|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014274 ID=TCONS_00014274|Name=TCONS_00014274|organism=Clytia hemisphaerica|type=transcript|length=922bp
AAGGGGTCCTGTTCTATCATGGTTTCGAAGTTATCTTGCAAACAGAAAAC
AAAGCGTCTACTGCAACGACGCTAATTCAACACCCTTACCCATGTTTCAC
GGGGTCCCCCAAGGTTCAGTGCTTGGTCCCCTTCTTTTCTTGATTTATAT
TAATGACCTGCCATTGAATTCATCATTCTCGCAGACGTTTTTTGCTGACG
ATACGTGTCTTTTTATGAGTCATAAAAACCCTGAAGCTCTTCAAAATCTT
ATTAATGTTGAGGTTGGCAAGATTTCAGACTGGCTAGGAGCTAATCAACT
TACTATAAATATATCTAAATCCTACTATATGATTTTCAGTGAGCacaaac
aaactaatttcaaCATTTCTATTTCAGGTCAGACTCTGAACCATGTCAAT
GAAGCTAAATACCTTGGAGTAATCATTGATCATAAACTGAGCTGGAGAGA
ACATCTCAAGAGACTGCACACAAGAATTAAGCAGAATATAGGTATTCTTC
ACAAAGTTGGCTGGTTTCTTCCTANGAGAGAACATCTCAAGAGACTGCAC
ACAAGAGTTAAGCAGAATATAGGTATTCTACACAAAGGCTGGTTTCTTCC
TAGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAACTCACATCTGA
CATACGGTATAACTTCATGGGGTTCCCCTGTAACCAATGGCTTGGGTAAA
ATTAATGAATCCATACTTAAATGTAAAAATTATATTAACAAGGTCAGTCC
TCCTATGGAGGATGAGACCATCTTTAACCCACTTAATATAGATCAACTAT
ATGAGCTTGAATCATGTAAACTCATACATAAATTCCTAAACAACCATCTT
CCATCTTCATTGATTTGTCTCTTCCAAAGATCTCAAACTGGCAATATGAT
CGCTaggaaaaattctaaaaac Run BLAST on NCBI protein sequence of TCONS_00014274-protein >TCONS_00014274-protein ID=TCONS_00014274-protein|Name=TCONS_00014274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
RGPVLSWFRSYLANRKQSVYCNDANSTPLPMFHGVPQGSVLGPLLFLIYI
NDLPLNSSFSQTFFADDTCLFMSHKNPEALQNLINVEVGKISDWLGANQL
TINISKSYYMIFSEHKQTNFNISISGQTLNHVNEAKYLGVIIDHKLSWRE
HLKRLHTRIKQNIGILHKVGWFLPXREHLKRLHTRVKQNIGILHKGWFLP
RKNMISLFYALVNSHLTYGITSWGSPVTNGLGKINESILKCKNYINKVSP
PMEDETIFNPLNIDQLYELESCKLIHKFLNNHLPSSLICLFQRSQTGNMI
ARKNSKN Run BLAST on NCBI transcript from alignment at sc0000185:16549..17470+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014274 ID=TCONS_00014274|Name=TCONS_00014274|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at sc0000185:16549..17470+ (Clytia hemisphaerica)
AAGGGGTCCTGTTCTATCATGGTTTCGAAGTTATCTTGCAAACAGAAAAC
AAAGCGTCTACTGCAACGACGCTAATTCAACACCCTTACCCATGTTTCAC
GGGGTCCCCCAAGGTTCAGTGCTTGGTCCCCTTCTTTTCTTGATTTATAT
TAATGACCTGCCATTGAATTCATCATTCTCGCAGACGTTTTTTGCTGACG
ATACGTGTCTTTTTATGAGTCATAAAAACCCTGAAGCTCTTCAAAATCTT
ATTAATGTTGAGGTTGGCAAGATTTCAGACTGGCTAGGAGCTAATCAACT
TACTATAAATATATCTAAATCCTACTATATGATTTTCAGTGAGCacaaac
aaactaatttcaaCATTTCTATTTCAGGTCAGACTCTGAACCATGTCAAT
GAAGCTAAATACCTTGGAGTAATCATTGATCATAAACTGAGCTGGAGAGA
ACATCTCAAGAGACTGCACACAAGAATTAAGCAGAATATAGGTATTCTTC
ACAAAGTTGGCTGGTTTCTTCCTANGAGAGAACATCTCAAGAGACTGCAC
ACAAGAGTTAAGCAGAATATAGGTATTCTACACAAAGGCTGGTTTCTTCC
TAGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAACTCACATCTGA
CATACGGTATAACTTCATGGGGTTCCCCTGTAACCAATGGCTTGGGTAAA
ATTAATGAATCCATACTTAAATGTAAAAATTATATTAACAAGGTCAGTCC
TCCTATGGAGGATGAGACCATCTTTAACCCACTTAATATAGATCAACTAT
ATGAGCTTGAATCATGTAAACTCATACATAAATTCCTAAACAACCATCTT
CCATCTTCATTGATTTGTCTCTTCCAAAGATCTCAAACTGGCAATATGAT
CGCTaggaaaaattctaaaaac Coding sequence (CDS) from alignment at sc0000185:16549..17470+ >TCONS_00014274 ID=TCONS_00014274|Name=TCONS_00014274|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000185:16549..17470+ (Clytia hemisphaerica)
AGGGGTCCTGTTCTATCATGGTTTCGAAGTTATCTTGCAAACAGAAAACA
AAGCGTCTACTGCAACGACGCTAATTCAACACCCTTACCCATGTTTCACG
GGGTCCCCCAAGGTTCAGTGCTTGGTCCCCTTCTTTTCTTGATTTATATT
AATGACCTGCCATTGAATTCATCATTCTCGCAGACGTTTTTTGCTGACGA
TACGTGTCTTTTTATGAGTCATAAAAACCCTGAAGCTCTTCAAAATCTTA
TTAATGTTGAGGTTGGCAAGATTTCAGACTGGCTAGGAGCTAATCAACTT
ACTATAAATATATCTAAATCCTACTATATGATTTTCAGTGAGCacaaaca
aactaatttcaaCATTTCTATTTCAGGTCAGACTCTGAACCATGTCAATG
AAGCTAAATACCTTGGAGTAATCATTGATCATAAACTGAGCTGGAGAGAA
CATCTCAAGAGACTGCACACAAGAATTAAGCAGAATATAGGTATTCTTCA
CAAAGTTGGCTGGTTTCTTCCTANGAGAGAACATCTCAAGAGACTGCACA
CAAGAGTTAAGCAGAATATAGGTATTCTACACAAAGGCTGGTTTCTTCCT
AGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAACTCACATCTGAC
ATACGGTATAACTTCATGGGGTTCCCCTGTAACCAATGGCTTGGGTAAAA
TTAATGAATCCATACTTAAATGTAAAAATTATATTAACAAGGTCAGTCCT
CCTATGGAGGATGAGACCATCTTTAACCCACTTAATATAGATCAACTATA
TGAGCTTGAATCATGTAAACTCATACATAAATTCCTAAACAACCATCTTC
CATCTTCATTGATTTGTCTCTTCCAAAGATCTCAAACTGGCAATATGATC
GCTaggaaaaattctaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014274-exon-sc0000185-1491911889:16549..17470 | TCONS_00014274-exon-sc0000185-1491911889:16549..17470 | Clytia hemisphaerica | exon |
| TCONS_00014274-exon-sc0000185-1510915933:16549..17470 | TCONS_00014274-exon-sc0000185-1510915933:16549..17470 | Clytia hemisphaerica | exon |
| TCONS_00014274-exon-sc0000185-1575043694:16549..17470 | TCONS_00014274-exon-sc0000185-1575043694:16549..17470 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000185 | supercontig | sc0000185:16549..17470 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
