TCONS_00014437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014437
Unique NameTCONS_00014437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014437 ID=TCONS_00014437|Name=TCONS_00014437|organism=Clytia hemisphaerica|type=transcript|length=558bp
GCCGGCAGGACGAATGCCTTAGGGTTAGATTtcgaatttttatcttttgG
CATTCATTAATCATGGATTTGGTCTTTGACTAAAAGAGGAACTTGTTTGA
TTCAACAACGAATTAACTAAGATGCACATTATCAACAACTTGAAGATTTT
CATACTAGATGAATCTTCGTGTGGAATAAAGAGTCAACACTTGAGGATct
aaatggagaaaataaacaCGAAAAAGTTAAGGgtcaACAAACCTTTGGAC
tagtccgaaaaaaattgacacaaacTGTTTGGCCAACAAGAAAAATGACC
AGTTTGAAGTCTGAAAAAGATATTGAGCAACTTTGGTAACTGGACAATGT
TTCCTTTCAAATGGTACAAAATCTGTGCCAGGTTGTCTACATCTCCGTCC
GAAAGTTCACTAAACGACTGTCCAGATTTCGAATGATTTGTGATAGCAGA
GTACGAATACCTCCATGTTATGGCGGCCGATTGGAATGCCATTGTTGGAA
AAAGCAATGTTTCAGATTTTCGAGcgtttgaatttcaaaacattcgaatg
acGCTGTT
Run BLAST on NCBI

transcript from alignment at sc0000187:281230..287985-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014437 ID=TCONS_00014437|Name=TCONS_00014437|organism=Clytia hemisphaerica|type=transcript|length=6756bp|location=Sequence derived from alignment at sc0000187:281230..287985- (Clytia hemisphaerica)
GCCGGCAGGACGAATGCCTTAGGGTTAGATTTCGAATTTTTATCTTTTGG
CATTCATTAATCATGGATTTGGTCTTTGACTAAAAGAGGAACTTGTTTGA
TTCAACAACGAATTAACTAAGATGCACATTATCAACAACTTGAAGATTTT
CATACTAGTAGGTTAAAATCATTCATCACAAAAAAGTTTTTAATCTGAGA
CGGAATTAATGCATTTTACAAAGCAAATTAGCATTTAGTCTTGAAATTTT
GATATATTGTCCAGCATTTTGAGACGGAAAGGCCTTTATATATACTTTAC
CGGGACGGAAAGCTGTCCCAGATAGGAAAACTTTAAAACTGTAAAATATT
GAGGAACGACGTACATATTTCTCAGTCACATTTCACTCGCTAGTTTACTA
TTTTTTACAGTGCAAAGCCCTATATAACATTACTAACCTATGATGTTCAA
GGATGCCCGTACACTATGGTTCAAATTGAAATTCATAGTAGCATCAAAGG
GGATTTTCCATTCCTGTTTTCGTATATGTATCATCTTCGTTTGACCACGA
AATTGGTGAAAATTAAAATTGGCTTTTCTTTGATCCTTGGTCATTCGTAC
TATGAAAGATCTTTTTTCGTTCTTTTTTAGGATGAATCTTCGTGTGGAAT
AAAGAGTCAACACTTGAGGATCTAAATGGAGAAAATAAACACGAAAAAGT
TAAGGGTATGTGTAACGGAACATCTAGAAATCTTTATACACCTTTTCAAC
CGTAGCCGCAAATTGCCGCACAGGCATTTTTTTTGTCCGTTTTACCAACC
TAAAACCGTCCAAGTCTTTTTTTATCGCGCCGGAAAGACAATAGAAAAAA
GTGTAAAAAAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATGATACA
GTGGCGCGCACCTGACCACACGACTACTGTCGGAAAGGTGTATTGCTAAC
AAATTTTTTAATGCTGTGATCAAATTCCAATGTTGCACTCTATGAATTAA
TCTTCTTCATCCTTAACTTTAAATACAATTTTCCCGCACGGACATTAGAA
GGAAATGGAGACCTAAAAATTGTTTAATCATTATCATGCCAGCATAAAAG
AATAAATCGGAAAATAAAATAGATAACTAAAATAGGATTTATGAAATGCC
GCTTAAAGGGTATACGATCCTATCGTCTACACAAGGTCACTAAAAAGGGA
ATGATTTAGGAGGTGGGATGAATATGAAATCGTCAAAAACTAAAAAACTC
TTACCATTACAAAAACCATCTATAAATGCATCCGAATCCATATGATACAG
TTTACTTTGTATGCCTTCGAAAAGAGATTGATGCAGCCATCGGTTATGTC
TGTAGTACACACCATAGGTGCTTATTCCCCCTCTAAGTTCAGCATCAAGC
CATACATCGTGCAGATATTGATCGAAAATTTGATCCGTGATTTGCTCCGT
GACAAGAAGGATGGCGTGTTGAACGTGATGTTGATCGTATAGGTTCAGTT
GTTTCGCTGATGCTCGTATTAGGGAGGTAATACTGATAATATGTGCATTG
GAGCTTTCTCGGATCAAGAATTGCGCGATGTTATCTCCCTTATTATATTC
GTTTGAGAAGCTGTGAAAAAAGTTTGGAAATGTGATGTTATGGAGAGATA
TTTGAAGACGTAGGCAATGCTTTTCTATGCTAAGAAGGAAGATAGTGCCT
TTTATTATTCGCGTAGGAAGGCTTTTCTCAAAATTCTCTAAAACATACGG
AAGCTTTAGCCATAATTGCTTAAATAGCTTAAACAAAGGTCCAACTTTTC
AAAGATAATGTCTCATTCCTTGCCGATTCTTTTTGGGAGGGGATGGACTA
TTGAAGTGCAAATTTCTTGTTCCACGAAATCGGGAACGTATGGTTCCGAC
CGTGGGAACACAAATTTGTTTGAGTTAAGCAAATTTCCAGTTATGGAGTA
AGGTTTATAAGGCATTGTTAACTGAATGGACCATAAAACTTGTCCTAGTT
ATAAGGAGACATTCGAGTTATAGAGGTTCGAGTCAAAGAAACTCCACTGT
AACTATCTTTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTGTCACTTTTCTAGCGGAAACAGACCAGTACCTCGGGT
AATTGAAAAATAAGCTTTGGAAAATTAGGCAGTTTTGTATGGGTAAGCAC
AAGATTTCCCGTACCTCTAGAGACAAACCCTTTCCAATCTCATGCCGGTA
AGCCCGGGAAAAATAGCGGAAAGATTTCGGAAAACTGACAAGAATCTTAG
TGCAAAAATGGGAATCTTATACAAAAACGACGGTATTTGAAAATCTTGTT
CGCACCTTCACATGCAATTCTTGGGATGATGCCTTTTGGTTTACAAAGGA
CAGGATCCATCCTTACCATACCCCTACACAGAGGTTCGTACATGCATTCA
GAGTACAATCCTATTTGCGGGATATCCATTACAGGTGACGGGTTCCTGGT
ATTCAAAACCTGAAAATAAAGACCAATTCATTTCATAGTATGAAATAGAC
TCACATTTTTCGAATCATAGTTTTACAGTAGACTCTCGCTTATTCGAACT
TCGATTATTCGAATCTTTCTATAATCCAAGCCCCCCCCCTCAAGGAGAAA
ACCTCTTAATATATTTACTATACTTTGAATGTCTCTGTAATTCGAACAAA
AAAGATTCTCCGTTCAAGTTCGAATTAGGGAGAATCAACTGTAGGTTTAT
TTAGTATATCTGACATTTTATGGTCATTTGACTACTCTTAGGGAGTGTGC
AAGGGCTACAAGGGAGTATTTTTTTAGAATTATACCAGACTGTGCACCTG
GAAGGGTCAAAATTATGTCTGTCACGATTCTTGTTGATATTGCTGATATT
GGGGTCCTTCTTTTCCAGTGACATGGCGCTTTAAGTTGTCAAGGTCTCGG
TGTAGGTTCCAAATATATTAAATACGGAGATGGATGTATGAGGAGATATT
ATTTTTATCATTGATGGTTCGTACTCTCCCTTATTCGAACCTCTGTAATT
CGAATCTTTCTGTAATTCGAGCGAAAAGATTGATTCCCTCAGCTTGAAAG
AAACGTAAGATTTTACAATTTTATTCCCTCGAAGATCAATTTTAAGAGAG
GCGACTGTATTTTTGCTTTTAGGTACCTTGGACTAATTAGGGTTTTAATC
TCTAACAGTAAGTAAAAACAACACCTTTTTACTTTAAAGGCGGTTACAAT
TTTTTTTGCACTTCGTGTCAGGAGATATGGAATCGTGCTTAAATCGATGT
TGTTACTCATGGGGCAACATGCCAACGCAAAAAGCAACTAGCAACACATA
CACGTATTTTTTTATATAAGAAAATCCAAATTTTTTTAATGCCTTTAGAT
ATTCTTAAATTTTCGAGTTCTAAGCCTAAAATTCTTATTTTCGTTCATTT
CTCTAAGGAATCGGGTGTTTTAAAGCCCACAAAGCCTTAAGATATTCTTA
ACTTGTTCTTAATATTCTTGTCATCCAAACCTTTTGTTCTTATATAGCTT
GTTCTTATAAAAAACCGTGTAGCGACACATACTTCGTCATTATCGTGCAG
TCAAATTTTAGAAAGAAGCACGAGAAAATTCTTCCTATTAACAAGTCTAT
TTAAAGAAATTTTGAGAAAAAGCCCTACATCACAAAATTACATAACACTC
ACATAATACTTTCCAAAATTATAGTTTTTTTCTAGAAAGGTGTTTACCTC
ATAATGAAGGGCGGGTGACCCTTGAGTGCACGATTTAGCCTTTCATCTTA
AAAGATAACAAATTTCTTGTGCACGCTTTTAGGTTTATGGCTAGAAAATC
TTGAACAGTTAATGAGAGCACGATTTTAGCATTTCGTCCTAAAAATAACA
AACGTAGCCTTAAAGCTATAATGGCTTAATTGTTTCGAGCCTAAAAAGAC
TTCCGCTTTTTCCAAGCAAATACAGAAAGGTACAATTACATAAACGTCAT
CATCCTCAAACAAAGGATTTAAAATATTACTTTTTTTAGTCAAGACATTT
TATTCCCCCATAAGAAGGCAATTGCCAATTCACAAGCATGTCTTGGATGT
CCAGCCAACACCAAGGAACTTTGATAAAAGCAATTTTATTTCGAATTTTT
GGTCTGGCAGTCAATATCTAATTGACTGTATAAACGTTCAACTTCGTTCA
AGTTGGGAGTTAGGATGCTTGCACCTGCACACATGTGAGTTTTGTTTTTG
CGTCATTTGGACATAAGATGGTTTGTTTTTTTTTCAGGTCAACAAACCTT
TGGACTAGTCCGAAAAAAATTGACACAAACTGTTTGGCCAACAAGAAAAA
TGACCAGTTTGAAGTCTGAAAAAGGTTCGTGTTGTAGAACAACGTTCATC
TTTTAATAGATTTACTTCTTTTATCCTCAGAACCTTTTCCTCTTTGATCC
CCAGGGGATAAAAATTCCAATTGAAATCTCAATGGGGATAGAAATTCTAT
TGTTCCAAGATTAAAAAATCCAGTGCGGATAATTTCGGAGAGCAATTTTT
AAACATTGAATTTCGAATGGGGGTGAAATCAAAGTCAATTTCCCAGTGGG
GCTGAAATTATAGGGTATTTTTCCACCGGGACGAGATTTTTGCCAAGTTT
TCGGGTCTGTGATACAGGGGTGTATTGCGCTAGGAAAGAATATTCACTCC
CTAATGAAGAGTAAAGAAACTACTTGATAGCACCAAATAAAGATATTGTT
TTGGGGATCGTCGGGAAATTTCAATTCTATAACAGGAAACAATGTTGTAG
GCCCTGATCTGTGACTCGTGAGCCCGGGGCGGGGCACTTTGGCAAACCTG
GGTACGGGGACGTGCCACTGGTAAGGGTTCTTTTTTAGGCTCTCTGAAGA
TATCTGACAGGGTCCCAAATTGACTAATTTACAAAATATGTATCCGACCA
GGGTCTACTTTTGGTAATTTTTGGAAATTCATGGGTGTAAATTAGAAGGG
TTTTCAATTTTTCGTCTACTTTTAGTTATTTTGGCCACTTTTCAGGGTTT
AAGTCTTTCTGACAGGGTCCCAGATTTACCAAATATTCATATCTGACAGG
GTCTATTTTTCAAACTCCAGCGGCACGTTCCCGTCGGCCGTCAAGCCAAG
GTCAGCAGTGACCGGGCTCACGAGATCGTTCTTTATAAAAAAACCTACCA
ATCTGACTCTTTTCCAGATATTGAGCAACTTTGGTAACTGGACAATGTTT
CCTTTCAAATGGTACAAAATCTGTGCCAGGTTGTCTACATCTCCGTCCGA
AAGTTCACTAAACGACTGTCCAGATTTCGAATGATTTGTGATAGCAGAGT
ACGAATACCTCCATGTTATGGCGGCCGATTGGAATGCCATTGTTGGAAAA
AGCAATGTTTCAGGTAAATCTAAAAAAATTAAAAGGTCATTGTCATAGGT
CATTTTAACGAACAAAATGAATCACGGCTAACTAGGACTGATTGCGCCCC
CATAACGGCTACCTGCTGGCTAAACGCAAAGACACATTTCATCTAGTGTA
GCGCTGCTGTTTCACGAAAAATCTTTGCGCTGGCTTTTAAATTTTACAGA
CCAGAATAAAAATTTCAGTTTTTAAGTCGACTGGTCCACCGTGTTGTTTC
TATTTAACCTTAGATTTTCGAGCGTTTGAATTTCAAAACATTCGAATGAC
GCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008065XLOC_008065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014437-exon-sc0000187-1575043694:287829..287985TCONS_00014437-exon-sc0000187-1575043694:287829..287985Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1575043694:287281..287355TCONS_00014437-exon-sc0000187-1575043694:287281..287355Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1575043694:282562..282648TCONS_00014437-exon-sc0000187-1575043694:282562..282648Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1575043694:281523..281718TCONS_00014437-exon-sc0000187-1575043694:281523..281718Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1575043694:281230..281272TCONS_00014437-exon-sc0000187-1575043694:281230..281272Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1510915933:287829..287985TCONS_00014437-exon-sc0000187-1510915933:287829..287985Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1510915933:287281..287355TCONS_00014437-exon-sc0000187-1510915933:287281..287355Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1510915933:282562..282648TCONS_00014437-exon-sc0000187-1510915933:282562..282648Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1510915933:281523..281718TCONS_00014437-exon-sc0000187-1510915933:281523..281718Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1510915933:281230..281272TCONS_00014437-exon-sc0000187-1510915933:281230..281272Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1491911889:287829..287985TCONS_00014437-exon-sc0000187-1491911889:287829..287985Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1491911889:287281..287355TCONS_00014437-exon-sc0000187-1491911889:287281..287355Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1491911889:282562..282648TCONS_00014437-exon-sc0000187-1491911889:282562..282648Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1491911889:281523..281718TCONS_00014437-exon-sc0000187-1491911889:281523..281718Clytia hemisphaericaexon
TCONS_00014437-exon-sc0000187-1491911889:281230..281272TCONS_00014437-exon-sc0000187-1491911889:281230..281272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:281230..287985 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.162476	0.146247	0	0	0	1.46569	3.01127	1.80632	0.619528	6.48944	2.11219	0.120847	0.24636	0	0.0795463	4.56019	27.2069	0.414496	0	1.15761	0.819544	0.303157	2.2603	0.390219	0	0.411325	0	0.114756	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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