TCONS_00014451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014451
Unique NameTCONS_00014451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014451 ID=TCONS_00014451|Name=TCONS_00014451|organism=Clytia hemisphaerica|type=transcript|length=267bp
NCTCAATCTCGCTGTCTCAGTCCACAGTGggattgaattgtatgcaaagt
tTTATGACTAcgcaaatgaaaataatataatacacATCCTGAATTCAAAA
CTAAGGGTGGAGAATTCATACCttgattgactgattgactgcAATAATCT
TGAGGACTCTCATATTGTTtgtatatgtaatttttttatgaacttcAGAA
TTCAgttctataaaaacatccatTATTGGCATTAATTTTCAAGCCAGCAC
ATAAATAATGTCTTCNN
Run BLAST on NCBI

transcript from alignment at sc0000187:122759..123025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014451 ID=TCONS_00014451|Name=TCONS_00014451|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0000187:122759..123025 (Clytia hemisphaerica)
NNGAAGACATTATTTATGTGCTGGCTTGAAAATTAATGCCAATAatggat
gtttttatagaacTGAATTCTgaagttcataaaaaaattacatatacaAA
CAATATGAGAGTCCTCAAGATTATTgcagtcaatcagtcaatcaaGGTAT
GAATTCTCCACCCTTAGTTTTGAATTCAGGATgtgtattatattattttc
atttgcgTAGTCATAAaactttgcatacaattcaatccCACTGTGGACTG
AGACAGCGAGATTGAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008077XLOC_008077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014451-exon-sc0000187-1491911889:122759..123025TCONS_00014451-exon-sc0000187-1491911889:122759..123025Clytia hemisphaericaexon
TCONS_00014451-exon-sc0000187-1510915933:122759..123025TCONS_00014451-exon-sc0000187-1510915933:122759..123025Clytia hemisphaericaexon
TCONS_00014451-exon-sc0000187-1575043694:122759..123025TCONS_00014451-exon-sc0000187-1575043694:122759..123025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:122759..123025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.55373	2.07645	3.86271	3.0844	13.6647	2.98397	1.77953	4.28497	10.7055	12.4298	10.6431	8.0502	16.248	13.0628	4.3222	7.71717	7.65774	8.15679	14.6098	27.1818	18.7399	12.0519	21.5875	26.9187	3.36085	0.136996	40.7246	18.7422	25.9456	22.4064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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