TCONS_00014257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014257
Unique NameTCONS_00014257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014257 ID=TCONS_00014257|Name=TCONS_00014257|organism=Clytia hemisphaerica|type=transcript|length=299bp
GTTCGATATCTTTTCAGCGTACTACTTTTTTCATTAAGGAAATTTGGCTG
GGCAGTACTCCGGCAGTACTGAAAATTTTAATACTATTATTCACTGATAA
TGACAATAATTTTAGCAttaaaatatcttgaaaataatttatttttgcgt
aaaaaattttattttataaattttataggTTCTTAGGATTTggataaatt
gataaaataGAATTTAAAAGCTTTTTACAATCAAATATTTACATAAATGC
AAGATTCATTTTAACCAGAATGTAGAGATCCACATGTGCATATGTCACA
Run BLAST on NCBI

transcript from alignment at sc0000183:86190..86488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014257 ID=TCONS_00014257|Name=TCONS_00014257|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0000183:86190..86488 (Clytia hemisphaerica)
TGTGACATATGCACATGTGGATCTCTACATTCTGGTTAAAATGAATCTTG
CATTTATGTAAATATTTGATTGTAAAAAGCTTTTAAATTCtattttatca
atttatccAAATCCTAAGAAcctataaaatttataaaataaaatttttta
cgcaaaaataaattattttcaagatattttaaTGCTAAAATTATTGTCAT
TATCAGTGAATAATAGTATTAAAATTTTCAGTACTGCCGGAGTACTGCCC
AGCCAAATTTCCTTAATGAAAAAAGTAGTACGCTGAAAAGATATCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007970XLOC_007970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014257-exon-sc0000183-1491911889:86190..86488TCONS_00014257-exon-sc0000183-1491911889:86190..86488Clytia hemisphaericaexon
TCONS_00014257-exon-sc0000183-1510915933:86190..86488TCONS_00014257-exon-sc0000183-1510915933:86190..86488Clytia hemisphaericaexon
TCONS_00014257-exon-sc0000183-1575043694:86190..86488TCONS_00014257-exon-sc0000183-1575043694:86190..86488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:86190..86488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.787171	0.767615	2.67382	1.74395	0	0	1.51805	0	0.331667	1.23247	3.19004	1.0485	0.785284	1.08737	0.446982	1.43904	1.18185	1.5142	0.41839	0.437815	1.9027	0.556843	0.451277	3.28221	0	0.377138	2.69842	3.45579	1.31055	1.78032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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