGACTTTGTCAGGCCTTTAATTACCCAATTACCATATTAACGA TGTTCAAATTATCATTtgtctttatatttttgtttgttttattgtttgtt CAATTAATAATCTCTTACACTTTTGTTTGATTCTGTTTAGAAAAACCATG AACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACTAAA AACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGTACG TGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACTGCT ATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGGTATA TTTTTCGTCTTATCTGATCCTGTCTGATTGTATTGAATTGGATCCTACTC ATTTTACATTGCAggaaaaactctcaaaaaaGGTGATAAATGTGAAACTT GTTTAGACTAGGTGAAGAAatagttttcttcatttcagATTAGCTGGTTC CAGTGGAACCATTATTAATACAAATataatctgaaagaattttcatttga ctttcgttatatgttttttttcataCAGAGTAAATTATCATTGCTGTCGA GTGCGTCGGCTTTTGGAGCTTATTTTTGTTTACGAAACACTTCAGCAGAC GCATTGAACTGGCTTGGATGTGGGTGCATGATGTTGTCCATGCTGCCCTT CACACTCATCTTCATCAGACCTCTCAATAATCAACTCATCGAAACTGAAA AATGCATCAGTGTCAAAGGTAAGATTAAATGGGTCTTTTTGGATCAAATT TGGCACACAggatccttgtcacataaggtaacttttgacaaaaaatattt ttgatgacgtcactcatcatgcccaatgTGAGCagaaaccgaaaatttcc ttcgatcttataaatagctattgtattctaacaaaggctctAAGAAAGTT GCCTGagtctaaaatgcttattttatcctaaatattcaataaattaggGT TTAAACTAAATATTTGACATAAagaataaatttgtattggaacagtgtca atttttgtgacaccttactgtcagaaatgtcatcatgctcaaggtgtgaa aatttttaggtgtcaaattttttttgaagctaataaaagttaggaattta cagaaaatttcatggtaaaagctctattatttcagaagCTATTACCATTA AtgtgacctccgaacagaaaaagccccctagtacgaatagggttaactcG AAAAAATTCGTTGGAACAATATTTTTGGTTCCTCGAGAACATAAAAATTA GGGTATTCAatgtctccataattcgaactctCCATAACTATATTgaacta tttttttctttcaacttaGCGTGAGAGTTAATTTAAACTTGACTGAGTAA ACTTGAAAACCTCTGCAACTCGAATGTTTCCTTATCTCGAACggtaaggg gggggggtaaactgTTCGTGTAAAGGAGACATTCGATTCGCAGAGGTTTT CAAGTTTAAAGTACAAAAAAATAAgtgaaataatttacaaagAGTATCGA TGATTTCATATTTCTCTtctttcattttatcttttctaGGTGAAGGTTGG ATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTAT TGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTT AAATGTGACGTACTTACAATAAACTATTTGGACCAATTTTTCAACCCTAG AAAAAGTAAAGAGCATGGAGCGTGTTATGACTTCCCTTCATCTTATATGA TTTACTGAGTTCTAAATATTTTCTCTGCTATATTTTTGATATGTGAAAAT CAGTACGTTAAATAAACTCacttaaatttgatgaaaaggTTTGTGAATGA ATTCACATTTTCGGAGTATCTTAAGAATCTTTGTGCTCGAAAACAAAGAT AGTTTATCACATTGTAAATGACAACTGTTTCCTTTGAATGGTTTTCGAAT TAAAACAATTGGCTGTCTTATCCTTAGGTAGGCTCTTTAAAAAGACAGCC TTTAGAATACTAttagattattttttatttttgagaaaaatttgtttggt ttgttaatttttagtacatatttaaataaataaattatattgaaatttta aagtAACTAAACTGCCCTCTTTGAGTCGACGGTCTATTTAGCTTAATTGT TCTATACATCTAATAAAcacttttttacaagaataatttcacaaa

Coding sequence (CDS) from alignment at sc0000188:19888..22132+

>TCONS_00014471 ID=TCONS_00014471|Name=TCONS_00014471|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0000188:19888..22132+ (Clytia hemisphaerica)
ATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTACT
AAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTGT
ACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCACT
GCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGAG
TAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGTT
TACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCATG
ATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATAA
TCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGGA
TCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTATT
GTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTTA
AATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTAC
TAAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTTG
TACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCAC
TGCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAGA
GTAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTGT
TTACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCAT
GATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAATA
ATCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTGG
ATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTAT
TGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGTT
AAATGAACAAAATAAACATGAATATAGACTTAGTAACAACTGGTCATTTA
CTAAAAACAACAGCCACTATATTTTCCGGTGTGTTTGTTGGTGGGGCGTT
GTACGTGACGTTGGTGGAACAACCTGCCCGTATGACACACGATCCAACCA
CTGCTATCATTCAGTGGAAACCTTCTTTTGTGAGAGCTGCTTCACTTCAG
AGTAAATTATCATTGCTGTCGAGTGCGTCGGCTTTTGGAGCTTATTTTTG
TTTACGAAACACTTCAGCAGACGCATTGAACTGGCTTGGATGTGGGTGCA
TGATGTTGTCCATGCTGCCCTTCACACTCATCTTCATCAGACCTCTCAAT
AATCAACTCATCGAAACTGAAAAATGCATCAGTGTCAAAGGTGAAGGTTG
GATCAcagaaaatttgaaacattGGGGAAAATTACATTCAGTTAGAGCTA
TTGTTTCATTGGGTGCATTTTCTTTTATGATCTACACCCTAAATAAACGT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008097XLOC_008097Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014471-proteinTCONS_00014471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014471-exon-sc0000188-1491911889:19888..20232TCONS_00014471-exon-sc0000188-1491911889:19888..20232Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1510915933:19888..20232TCONS_00014471-exon-sc0000188-1510915933:19888..20232Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1575043694:19888..20232TCONS_00014471-exon-sc0000188-1575043694:19888..20232Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1491911889:20466..20655TCONS_00014471-exon-sc0000188-1491911889:20466..20655Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1510915933:20466..20655TCONS_00014471-exon-sc0000188-1510915933:20466..20655Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1575043694:20466..20655TCONS_00014471-exon-sc0000188-1575043694:20466..20655Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1491911889:21477..22132TCONS_00014471-exon-sc0000188-1491911889:21477..22132Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1510915933:21477..22132TCONS_00014471-exon-sc0000188-1510915933:21477..22132Clytia hemisphaericaexon
TCONS_00014471-exon-sc0000188-1575043694:21477..22132TCONS_00014471-exon-sc0000188-1575043694:21477..22132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:19888..22132 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.5948 91.7051 177.164 196.939 28.9888 17.3634 23.1777 24.7426 22.8638 19.3831 18.2647 15.1825 12.5184 12.1022 16.4118 15.7851 46.9197 43.9214 11.099 14.9097 41.3928 37.5176 61.0585 57.6201 44.4135 43.8614 57.4649 40.7092 51.9687 47.6776
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013901Anthrone_oxy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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