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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014394 ID=TCONS_00014394|Name=TCONS_00014394|organism=Clytia hemisphaerica|type=transcript|length=1688bpRun BLAST on NCBI protein sequence of TCONS_00014394-protein >TCONS_00014394-protein ID=TCONS_00014394-protein|Name=TCONS_00014394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp MSKDANKFKFGNLHLKNAEEVSNYTKTFIEQAEYNITQCIPDKIFLLEKLRun BLAST on NCBI transcript from alignment at sc0000187:371375..390983+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014394 ID=TCONS_00014394|Name=TCONS_00014394|organism=Clytia hemisphaerica|type=transcript|length=19609bp|location=Sequence derived from alignment at sc0000187:371375..390983+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000187:371375..390983+ >TCONS_00014394 ID=TCONS_00014394|Name=TCONS_00014394|organism=Clytia hemisphaerica|type=CDS|length=9288bp|location=Sequence derived from alignment at sc0000187:371375..390983+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014394 vs. Swiss-Prot (Human)
Match: PSME3 (Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.416e-45 Identity = 98/245 (40.00%), Postives = 158/245 (64.49%), Query Frame = 3
Query: 132 VSNYTKTFIEQAEYNITQCIPDKIFLLEKLDKEEFKCYKDIASIEVDIELS-QEAINFSRKNQNNDEAPSNPAVKKRKLDNGED--NDSKIPSVP-----CNXXXXXXXXXXXXXXXXXXTTCEKLKTWIQLLIPKIEDGNNFGVSIQEEVLNEVHRIEADSINYLDGISRYFITRGKIVSKVAKYPYLDDYKRAIKEVDEKEYLTLLFSVNDIKSHYLLILDLVSKNYEKIKKPRSQSNIDSMY 842
V ++ + +AE + P K+ L+ KE D+ I D+ L + I + N+ + P KKR+LD E+ +K+ +P N++L+ +I+ +KPEI+ LI C +K W+QLLIP+IEDGNNFGVSIQEE + E+ +E+++ +YLD ISRY+ITR K+VSK+AKYP+++DY+R + E+DEKEY++L ++++++ Y+ + D++ KN EKIK+PRS SN +++Y
Sbjct: 15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLT----NSHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRS-SNAETLY 254 The following BLAST results are available for this feature:
BLAST of TCONS_00014394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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