|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014296 ID=TCONS_00014296|Name=TCONS_00014296|organism=Clytia hemisphaerica|type=transcript|length=2120bp
ATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAGGGACGGC
TTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTTCTACTTC
GACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAGGGGTACG
AAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTTctgaaaa
aggtcaaaattggTTGGCTGGGTTGAAAGCACATTCAAAAGCATTGTTAT
GTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGAAGAATTC
AAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATCGTACAGC
AGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATTGAATTCT
TGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACATGGCTGAG
ATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGTATAATTA
TGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAGTTCAAAG
GTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTATGTAGAGA
CAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAAGAAGAAA
CGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTGCTTTCTC
AAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAAT
TGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAA
AATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACC
GGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGG
AAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTA
CTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCG
AACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCA
GTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCAC
GTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACT
ATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGT
ATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCAC
GTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATC
TTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAA
AAATGGTTTTCGAAGGTGCGGTATTTCTCCAGTCGATTGCTCGCAGTATC
CAACCAACCGCTTCAACACACTCCTGAAAAATCGCTATGACACTTGGGTT
GCAGAAGGGAAAAACCACTATCGAGCGAAGAGCTTGACCGTCTGTTTGAA
CTTTCCCAGAGTAAGCCCCAAAGTGATAGACCAGTTCAGCCACAACCTAC
GAAGGTAAGTTTTTTTAATAGAGACATGAATTACAAATTCCTTTCGCTGT
GGTTATTAATTTTATACTAAAAAACCTTATAAAGTTATCGCTAGATAATG
TAAATCAATTGCATTCATTTTCAGGTCGTTCTGGTCGAATTGTATCGTTT
TTCATGCCTGATGAAAACCCAGACGAGTTGGTCCCAATTTCCAGTTGCCT
CACAACGCCGTCATCTGGACAAAATACACCATCGGGCAGCGTCCAACCAT
CGCCCGCTATGTTGTCGGGCAGCGTCCAACCATCATCCGTTACGCCATCG
GGCAGCGTCCAAGCATCGTCCGTTACGCCATCGGGCAGCGTCTAACCATC
GTCCGTTACGCCATCTGGCACCGTTCAACCATCGTCCACTACGCCATCGG
GCAGTGTCCAACCATCGGGCAGCGTCCAACCATCGTCCATTACGCCATCG
GGCAGCGTCCAACTATCTTCCGTTACGCCATCTGGCAGCGTTCAACCATC
GTCCGCTACGCCATCGGGCAGCGTCCAACCATCGTCCCCTACGCCAATTA
CAACAACATCAACAGAAAGC Run BLAST on NCBI transcript from alignment at sc0000185:29711..32176- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014296 ID=TCONS_00014296|Name=TCONS_00014296|organism=Clytia hemisphaerica|type=transcript|length=2466bp|location=Sequence derived from alignment at sc0000185:29711..32176- (Clytia hemisphaerica)
ATTACATTGAAACTTATTTAGCTTTTTTGTCTATTTATTTCAGGGACGGC
TTGGGGGAAGCTTGCAAAGAAGTTCAATGTACCGAAAACGGTTCTACTTC
GACATAATGAGGCCAAGACAAAAGGCAAGCTGATTGGGAAAAGGGGTACG
AAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTTCTGAAAA
AGGTCAAAATTGGTTGGCTGGGTTGAAAGCACATTCAAAAGCATTGTTAT
GTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGAAGAATTC
AAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATCGTACAGC
AGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATTGAATTCT
TGGATGAAGAAGAGAGAGAACTACGAAACTGCATAATTGACATGGCTGAG
ATCGGATTCGCCCCAACGCTTACTGACATCAAAGACATCGTGTATAATTA
TGTAACAAGTACTGCACATGCGCGAGCTCTCAAATCATTCAAGTTCAAAG
GTGTTAAAGGTGACCCGGGACCAGATTGGCTTTCTGGCTTTATGTAGAGA
CAAGAGCTGAGCCTAAAAAATGCATCAAAGATGTCTAGGGCAAGAAGAAA
CGCAACTGAGAATCCTTTCATCATAAACAACTTTTATGATGTGCTTTCTC
AAACTATCACGCAGATGGGTCTCACCGAACGTCCAGATCTTATTTGGAAT
TGCGATGAAAGTGGCCTACCTAGTGGGTTTCCTACCTAGTGAGCCAGGAA
AATGCAAAGTAGTTTCCTTGAAGGGGCAGAAAACATGCCAGATTGTAACC
GGCTCTGACAGGCAGAACACAACCGTCTTGGCTGCAGTATCCGCCTCTGG
AAAAGCACTCCCACCACTCATCCTTTTCAAGGGTCAGCAGGTGCAAACTA
CTTGGCGGCCTTCTAGACAAGATCGCGAGTACTTCCCCTGGATCTACGCG
AACAGCAGAGGTTGGATGACTGGAGACACGTTCCATAAATGGTTCATCCA
GTGGAAGAAGGTAACCAGAACCACCGACGAAGATGGTTTGGTCGAACCAC
GTCTAATGATCTACAACACGATCAAATTTTCGCGCAAGAATAAAATCACT
ATCCTAAAACTTCCACCTCATTCAACAGATTTATTGCAACCCTTAGACGT
ATCGGTTTTCAAGTCGTTGAAGGAGCACTGGGGACGAATCCTATTCTCAC
GTTTACGAATGACAAACGACCAACTATCTAAGCCAGAGTTTGCGTCAATC
TTGTCAAGTGATGAAGTCTGGGCAGCTTCACTCAGTATTGCATCGATCAA
AAATGGTTTTCGAAGGTAACGNTGGGCAGCTTCACTCAGTATTGCATCGA
TCAAAAATGGTTTTCGACGGTAACATTTTGGTTTATAAACCGTTTGTAGG
AAATTTTATATACTTTCGAATTTATTTTTGCTTTTGGTTTCAACAGCTTC
TCACTATTCTTGATGTAATTGATATTTATGACGCAATCTTTTATACGGAA
ACAACCGAAAAGGTTCGGGTTTGGATTTTAACAAGTAAAACTGATGACAA
GTCCTAGTTAATTTTAAGTGGCTTCTTTTCTATGCATGAATAATACGAAG
AATCAATATAAGATCCCCTTGTTTCTTAGGTGCGGTATTTCTCCAGTCGA
TTGCTCGCAGTATCCAACCAACCGCTTCAACACACTCCTGAAAAATCGCT
ATGACACTTGGGTTGCAGAAGGGAAAAACCACTATCGAGCGAAGAGCTTG
ACCGTCTGTTTGAACTTTCCCAGAGTAAGCCCCAAAGTGATAGACCAGTT
CAGCCACAACCTACGAAGGTAAGTTTTTTTAATAGAGACATGAATTACAA
ATTCCTTTCGCTGTGGTTATTAATTTTATACTAAAAAACCTTATAAAGTT
ATCGCTAGATAATGTAAATCAATTGCATTCATTTTCAGGTCGTTCTGGTC
NCAATTGCATTTATTTTCAGGTCGTTCTGGTCGAATTGTATCGTTTTTCA
TGCCTGATGAAAACCCAGACGAGTTGGTCCCAATTTCCAGTTGCCTCACA
ACGCCGTCATCTGGACAAAATACACCATCGGGCAGCGTCCAACCATCGCC
CGCTATGTTGTCGGGCAGCGTCCAACCATCATCCGTTACGCCATCGGGCA
GCGTCCAAGCATCGTCCGTTACGCCATCGGGCAGCGTCTAACCATCGTCC
GTTACGCCATCTGGCACCGTTCAACCATCGTCCACTACGCCATCGGGCAG
TGTCCAACCATCGGGCAGCGTCCAACCATCGTCCATTACGCCATCGGGCA
GCGTCCAACTATCTTCCGTTACGCCATCTGGCAGCGTTCAACCATCGTCC
GCTACGCCATCGGGCAGCGTCCAACCATCGTCCCCTACGCCAATTACAAC
AACATCAACAGAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014296-exon-sc0000185-1575043694:30812..32176 | TCONS_00014296-exon-sc0000185-1575043694:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1575043694:30189..30497 | TCONS_00014296-exon-sc0000185-1575043694:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1575043694:29711..30156 | TCONS_00014296-exon-sc0000185-1575043694:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1510915933:30812..32176 | TCONS_00014296-exon-sc0000185-1510915933:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1510915933:30189..30497 | TCONS_00014296-exon-sc0000185-1510915933:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1510915933:29711..30156 | TCONS_00014296-exon-sc0000185-1510915933:29711..30156 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1491911889:30812..32176 | TCONS_00014296-exon-sc0000185-1491911889:30812..32176 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1491911889:30189..30497 | TCONS_00014296-exon-sc0000185-1491911889:30189..30497 | Clytia hemisphaerica | exon |
| TCONS_00014296-exon-sc0000185-1491911889:29711..30156 | TCONS_00014296-exon-sc0000185-1491911889:29711..30156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:29711..32176 - |
Blast
The following BLAST results are available for this feature:
|
