TCONS_00014364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014364
Unique NameTCONS_00014364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014364 ID=TCONS_00014364|Name=TCONS_00014364|organism=Clytia hemisphaerica|type=transcript|length=2666bp
cttcgcccgggtcaacccatcaTGCAATGTGAGGTAATTgcgtagtcagt
ccaaggtgctgacagggcgctcattgaaagcgtctatagttgcaaaaata
ggcctcaaagcctcctgcaacttaaccaaaatagaaatagaaactgCTGC
ACTCATGACTCTCAGGGCAGTTTTAGCTGGGTTTGTGAACTCTTGATTCT
AGGGCAGGTTCAGCTGGGTTCGTGATTCCAGGGCAGTTTCAGATGGATTC
GTGATTCTAGTGCAGTTTCAGCTGGATTCATGATTCTAGGGCAGGTTTAG
CAGGATTCTTTGTTCTAGGGCAGGTTTAGCAGGATTCGGGATTCTAGGGC
AGTTTCAGCTGGATTCGCGATTTTAGGGCAGTTTCAGCAGGAttcgtgat
tctagggcagtTTCAGCTGGATTCATGATTTTAGGGCAGTTTCAGAAGGA
TTCGTGATTCTAGGGCAATTTCAGCAGAAATACTTTCAGTTGATTATGAT
TCTGCTAGATATAAAATAGACATTTTTCAACCAATGGATGTATCAACTTT
GCAGAATaagaaatgtcaaaatttgatgaaCAATTTACCCAATctcgtga
aaatttcagatttaaGCTATACTGTATGCCCCAGTTGACATCCTGGTTTG
ATTCTTAGTTTGATTCTTAGTCAGGTTCTAAGTAATgaattttgaacttt
gaaatGGACATAAAAAACCCTCTTTTCCTATTTAGAATTAAAATTATTTC
GAAAAAAGAAAGCAATGAGATAAAGAAATGAGATGGGTGACAGacttaaa
gaaaataataatagtATTCCTGGTAAATCAGGAGCTGCGCATGCATGGAA
CATAGcttTTAACGATTTGAAAAGGAGATTTTGGCAGAGCCAGACAGACA
ATCAAAATCTCCACGCTGAAGTGAAACAACTAAAGGACTACATATCGTAT
TTGGTGAAGCAGAATCGTCATTTGAACAGCTTGCTTGCATCCAAAAATCT
ATCCCTTACCAAAATGGAGGAGAATCAAAAAACACTACGCGACCAAGAGA
AGAAACAAGACCAGTACCTTAAAGATGTGTCCTCAAAGATTGAAGATTTG
AATGCCGAAATCAGTTTGTATCAAAAAGAAAGATCTAAAGTTATTAATGA
GAACCAAAACTTTAGATCTACAATAGAGCAATTGTACAAAGACAAGAAAC
AGattgaaaatgaactggaaaatctgaaaaacattCCAGAAATTTCCATA
AGCCCAACCACTTCTACTGCAACAATTACAAAAAATGAAGTCAACAAGGA
GTTTGAAGACCTTTTATCTGAAAATAAACATTTGAAGACCAGCATTCACT
GGATGAGTGATGAATTGAATAAGTTGAAAAGTGAGAAACAGATACACGAT
ATCCAAAGAACTACTTATCCACAATCTGGTTGTCTTGAAGAAGGCATTGG
GAGGTTAAATTTAAGTCAATCCATTAACACCAAAAGTATGGATATTGCTG
GATACATAAATATATTGCACAACACCATAAGTGTTTTAAAACATAACTTG
TCAAGGAGTCTTACTTATTTACGgattgtttcaaaaacaaactCATTGAG
ATTAGACACCTTGCCAAAGAAAGATGACCTGCTATATGACTCTGGTATTG
TCAATATGGAACCAAACAATGATGACCAGCAAGTGAATTTCAATATCCAA
ATGGCAGCTGGCAATCAAGACCAACACTACCCTGATCAATCAAATGCAGA
ACCAAATACTCACCATACTATTCACAAAGTTAATAGCAGCCCTGAACTTT
ATCCATCTCTTCTTCAGAATCTACAAATGCAGCAAACAAAAACTTATCTG
AATTCGAATCATGGCCCTGTGAACCAATACAATGAGAACTTACCCATAGC
TCCAGTTCGTCCACCAAGAAGGATACCTCTTTATGAAGAATACAGTAGTG
ATTGACATATTTTGACTAAGCCTCGTAACAAACAATTGTGACTCTACAAG
CGAATTGCACCAGAAATCAAACCAGTCTTGGGACATGATTTTGTAAGGGC
CAGTGGATAACCAGTAAAAATTAACCAAAGGCTGTTATGGGTCCAGTTAA
TTTTAAGTGGCCATCTTGTAACATCTATTTCAACATTCCAGCTATTGACT
ATTGGCTGGTCTACATTCTtctaacaaattttttttaacaaacacaTGGG
CCAGTAAAAAAAGTGACCCAAACTGTCAGGGACTGGTCGTAATCAAATAA
AGGCTAATTTGAAAGAAAGCCTGTACAGtgagaatttgaaattttatcca
GTTGATCACCACAAGACTGCTCTTAAATGCAGTACCATTACTCGTCGGAT
TTTCAGATACTTAGTattgcttggggagtcacaattAAATTTAAACAATT
AAATATCATATTGAGTATCTTTGAAGGAAGATAACTTACTAGATTGATTT
TTATTACGGatgcaaaaaaatcacaatAGGCTATTAAATTGGTTTTTGAT
TTGAATAGTCTGAATAGCATATTTTTCTTATGATACGTTTTTGTGAATTT
GATATGGAGTGAATTTGTACATGAGAGgtgtttattttcaaaatattatt
tataaACTAAAAGCTATAATTGTTATGTCAAATATGTCTTAAATCTTATC
ATTTTATGTTTCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000187:155243..158432+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014364 ID=TCONS_00014364|Name=TCONS_00014364|organism=Clytia hemisphaerica|type=transcript|length=3190bp|location=Sequence derived from alignment at sc0000187:155243..158432+ (Clytia hemisphaerica)
cttcgcccgggtcaacccatcaTGCAATGTGAGGTAATTgcgtagtcagt
ccaaggtgctgacagggcgctcattgaaagcgtctatagttgcaaaaata
ggcctcaaagcctcctgcaacttaaccaaaatagaaatagaaactgCTGC
ACTCATGACTCTCAGGGCAGTTTTAGCTGGGTTTGTGAACTCTTGATTCT
AGGGCAGGTTCAGCTGGGTTCGTGATTCCAGGGCAGTTTCAGATGGATTC
GTGATTCTAGTGCAGTTTCAGCTGGATTCATGATTCTAGGGCAGGTTTAG
CAGGATTCTTTGTTCTAGGGCAGGTTTAGCAGGATTCGGGATTCTAGGGC
AGTTTCAGCTGGATTCGCGATTTTAGGGCAGTTTCAGCAGGAttcgtgat
tctagggcagtTTCAGCTGGATTCATGATTTTAGGGCAGTTTCAGAAGGA
TTCGTGATTCTAGGGCAATTTCAGCAGAAATACTTTCAGTTGATTATGAT
TCTGCTAGATATAAAATAGACATTTTTCAACCAATGGATGTATCAACTTT
GCAGAATaagaaatgtcaaaatttgatgaaCAATTTACCCAATctcgtga
aaatttcagatttaaGCTATACTGTATGCCCCAGTTGACATCCTGGTTTG
ATTCTTAGTTTGATTCTTAGTCAGGTTCTAAGTAATgaattttgaacttt
gaaatGGACATAAAAAACCCTCTTTTCCTATTTAGAATTAAAATTATTTC
GAAAAAAGAAAGCAATGAGATAAAGAAATGAGATGGGTGACAGacttaaa
gaaaataataatagtATTCCTGGTAAATCAGGAGCTGCGCATGCATGGAA
CATAGGTAAGAAATTTGGAGTTTACTAATCAATTTAAATTGACTAAAAAC
TGCTAATGATTCATCATTCTCTTAAGAGAGTGCTTGTTAATGTGCAAGCC
AATAACATATCAATTATTAacacttaattttttttattatgataCAGAAG
CTTATTTGGTTTGATGAACttcattttatttacttttgcTTCTTTATTAA
GTACTGtgcttgaaattattttcttttatttaaaagcttTTAACGATTTG
AAAAGGAGATTTTGGCAGAGCCAGACAGACAATCAAAATCTCCACGCTGA
AGTGAAACAACTAAAGGACTACATATCGTATTTGGTGAAGCAGAATCGTC
ATTTGAACAGCTTGCTTGCATCCAAAAATCTATCCCTTACCAAAATGGAG
GAGAATCAAAAAACACTACGCGACCAAGAGAAGAAACAAGACCAGTACCT
TAAAGATGTGTCCTCAAAGATTGAAGATTTGAATGCCGAAATCAGTTTGT
ATCAAAAAGAAAGATCTAAAGTTATTAATGAGAACCAAAACTTTAGATCT
ACAATAGAGCAATTGTACAAAGACAAGAAACAGGTTTGCTATTCATaatg
tttttcaaattcagttttATAAAAGTGGTTTGTTGGTTTTTAATAATCAT
TTATAGGGAAATGCAACTAAATCCATGAATTTATTGTGAATCTAGTCAAC
ATGATTTAGATTCTTTTTCTGTTAAATTTCCATTCCACTACCTTTGTGAC
TCTGCAGATAAAGTCAAATACAAACTAAAGATTTTTACACATTTgtcaca
ctttttttttatttcccacTGTATATCAAGCTACAGAGCAAACATTTCAC
ATGcattttttaaaataactttttagattgaaaatgaactggaaaatctg
aaaaacattCCAGAAATTTCCATAAGCCCAACCACTTCTACTGCAACAAT
TACAAAAAATGAAGTCAACAAGGAGTTTGAAGACCTTTTATCTGAAAATA
AACATTTGAAGACCAGCATTCACTGGATGAGTGATGAATTGAATAAGTTG
AAAAGTGAGAAACAGATACACGATATCCAAAGAACTACTTATCCACAATC
TGGTTGTCTTGAAGAAGGCATTGGGAGGTTAAATTTAAGTCAATCCATTA
ACACCAAAAGTATGGATATTGCTGGATACATAAATATATTGCACAACACC
ATAAGTGTTTTAAAACATAACTTGTCAAGGAGTCTTACTTATTTACGgat
tgtttcaaaaacaaactCATTGAGATTAGACACCTTGCCAAAGAAAGATG
ACCTGCTATATGACTCTGGTATTGTCAATATGGAACCAAACAATGATGAC
CAGCAAGTGAATTTCAATATCCAAATGGCAGCTGGCAATCAAGACCAACA
CTACCCTGATCAATCAAATGCAGAACCAAATACTCACCATACTATTCACA
AAGTTAATAGCAGCCCTGAACTTTATCCATCTCTTCTTCAGAATCTACAA
ATGCAGCAAACAAAAACTTATCTGAATTCGAATCATGGCCCTGTGAACCA
ATACAATGAGAACTTACCCATAGCTCCAGTTCGTCCACCAAGAAGGATAC
CTCTTTATGAAGAATACAGTAGTGATTGACATATTTTGACTAAGCCTCGT
AACAAACAATTGTGACTCTACAAGCGAATTGCACCAGAAATCAAACCAGT
CTTGGGACATGATTTTGTAAGGGCCAGTGGATAACCAGTAAAAATTAACC
AAAGGCTGTTATGGGTCCAGTTAATTTTAAGTGGCCATCTTGTAACATCT
ATTTCAACATTCCAGCTATTGACTATTGGCTGGTCTACATTCTtctaaca
aattttttttaacaaacacaTGGGCCAGTAAAAAAAGTGACCCAAACTGT
CAGGGACTGGTCGTAATCAAATAAAGGCTAATTTGAAAGAAAGCCTGTAC
AGtgagaatttgaaattttatccaGTTGATCACCACAAGACTGCTCTTAA
ATGCAGTACCATTACTCGTCGGATTTTCAGATACTTAGTattgcttgggg
agtcacaattAAATTTAAACAATTAAATATCATATTGAGTATCTTTGAAG
GAAGATAACTTACTAGATTGATTTTTATTACGGatgcaaaaaaatcacaa
tAGGCTATTAAATTGGTTTTTGATTTGAATAGTCTGAATAGCATATTTTT
CTTATGATACGTTTTTGTGAATTTGATATGGAGTGAATTTGTACATGAGA
GgtgtttattttcaaaatattatttataaACTAAAAGCTATAATTGTTAT
GTCAAATATGTCTTAAATCTTATCATTTTATGTTTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008043XLOC_008043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014364-exon-sc0000187-1491911889:155243..156097TCONS_00014364-exon-sc0000187-1491911889:155243..156097Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1510915933:155243..156097TCONS_00014364-exon-sc0000187-1510915933:155243..156097Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1575043694:155243..156097TCONS_00014364-exon-sc0000187-1575043694:155243..156097Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1491911889:156329..156675TCONS_00014364-exon-sc0000187-1491911889:156329..156675Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1510915933:156329..156675TCONS_00014364-exon-sc0000187-1510915933:156329..156675Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1575043694:156329..156675TCONS_00014364-exon-sc0000187-1575043694:156329..156675Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1491911889:156969..158432TCONS_00014364-exon-sc0000187-1491911889:156969..158432Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1510915933:156969..158432TCONS_00014364-exon-sc0000187-1510915933:156969..158432Clytia hemisphaericaexon
TCONS_00014364-exon-sc0000187-1575043694:156969..158432TCONS_00014364-exon-sc0000187-1575043694:156969..158432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:155243..158432 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15791	0.471299	0.241244	0.405078	1.30681	1.37688	0.899786	1.14974	0.333343	0.813421	0.217146	0.882667	0.777398	1.09227	0.3454	0.193762	0.202071	0.300231	0.223704	0.343994	0.673775	0.299103	0.80075	0.507649	0.924817	1.76861	1.22784	1.30236	0.474588	0.815957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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