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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014421 ID=TCONS_00014421|Name=TCONS_00014421|organism=Clytia hemisphaerica|type=transcript|length=2510bp
ATGGATCAACATCATCTGGGTTTTTCTCCATTTCAAAGAAAAGATAATTC
TTCAAATAGTAGGAAGGTAAACTTGGCTTAGTGTGAGATTCATAATCTGG
ATGCTTTATCCAAGCCGCAGAAAAAGATGGCAGCCATTCTCTAAGAGCCT
TTGCTAACATGTATCCTAATTTGTAGCCTGGAGGGCAAATATTGAAGATC
TTGGTTTCGATTTTGGAAAAGGATATCCGAAACATATCATTCTTTCCATA
GTAATCATTGCAGTCAAGGTCATCTTTGGGTGGTTTGACGACAATAAGGC
AGCCTTCTTTTACGGCATCTTTGAGGACTGGGCTATTATAATTCTTACCA
CTCATACATTTCGGCAACCAATCTTTTATTTCCAGGGCAATTACAAGATC
GATTGATACGGGTAGGAATCGATACTTAGGACCAATCCATAAAATCTCCA
TCGAAGCAATCGATGAATTACAATCTGGGCCTTCTTTAAGCACGCGAAAT
GCAACGGTGTCAATTGATTCGAGTCAGCCAAGTTTGGATCCAACNCAATC
GATGAATTACAATCTGGGCCTTCTTTAAGGTATATTCCAAGACCATCCCA
AATTGAATTCTTGGACGCAATATGATTTATAATAGTGTATATATTTTGTG
TTAATTTTGAAGCCTCCAGATACTCTTCATTGTTGAAATAGCGTCCCTGC
TCCTTGTCGATATCGGATAATCCTTTAGCCCTGCAAAATCCTGATGGGCA
GCTGTTTTCAATTATTCTAACTGTTCCTTGAAAGTTATCTAGGTAGAGCA
GATAATCAAATTCATCAGGATAAGTGACTTTTGTACCTTCACTGACACTG
CCAGACAAAACAGGTGTAAATGAAAGTTCAGGATGAGTCTCCCGAACTTC
ATCAGCAATACGTGTCAGCAACGTTTTTATATTTCCGGAAAGAGATTGAA
AATCTACATTTTCGTCTATTTTGGGGCcttctaaaaagtttttaactATG
AAAGTCATAACATTTTTTCGATCTTCATTGTTCAAAATATGCTCGTCTAT
ATCCTTGATGTAAATGGTTTCTGGTATTGTGTTATCCTCGTTAAGCACTT
CTACAGGGTCAAGAAAAGAAGAGGTGGAAGGCTGCAGTGACCCTTTCTCT
TTCAATAACTCAATAACTTCACAAGAATTTATACCGCGAACAAAATCAAT
TGGCAAAGCATTATGGTTAGATTCGGTGTTAACATCAGCTCCGTGTTTTA
ATAAAAgctcaataatatttttatttttcttccagCACGCGAAATGCAAC
GGTGTCAATTGATTCGAGTCAGCCAAGTTTGGATTCAAACCTCGTTCTAG
CAATAACTTAAcgaatatttcattttctttgactACCGAAAACGTAAGCA
GATCCCACCCAAAGGAATTTGCTGACAAGTTTGAAGATTCAAGTAAAGCA
TCCAAATCATCTGGAACGTTCTGATTTTTCGATTCAATTATCTTCATTAA
ATGAGTTCGACCTTTATTATATGGAAAATCGATATTTGCACCAAGCTCTA
GGAGAAGTTGTCTCTTTCCTTTTTGGAATTCTTCATCACCGATGCTACTG
TATTGAAAAGCAGTTCTACCATCGTCCTTAGAAAGTTTGTTGATATCAGC
ACTATGTCCAACAAGTAATTTAATGCTTCTTAAAACATCTTTCTCAATGA
TATCATAATATTTGGAAGGTCGTTGTGACGATGAACCATTAGATTCTCGG
TCATTTTCAAAGCGAATATCTTCTAGAAATACTCGTTGACACAAAATCAG
AAGTGGCGTTAAGCCACTATTATGAAACATGCCATTAATGACACGATCAA
CCGATGCATTACTCTTTTCTAAAATCAGTTTCATGGAACCGTAACAAAGG
CAGGATGTAGCTTCGTGTAATGGTAGATCATCGTCAACATTAAAACCCAA
ATCAATCAGTTTCTTACACATTTGGACACATATTGGATTGTCACTATCGA
TGTGATTATCAAGGTTATGAAATTTTCGAATACAATATGAAAGTATCTTC
GAGGTTGTTAAATCATCATACTGTTTTACATCAAAGTTTTCCAGGAAACa
atcaactttcttttgatcaAATGTTTGTTGCAATAAATCACTAAGTACGG
ATAATGTTCTGTTTGCATCATGATCTATCAAAAGTTGCATGATGTTAAGA
GAAACATGGGAATGGCAAGCATAAAATAATGATGAACCATCTCTCCTGTG
TTTTTCTTCATCTTCTAGATTTGGATTAGCTCCTTTGTTCAACAGATAGT
CGCAAATTTCATATTGGTTGCACTCGATAGCAGCATTCAAAACACGAACT
TTTTTCCCATCTGAATTTTCGATCATAGAATTGACATCCGAAGAATTGCT
TTCAACCAGTTCGTATAATTTTTGAGTTTCCCCATTTTTGATTAGATTGA
AGATATCCATTATATCATAACATTGTTATTTAGTAAGTAAAATTATTTAT
TGGTATCTAA Run BLAST on NCBI transcript from alignment at sc0000187:175033..181710- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014421 ID=TCONS_00014421|Name=TCONS_00014421|organism=Clytia hemisphaerica|type=transcript|length=6678bp|location=Sequence derived from alignment at sc0000187:175033..181710- (Clytia hemisphaerica)
ATGGATCAACATCATCTGGGTTTTTCTCCATTTCAAAGAAAAGATAATTC
TTCAAATAGTAGGAAGGTAAACTTGGCTTAGTGTGAGATTCATAATCTGG
ATGCTTTATCCAAGCCGCAGAAAAAGATGGCAGCCATTCTCTAAGAGCCT
TTGCTAACATGTATCCTAATTTGTAGCCTGGAGGGCAAATATTGAAGATC
TTGGTTTCGATTTTGGAAAAGGATATCCGAAACATATCATTCTTTCCATA
GTAATCATTGCAGTCAAGGTCATCTTTGGGTGGTTTGACGACAATAAGGC
AGCCTTCTTTTACGGCATCTTTGAGGACTGGGCTATTATAATTCTTACCA
CTCATACATTTCGGCAACCAATCTTTTATTTCCAGGGCAATTACAAGATC
GATTGATACGGGTAGGAATCGATACTTAGGACCAATCCATAAAATCTCCA
TCGAAGCAATCGATGAATTACAATCTGGGCCTTCTTTAAGGTATATTCCA
AGACCATCCCAAATTGAATTCTTGGACGCAATATGATTTATAATAGTGTA
TATATTTTGTGTTAATTTTGAAGCCTCCAGATACTCTTCATTGTTGAAAT
AGCGTCCCTGCTCCTTGTCGATATCGGATAATCCTTTAGCCCTGCAAAAT
CCTGATGGGCAGCTGTTTTCAATTATTCTAACTGTTCCTTGAAAGTTATC
TAGGTAGAGCAGATAATCAAATTCATCAGGATAAGTGACTTTTGTACCTT
CGCTGACACTGCCAGACAAAACAGGTGTAAATGAAAGTTTAGGATGAGTC
TCCCGAACTTCATCAGCAATACGAGTCAGCAACGTTTTTATATTTTCGGA
AAGCGATTGAAAATCTACATTTTCGTCTATTTTGGGGCCTTCTAAAAAGT
TTTTAACTATGCAAGTCATGACATTTTTTCTATCTTCATTGTTTAAAATA
TGCTCGTCTATATCCTCAATGTCAATGGTTTCTGGTATTGTGTTATCCTC
GTTAAGCACTTCTACAGGGTCAAGAAAAGAAGAGGTGGAATGCTGCAGTG
ATTTTTTTTCTTTCAATAACTCAATAACTTCATTCGAATTTATACCGCGA
ACAAAATCAATTGGCAAAGCATTATGGTTAGATTCGATGTTAACATCAGC
TCCGTGTTTTAATAACAGCTCAATAATATTTTTATTTTTCTTCCAGCACG
CGAAATGCAACGGTGTCAATTGATTCGAGTCAGCCAAGTTTGGATCCAAC
NCAATCGATGAATTACAATCTGGGCCTTCTTTAAGGTATATTCCAAGACC
ATCCCAAATTGAATTCTTGGACGCAATATGATTTATAATAGTGTATATAT
TTTGTGTTAATTTTGAAGCCTCCAGATACTCTTCATTGTTGAAATAGCGT
CCCTGCTCCTTGTCGATATCGGATAATCCTTTAGCCCTGCAAAATCCTGA
TGGGCAGCTGTTTTCAATTATTCTAACTGTTCCTTGAAAGTTATCTAGGT
AGAGCAGATAATCAAATTCATCAGGATAAGTGACTTTTGTACCTTCACTG
ACACTGCCAGACAAAACAGGTGTAAATGAAAGTTCAGGATGAGTCTCCCG
AACTTCATCAGCAATACGTGTCAGCAACGTTTTTATATTTCCGGAAAGAG
ATTGAAAATCTACATTTTCGTCTATTTTGGGGCCTTCTAAAAAGTTTTTA
ACTATGAAAGTCATAACATTTTTTCGATCTTCATTGTTCAAAATATGCTC
GTCTATATCCTTGATGTAAATGGTTTCTGGTATTGTGTTATCCTCGTTAA
GCACTTCTACAGGGTCAAGAAAAGAAGAGGTGGAAGGCTGCAGTGACCCT
TTCTCTTTCAATAACTCAATAACTTCACAAGAATTTATACCGCGAACAAA
ATCAATTGGCAAAGCATTATGGTTAGATTCGGTGTTAACATCAGCTCCGT
GTTTTAATAAAAGCTCAATAATATTTTTATTTTTCTTCCAGCACGCGAAA
TGCAACGGTGTCAATTGATTCGAGTCAGCCAAGTTTGGATTCAAACCTCG
TTCTAGCAATAACTTAACGAATATTTCATTTTCTTTGACTACCGAAAACG
TAAGCAGATCCCACCCAAAGGAATTTGCTGACAAGTTTGAAGATTCAAGT
AAAGCATCCAAATCATCTGGAACGTTCTGATTTTTCGATTCAATTATCTT
CATTAAATGAGTTCGACCTTTATTATATGGAAAATCGATATTTGCACCAA
GCTCTAGGAGAAGTTGTCTCTTTCCTTTTTGGAATTCTTCATCACCGATG
CTACTGTATTGAAAAGCAGTTCTACCATCGTCCTTAGAAAGTTTGTTGAT
ATCAGCACTATGTCCAACAAGTAATTTAATGCTTCTTAAAACATCTTTCT
CAATGATATCATAATATTTGGAAGGTCGTTGTGACGATGAACCATTAGAT
TCTCGGTCATTTTCAAAGCGAATATCTTCTAGAAATACTCGTTGACACAA
AATCAGAAGTGGCGTTAAGCCACTATTATGAAACATGCCATTAATGACAC
GATCAACCGATGCATTACTCTTTTCTAAAATCAGTTTCATGGAACCGTAA
CAAAGGCAGGATGTAGCTTCGTGTAATGGTAGATCATCGTCAACATTAAA
ACCCAAATCAATCAGTTTCTTACACATTTGGACACATATTGGATTGTCAC
TATCGATGTGATTATCAAGGTTATGAAATTTTCGAATACAATATGAAAGT
ATCTTCGAGGTTGTTAAATCATCATACTGTTTTACATCAAAGTTTTCCAG
GAAACAATCAACTTTCTTTTGATCAAATGTTTGTTGCAATAAATCACTAA
GTACGGATAATGTTCTGTTTGCATCATGATCTATCAAAAGTTGCATGATG
TTAAGAGAAACATGGGAATGGCAAGCATAAAATAATGATGAACCATCTCT
CCTGTGTTTTTCTTCATCTTCTAGATTTGGATTAGCTCCTTTGTTCAACA
GATAGTCGCAAATTTCATATTGGTTGCACTCGATAGCAGCATTCAAAACA
CGAACTTTTTTCCCATCTGAATTTTCGATCATAGAATTGACATCCGAAGA
ATTGCTTTCAACCAGTTCGTATAATTTCTGAGTCTCCCCATTCTTGATAA
GATTGAAGATATCCATCATACATATTGTTATTTAGGAAGTAAAATCATTT
TATTGGTATCTAAACGAGAAAAAAAATTGAAATCATTGAAATGTTATTTG
TGAGTGATCTGCGAGTACTAGTAGTTACATGGCTGATTGCACTATATGAA
CAAGGAATTACACTGCAAAATTTCAAAAAAAAATTATAGACACACAAAAG
GTCGAAATTATCAAGAAACTCGTTACAATAGACCTTATTGGAGTTTTTGA
TTTTTATAAAAAAGCGATGGATTGTGGGATTGTTTCGAGTGTATTACAAT
GGAAATCTCTTAGGAAATCCTCGAGGGAATTCTATTGTAATAAACTCGAA
ACAATCCCACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAG
GTCTATTAGAATTAACCCTTTAAACTGCCGTGGCTTTTCTTTACACCCTC
GACCTATTTGCCAATGTCGGCATATGCCGACATAAGAAAAAAGTAGCGAT
TTTCATTTCATTTTCTGAATAATATATGAAGTTTAGGATTAATTTTTGAC
CATCAAAAGTGACGTAAAATGATGCTCTCCTCTCAAAAGACACTTAAATA
AATATTAAAAGCACAAAAAAATTACACGTGTTGATAACAGCATAAGTACC
CGAAGCCAAAAAAAAAAAAACATTCTAAGAACATTTCAAGGCTTCGCAGA
TTCTAAAACGTGCAAAGAAAATGATGGAAATATGAACACTTTTATTTAAG
AACAATTTTACAGTGTACTACGCTTTACACTCAAAAAACATCCCAAAACT
TCGAAACTTTTAGACATTCTGATAAAAAACAACAATGTGTCATTTAAATA
ATATGAAGAGGGGTTTATATTGATAACATATAGCCCAAGTTTACAGTAGC
AGGTGGGTTAACTAAAAAGGCAATTTTTAGAAGATTTTGGCGCCGCTTGA
GTTTTGAGTTTCTCAAAATTGCATTTTTTTTCGGAGTTTGTTTTCTTCTA
AGTTTTAATCAATGTCTTGGCTGGAAAAAGATTTATGACTGTGAGAAAAA
TGAATTACAAATACCGTGTAGCCATTTGCTGAAAATTTACAAAAAAAATA
AAAAATTACCTGCAGCTAAAATTTTGTGAATTTGTAATGACAAAAAAAAA
TTAAAAATAATTATGATAAAAAATAATTATATAAAAAACCGTTCAATGCT
ATTTAAAAATGTATTCTTTTATTGTAACTGTAATTTAAGAAGAACAAAGT
TCTTTTAAAGTGCTCAATACAACTTCTTCATTTCTTGAAAAAAAAAAAAA
TTTCTCCGTCAAATATTGAGCATTGCCATTTTGCATCTTTGTGGAAAAAA
TCATCCAATCCCGATAAAAGCTTGTAACAAACGGAAAAACAAAAGAAAGG
GCGGACGGACATAGTTAAATTCATTAAACCTCAAGGTAGGCCCAAAAATT
AATCATCAGAGTCAGTCAAATCCGTAAAATCCGTCAAATCCCATTCTTCC
ATCATTTTCTTCAGAGTCTCTTTCTTACAGCGAATTTGATCAGGTGTCCT
CTGGAGCAAAACTCTTCGTAAAATTTCACTGATGATCCAACTAATTGTAC
GTTTCTCATAATTCTCTCGATCACATTCAAGCTCTGGACTGTTATCCAAA
ATCATATCACCAAACTCATTTTTACCATAATCATTAGGTAATCGAGACCT
TTTTCTAGGTAGAATCCAAGACCATCCCAAATCTTGTTGTCAGAAATAAT
AATATTGATAAATGTGTAGAAAAATTCTGTTATCTTTGTACTTCTAAGGT
TGCCTTGTTTGTCAAAGTATACTTCGTACTCTTTTTTAATATTTGGTTGT
TTTTTAGCCTTGCAGAAACCAGGAGGACTTCCGTCTTCAACAATTTGGAC
AATATTATGAAAGTGATTAAGACATAGCAAGTAATCAAATTCATCAGGAT
AATCGACTTTTGTACCTTCGCTGACACTGCCAGACAAAACAGGTGTAAAT
GAAAGTTCTGGAAAGATCTCTCGAAAGCGGAAGGTAATCCTGTGTAACAA
AATATGAACACGCATCAAAATCAATGCGTAATTTTCACTGTCCTTTAATT
CTGGGCGTTTTAAAAACGTACTAACCTTTGTGTGAAACGTACACATCTCA
TCCTCGCTGCTCTCGTAAACGGTGCTAAAGGGTTTCGCTTCTTCATTCTT
ATCACTTAATACTTGGTTGAAGGTGAAATCTGACGATTCTTCAGAGACAT
CAATAGAACCATTATCCATCAGCAACTCTTTGATTTCAATCGAATTCGGA
CCAAACACATAATGACTTGGTAAACCTCCAAACTTATCCTTAGCGTTAAC
ACGTGCACCATATTTTAAAAGTAATTTAATGATATCGATATTCTTTCTCC
AGCAAGCGAAATGTAACGGACTCATTTTATTTGAGCCAACAAGATTCGGG
TCGAATTTTCGGTTCAATAACAACTCGACAAACCTTTGGTTTTCAATGTA
TACCGAAAAAGTCAGCAAATCCCATCCGAAGCAATTTTGAAAATCGGAGG
AATCCATCAAAAAATCAACATTATCTTTGTCATCAAAATCGTCATTTTTC
TCAATTAATTTCATCAGAAGAGTTCGACCTTCGTTATAAGGAAAGTCAAT
ATTTGCTCCTAGCTCTAATAAAACTTCTTTTTCTGCTAAACGACCAGTTT
TGTGAACGATATTAAATGCTGTTTGTCCTTCATTACTGAGTAGATTGATA
TTTGTACCATCTCCAGCTAGTAGTAAACGAATGCATTTCAAAACCTCTTC
TTGTTTTTCAATTGGATCTAACTGAATTTGGCATAATATATGAAGTGGTG
CCAAACCTAGTTGGTTCAATTCATTAACGGAAATATTACTTTTTTCTAAA
ATAATTTTCATGGATCCGTAACAGAGACAACAAGCAGCTGTATGCAACAC
GTCCTTCTCGACATTAAACCCAATATCAGTCAATTTCTTACACATTTGAA
CACATATTGGATTTTCATTGTTGATGTGATTTTCAAAATGATGAAGTTTG
ACAATACACCGTGACAGTAAAAATGAAGTTTCATGGTTTGTGACATCATA
ACCTTCTAAAAGAAAGTCAGCTTTTGTTTGATCAAAGGAATGAAACAGAT
GAAATAATACAGGTGGATGTGATGTATATCGGTCAGCACCATTAAGTAGC
AACAGCTTCACGATGTTCGGAGAAACGTGTGATTTACAAGCGAGCCATAA
TGATGTTTCTTGGTCCGAATTTGATTCACCTCTCAGATTTGGATCAGCTC
CTTTGTTCAACAAATATTCACAAATTTCATATTGGTTGCACTCGATAGCA
GCATTCAAAATGCGAACTTGTTTCCCATCTGAATTTTCGACCATAGAATT
GACATCTAAAGAGCTGCTTTCAACCAATCCACATAATTTTTGAGTTTCCC
CATTTTTGATTAGATTGAAGATATCCATTATATCATAACATTGTTATTTA
GTAAGTAAAATTATTTATTGGTATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014421-exon-sc0000187-1575043694:181221..181710 | TCONS_00014421-exon-sc0000187-1575043694:181221..181710 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1575043694:178591..180514 | TCONS_00014421-exon-sc0000187-1575043694:178591..180514 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1575043694:175033..175128 | TCONS_00014421-exon-sc0000187-1575043694:175033..175128 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1510915933:181221..181710 | TCONS_00014421-exon-sc0000187-1510915933:181221..181710 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1510915933:178591..180514 | TCONS_00014421-exon-sc0000187-1510915933:178591..180514 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1510915933:175033..175128 | TCONS_00014421-exon-sc0000187-1510915933:175033..175128 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1491911889:181221..181710 | TCONS_00014421-exon-sc0000187-1491911889:181221..181710 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1491911889:178591..180514 | TCONS_00014421-exon-sc0000187-1491911889:178591..180514 | Clytia hemisphaerica | exon |
| TCONS_00014421-exon-sc0000187-1491911889:175033..175128 | TCONS_00014421-exon-sc0000187-1491911889:175033..175128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000187 | supercontig | sc0000187:175033..181710 - |
Blast
The following BLAST results are available for this feature:
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