|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014299 ID=TCONS_00014299|Name=TCONS_00014299|organism=Clytia hemisphaerica|type=transcript|length=2181bp
GGGGTGTATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAG
GGACGGCTTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTT
CTACTTCGACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAG
GGGTACGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTT
ctgaaaaaggtcaaaattggTTGGCTGGGTTGAAAGCACATTCAAAAGCA
TTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGA
AGAATTCAAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATC
GTACAGCAGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATT
GAATTCTTGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACAT
GGCTGAGATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGT
ATAATTATGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAG
TTCAAAGGTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTAT
GTAGAGACAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAA
GAAGAAACGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTG
CTTTCTCAAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTAT
TTGGAATTGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAG
CCAGGAAAATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGAT
TGTAACCGGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCG
CCTCTGGAAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTG
CAAACTACTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGAT
CTACGCGAACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGT
TCATCCAGTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTC
GAACCACGTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAA
AATCACTATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCT
TAGACGTATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTA
TTCTCACGTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGC
GTCAATCTTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCAT
CGATCAAAAATGGTTTTCGAAGGTAACGNTGGGCAGCTTCACTCAGTATT
GCATCGATCAAAAATGGTTTTCGACGGTGCGGTATTTCTCCAGTCGATTG
CTCGCAGTATCCAACCAACCGCTTCAACACACTCCTGAAAAATCGCTATG
ACACTTGGGTTGCAGAAGGGAAAAACCACTATCGAGCGAAGAGCTTGACC
GTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAAGTGATAGACCAGTTCAG
CCACAACCTACGAAGGTAAGTTTTTTTAATAGAGACATGAATTACAAATT
CCTTTCGCTGTGGTTATTAATTTTATACTAAAAAACCTTATAAAGTTATC
GCTAGATAATGTAAATCAATTGCATTCATTTTCAGGTCGTTCTGGTCGAA
TTGTATCGTTTTTCATGCCTGATGAAAACCCAGACGAGTTGGTCCCAATT
TCCAGTTGCCTCACAACGCCGTCATCTGGACAAAATACACCATCGGGCAG
CGTCCAACCATCGCCCGCTATGTTGTCGGGCAGCGTCCAACCATCATCCG
TTACGCCATCGGGCAGCGTCCAAGCATCGTCCGTTACGCCATCGGGCAGC
GTCTAACCATCGTCCGTTACGCCATCTGGCACCGTTCAACCATCGTCCAC
TACGCCATCGGGCAGTGTCCAACCATCGGGCAGCGTCCAACCATCGTCCA
TTACGCCATCGGGCAGCGTCCAACTATCTTCCGTTACGCCATCTGGCAGC
GTTCAACCATCGTCCGCTACGCCATCGGGCAGCGTCCAACCATCGTCCCC
TACGCCAATTACAACAACATCAACAGAAAGC Run BLAST on NCBI transcript from alignment at sc0000185:29711..32183- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014299 ID=TCONS_00014299|Name=TCONS_00014299|organism=Clytia hemisphaerica|type=transcript|length=2473bp|location=Sequence derived from alignment at sc0000185:29711..32183- (Clytia hemisphaerica)
GGGGTGTATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAG
GGACGGCTTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTT
CTACTTCGACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAG
GGGTACGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTT
CTGAAAAAGGTCAAAATTGGTTGGCTGGGTTGAAAGCACATTCAAAAGCA
TTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGA
AGAATTCAAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATC
GTACAGCAGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATT
GAATTCTTGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACAT
GGCTGAGATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGT
ATAATTATGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAG
TTCAAAGGTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTAT
GTAGAGACAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAA
GAAGAAACGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTG
CTTTCTCAAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTAT
TTGGAATTGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAG
CCAGGAAAATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGAT
TGTAACCGGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCG
CCTCTGGAAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTG
CAAACTACTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGAT
CTACGCGAACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGT
TCATCCAGTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTC
GAACCACGTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAA
AATCACTATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCT
TAGACGTATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTA
TTCTCACGTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGC
GTCAATCTTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCAT
CGATCAAAAATGGTTTTCGAAGGTAACGNTGGGCAGCTTCACTCAGTATT
GCATCGATCAAAAATGGTTTTCGACGGTAACATTTTGGTTTATAAACCGT
TTGTAGGAAATTTTATATACTTTCGAATTTATTTTTGCTTTTGGTTTCAA
CAGCTTCTCACTATTCTTGATGTAATTGATATTTATGACGCAATCTTTTA
TACGGAAACAACCGAAAAGGTTCGGGTTTGGATTTTAACAAGTAAAACTG
ATGACAAGTCCTAGTTAATTTTAAGTGGCTTCTTTTCTATGCATGAATAA
TACGAAGAATCAATATAAGATCCCCTTGTTTCTTAGGTGCGGTATTTCTC
CAGTCGATTGCTCGCAGTATCCAACCAACCGCTTCAACACACTCCTGAAA
AATCGCTATGACACTTGGGTTGCAGAAGGGAAAAACCACTATCGAGCGAA
GAGCTTGACCGTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAAGTGATAG
ACCAGTTCAGCCACAACCTACGAAGGTAAGTTTTTTTAATAGAGACATGA
ATTACAAATTCCTTTCGCTGTGGTTATTAATTTTATACTAAAAAACCTTA
TAAAGTTATCGCTAGATAATGTAAATCAATTGCATTCATTTTCAGGTCGT
TCTGGTCNCAATTGCATTTATTTTCAGGTCGTTCTGGTCGAATTGTATCG
TTTTTCATGCCTGATGAAAACCCAGACGAGTTGGTCCCAATTTCCAGTTG
CCTCACAACGCCGTCATCTGGACAAAATACACCATCGGGCAGCGTCCAAC
CATCGCCCGCTATGTTGTCGGGCAGCGTCCAACCATCATCCGTTACGCCA
TCGGGCAGCGTCCAAGCATCGTCCGTTACGCCATCGGGCAGCGTCTAACC
ATCGTCCGTTACGCCATCTGGCACCGTTCAACCATCGTCCACTACGCCAT
CGGGCAGTGTCCAACCATCGGGCAGCGTCCAACCATCGTCCATTACGCCA
TCGGGCAGCGTCCAACTATCTTCCGTTACGCCATCTGGCAGCGTTCAACC
ATCGTCCGCTACGCCATCGGGCAGCGTCCAACCATCGTCCCCTACGCCAA
TTACAACAACATCAACAGAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014299-exon-sc0000185-1575043694:30758..32183 | TCONS_00014299-exon-sc0000185-1575043694:30758..32183 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1575043694:30189..30497 | TCONS_00014299-exon-sc0000185-1575043694:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1575043694:29711..30156 | TCONS_00014299-exon-sc0000185-1575043694:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1510915933:30758..32183 | TCONS_00014299-exon-sc0000185-1510915933:30758..32183 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1510915933:30189..30497 | TCONS_00014299-exon-sc0000185-1510915933:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1510915933:29711..30156 | TCONS_00014299-exon-sc0000185-1510915933:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1491911889:30758..32183 | TCONS_00014299-exon-sc0000185-1491911889:30758..32183 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1491911889:30189..30497 | TCONS_00014299-exon-sc0000185-1491911889:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014299-exon-sc0000185-1491911889:29711..30156 | TCONS_00014299-exon-sc0000185-1491911889:29711..30156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:29711..32183 - |
Blast
The following BLAST results are available for this feature:
|
