TCONS_00014462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014462
Unique NameTCONS_00014462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014462 ID=TCONS_00014462|Name=TCONS_00014462|organism=Clytia hemisphaerica|type=transcript|length=869bp
GGGAATAAAAATCCTCGGCTTCAAGCCAAAGGACCGTAGCTTTTGACTGC
AGCAAAAACTCTACCAATAAAATTTGTCACCGCGAAGGAGTGTTTTTGTA
AACACAGCTCAAAAACAGAGGCGGGAAGAGTAGGAACTGATGTTTTGCTA
CATTTCGaacgaaaacattcgaaattatgTGACTTTAGAAACATTCTAAA
ACGTACCAAGAGAGTTCGAAATGTTGCAGAATgttgtgtttttatttatt
ttgtgctttgaactttgaagagtcactcttcaaaaaatttttggaatggC
TAGTCACTAAGTCTAGAATTATCCAGAAATTAATAGATACGAATTTATAA
AGGGAAAGGGCAGAAAGATGACTACAAGAAACTTTCTCTGGAGCACTGCT
TATGTTGGATTATTTTTGTTACATAAAGACTTTAATTTTGGTAAAATGGG
CAAAGATTGACGAATGNNACTATTTTTTCATTTCGAAAGATTTGAGTAAC
ATTGTTTTTAATCACTTAACAGATCGTTTCTATCGTggacatttctattt
ctattcagACAGTGGACATACAGAATGCATCGAAGTGTATTTCATAATGA
GAAATGTTAACAAAGAGAATATATGTTACGTGGTGTGGTGGCAAGCACAA
TTCGAGAGGTCCACcaaataattttgatgaaatcatgAGGAAATGTGGCT
GATGGTCTACAGCtggattattttatttataatttttaacaGAATAATCC
TCGAGATCGGAGAACTTTAAAAGATaccttttctttccttttgtgGATTC
TACCGGAGACCGCTATGAGTAtagaaataattatttgaaagtttcgaaat
aatcaaaacatgTTTCAGC
Run BLAST on NCBI

transcript from alignment at sc0000187:297850..298718

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014462 ID=TCONS_00014462|Name=TCONS_00014462|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at sc0000187:297850..298718 (Clytia hemisphaerica)
GCTGAAAcatgttttgattatttcgaaactttcaaataattatttctaTA
CTCATAGCGGTCTCCGGTAGAATCcacaaaaggaaagaaaaggtATCTTT
TAAAGTTCTCCGATCTCGAGGATTATTCtgttaaaaattataaataaaat
aatccaGCTGTAGACCATCAGCCACATTTCCTcatgatttcatcaaaatt
atttgGTGGACCTCTCGAATTGTGCTTGCCACCACACCACGTAACATATA
TTCTCTTTGTTAACATTTCTCATTATGAAATACACTTCGATGCATTCTGT
ATGTCCACTGTctgaatagaaatagaaatgtccACGATAGAAACGATCTG
TTAAGTGATTAAAAACAATGTTACTCAAATCTTTCGAAATGAAAAAATAG
TNNCATTCGTCAATCTTTGCCCATTTTACCAAAATTAAAGTCTTTATGTA
ACAAAAATAATCCAACATAAGCAGTGCTCCAGAGAAAGTTTCTTGTAGTC
ATCTTTCTGCCCTTTCCCTTTATAAATTCGTATCTATTAATTTCTGGATA
ATTCTAGACTTAGTGACTAGccattccaaaaattttttgaagagtgactc
ttcaaagttcaaagcacaaaataaataaaaacacaacATTCTGCAACATT
TCGAACTCTCTTGGTACGTTTTAGAATGTTTCTAAAGTCAcataatttcg
aatgttttcgttCGAAATGTAGCAAAACATCAGTTCCTACTCTTCCCGCC
TCTGTTTTTGAGCTGTGTTTACAAAAACACTCCTTCGCGGTGACAAATTT
TATTGGTAGAGTTTTTGCTGCAGTCAAAAGCTACGGTCCTTTGGCTTGAA
GCCGAGGATTTTTATTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008088XLOC_008088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014462-exon-sc0000187-1491911889:297850..298718TCONS_00014462-exon-sc0000187-1491911889:297850..298718Clytia hemisphaericaexon
TCONS_00014462-exon-sc0000187-1510915933:297850..298718TCONS_00014462-exon-sc0000187-1510915933:297850..298718Clytia hemisphaericaexon
TCONS_00014462-exon-sc0000187-1575043694:297850..298718TCONS_00014462-exon-sc0000187-1575043694:297850..298718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:297850..298718 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.38247	0.645724	0.826653	1.57227	3.47234	1.32564	2.17657	3.57866	0.870278	0.938717	1.39387	1.08356	0.776879	0.463233	0.581372	0.850769	0.821287	0.915626	1.12426	1.03816	1.91778	1.1869	0.383394	0.485367	3.08921	3.87025	1.54654	1.29379	0.363292	0.306408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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