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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014254 ID=TCONS_00014254|Name=TCONS_00014254|organism=Clytia hemisphaerica|type=transcript|length=3789bp
CTTGCTTTGGGCGGTTTACCACGGGTACTTTTCGTCGTTTTGATGACAGT
AGACGAACTGGTGGTAAGTGTTTCGGCACTTTTCGATGCTTCAACTTTTG
TTCTGCCAGTGCTTCGTCTACGCGTTGTCCGGCTACTGGAGAAAGATTCC
TCTAGAATTGACTCTTCGGCTCTTGCTATGACTTTTGTCAGCGTCTCTTC
TTCTTGATGTTTGAATCCGATTTCTTCGTCACTTGCGTTTACTTCTTCCA
ANACTTTTGTCAGCGTCTCTTCTTCTTGATGTTTGAATCCGATTTCTTCG
TCACTGGCGTTTACTTCTTCCAAGATGGGTGGTATACAAAGGGCGGGTTC
TGAAACAGTGGCGGTGACTCCCCTACGAGATGGCGATCTCTTGGGTGTAG
ATTTGGTCGTTGTCCTTTTTGCGGGTGTTCGACGTGGTCGACTCGTTGCT
ATGGTTTCTTCAGTATTCTCTTCTGTGATTGGCGAAATGACCAACATCGG
TTCAGAGGCGGATGCATTGACACTTCTACGGGAAGGCGAACGTTTTGGAG
TTGTTTTGGCCGTTGTCGAGGTTGCAATCTTTTTAAGAGGTGTTGTGCGG
GTTGTGGGTTTAGAAGTTTCAACTTCTATTAACTGCTCTGTAGAAGCTTG
AATGGTTTTTCGACGTGAAGATCTTCGCGTTGACGTCGTCAAAGCATCCT
CTGTGATTTCTCCTGTAGATTCAGAATGCATTGGTTCTACTTCTACTGAT
TCAGTTTTCTTTCTAGAAGTTCTTTTCTTGGAGGCCATCAATACATCTTC
GTAAGTGGTTTCTGTTGATTCCAAATCCATGCTGTCAATCTGAGTTTTCT
TTTTGGacgattttctttttaaagtagGTTCGGCAACTTCACTAACAGGC
TCAGTGGTCTTTACATCTGAACTCACATCATTAGTTTCAGTATTCTTTTT
AGACGATCTTCGTGTAGGCGTTTTTGAAACCAATTCTGCAAATTCACCGG
TCGATTCGGATGCATCGGGTTCTGAAGGTGACCTCTTTGCCTCTGTTCTC
TTTCTGGAAGATCTTCGTGCAGGGCTTTTGGAAACGGAATCTGAAATTTC
GTTAGTGCTCTTCGTTTCTTCCGTAAGTGTTTTAGCTTCTGTCTTCTTTT
TCGACGCTTTTCGTTTGGACGTAGTAGCCATTGGGACGTCTTCAGATATT
TCACTTGTCAGCTCAGTTGCGAGGCTCTCCAAAGGTACACTAGCCTCCAA
ATTCTTTCTGGATGCTGACCGACGTGTAGTCGGTACTTCAANCTCAGTTG
CGAGGCTCTCCAAAGGTACACTAGCCTCCAAATTCTTTCTGGATGCTGAC
CGACGTGTAGTTGGTACTTCAACAACTAAGGCTCGATTTACATTTTCTAA
AGCATTGTACTGTTCAGTTTCTTCTTGAATTTCGTTTAAAATACTCTCTT
CTAGTTTGGTGTCATCCGTTTTCTTCTTGGATGCACTTCGGGTAGTTATC
CGTCTCGGAGGTTGTACGCGGACCGGTGTTTTTGGTTGTCGTTGTCTTTT
ACCTCTAACGCTTGTAGCCATGGAAACATCAAGATTCTCATTCGCATCCG
TCTCCGTAACACTACCATTATCCGTTTCCATAGCAGCTGGTTCATCTGCA
TCTTTTGCTTCTCTcgtttccataatggcagacgtAACATTTTTCTCGCT
GAAATGCTCAGGACTGTTTGAGTCACTGACAGAAAAAATACTAACGCTCT
CACTAACGTCCGTGTAAGAGGAATCGTTACTGTAATTCTCAGTCAGTAAT
CGTTCAAAGAGTAAAGGTGCTTTGTTCATGTTTTCTTCACTTCGCGATGG
AGTCGTCGTACCTTGTTCATCCTCTTTAACAGGTTCATCTTCAATAGATC
GTACTGATGGTAAGGATTGCACCATTTCGAAGCTTTCTTTTGGCGAGACG
TCCTTATCCTCTACTGCTGGTTCGGTTGTCGTACCATTCGTTGACTCAGG
GTCTAGAGTTACATCAATATCACTCATCATTTGATCCTCAGTAATGAGAG
ACTCTTCACTGGAGATAGCAATCACCTGATGTGAGTCCACCCTGGATTCT
GTATCGGACCCAACATATCCATCCGTCTCTTGAATCATTTCATATTCAGC
ACTTTCCGTTTGTCGAGGAAGATCATCGTCTACGTTATCAACGATCGCGA
AATCTTCATCTTTTTGTTGTGGAGTGGGCTCAGATATCAAGTCCTCTCCT
TCAATATCGGTGTTGAAAATGTAGGTCTGTTGGCCATCCTCATAATTTTC
GTCCTGTTGGTCAATATCCAAGTCTGCATACAGTTTTACATCTTCGTCGA
TCATGACATCCTCGTAGATATCTATTTCTTCTCTTCCCCGTAAAGGTGAA
TTCCCTTCCATGTTTTCACTTTCAACATCCTCATAAAGCGAACTAGCATT
TGTTTGATTTACACTGAGATTCGAAGTTTCATTTCTGAGACTTTGATCCG
GTGCATCTTCGTATATGCTGCGATCGACTTCAACTCCGGACACATCTTCG
TCAACTCTTTGTGGAGATTCCTGGAGCATAACAACTGATTGCTCAACTTC
AGTGTCATCATCAATCATCTCAATATCTTCATTTGAAGTCACTTGCTGAT
CATCATCCTCCGTTAAAAGTGGGGGTTGTACGAAATCACTTTCAGCGTTT
TTATCATCTTGCCCTTTTCCAACAACCGTTTGTATATCGTTCGACTCGTC
AACTTCTGCACCGTCTTGCGCTAACACGAAATCATCAGGAAGATCCTCCT
CCTCGTCGCTATCATCGGAAAGATTTTCTTCATCAATTAGTTCACCGGAG
TCTTCAAGTTCCTCTTCGACCAGTTCACCTGAATCTTCGATTTCTTCTCC
TTTCAAATCTCCATTCTCCGAAAATTcgtcttcttcatcttcttcatcat
catccAAGTATTCACTTTCTTCCTCCTCAGACTCAGGCTCCTCACACTCA
GGCTCCTCACACTCGTTCCCAATTCCTTCTCCTTCATTCGCTTCTTCGTC
AGACGAATCGTCCAACATAACAACCGAGATGTTTTTTTTCGTTTCAGGTG
GAGACAGATTTCTTTTCTCATGCTCCAAATACTGCAGTGGTGATTGGAAA
TCATCAAAACTTTCATAATTTGCTGTGTTCTCTTCATCTCTCGTTTTGTC
TGATGCTGAAGGCGTGTTAAGATGATGCGAAATTTCAGGAGGCTGTTTGA
ACGTCACCGGTGAACGAGAGTGCTCTTCGAAGGTGACTCGTGGTGAAGGA
GTGCGTTCTTTGAGCAACACTGGAGAATGCGAGCCAGATCCTTGATCCAT
TGAAATCGGAGAAGGAGTTTGTTCTTTAACCAAGACAGGTGAGGTAGAGC
CATCCCTGGATTGTGACGTTTCACGCGCTTCAAACAAAGCTGATACCCTA
TCATTGGATGGATGGGCAGTGTTTTGAGACTCGATATCGGTGCGACTTGA
AGGATGTGGTGATGCTTGTTGCAATAGAATGGCTTCGCGAACANGTTAAG
AGACTCGATATCGGTGCGACTTGAAGGATGTGGTGATGCTTGTtgcaata
gaatggcttcacgAACTATGGACGTTGAAGAGGTGATTGGAGATGATTCT
TCCATCGAATTGTCTAGATCGTCATCGTCTTGTGAGAGCTCAAGTAGAAT
ACTTTCCATAGGTGTCTTATTCAAGCCATCATCATCACCATCACCGTCAT
CGACAGCTTCAATCATGTCTTGATCATCTGTTACCTCGT Run BLAST on NCBI transcript from alignment at sc0000183:431142..435056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014254 ID=TCONS_00014254|Name=TCONS_00014254|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at sc0000183:431142..435056- (Clytia hemisphaerica)
CTTGCTTTGGGCGGTTTACCACGGGTACTTTTCGTCGTTTTGATGACAGT
AGACGAACTGGTGGTAAGTGTTTCGGCACTTTTCGATGCTTCAACTTTTG
TTCTGCCAGTGCTTCGTCTACGCGTTGTCCGGCTACTGGAGAAAGATTCC
TCTAGAATTGACTCTTCGGCTCTTGCTATGACTTTTGTCAGCGTCTCTTC
TTCTTGATGTTTGAATCCGATTTCTTCGTCACTTGCGTTTACTTCTTCCA
ANACTTTTGTCAGCGTCTCTTCTTCTTGATGTTTGAATCCGATTTCTTCG
TCACTGGCGTTTACTTCTTCCAAGATGGGTGGTATACAAAGGGCGGGTTC
TGAAACAGTGGCGGTGACTCCCCTACGAGATGGCGATCTCTTGGGTGTAG
ATTTGGTCGTTGTCCTTTTTGCGGGTGTTCGACGTGGTCGACTCGTTGCT
ATGGTTTCTTCAGTATTCTCTTCTGTGATTGGCGAAATGACCAACATCGG
TTCAGAGATGGATGCATTGACGNTAGATTTGGTCGTTGTCTTTTTTGAGG
GTGTTCGACGTGGTCGACTCCTTGCTATGGTTTCTTCAGTATTCTCTTCT
GTGATTGGTGAAATGACCAACATCGGTTCAGAGGCGGATGCATTGACACT
TCTACGGGAAGGCGAACGTTTTGGAGTTGTTTTGGCCGTTGTCGAGGTTG
CAATCTTTTTAAGAGGTGTTGTGCGGGTTGTGGGTTTAGAAGTTTCAACT
TCTATTAACTGCTCTGTAGAAGCTTGAATGGTTTTTCGACGTGAAGATCT
TCGCGTTGACGTCGTCAAAGCATCCTCTGTGATTTCTCCTGTAGATTCAG
AATGCATTGGTTCTACTTCTACTGATTCAGTTTTCTTTCTAGAAGTTCTT
TTCTTGGAGGCCATCAATACATCTTCGTAAGTGGTTTCTGTTGATTCCAA
ATCCATGCTGTCAATCTGAGTTTTCTTTTTGGACGATTTTCTTTTTAAAG
TAGGTTCGGCAACTTCACTAACAGGCTCAGTGGTCTTTACATCTGAACTC
ACATCATTAGTTTCAGTATTCTTTTTAGACGATCTTCGTGTAGGCGTTTT
TGAAACCAATTCTGCAAATTCACCGGTCGATTCGGATGCATCGGGTTCTG
AAGGTGACCTCTTTGCCTCTGTTCTCTTTCTGGAAGATCTTCGTGCAGGG
CTTTTGGAAACGGAATCTGAAATTTCGTTAGTGCTCTTCGTTTCTTCCGT
AAGTGTTTTAGCTTCTGTCTTCTTTTTCGACGCTTTTCGTTTGGACGTAG
TAGCCATTGGGACGTCTTCAGATATTTCACTTGTCAGCTCAGTTGCGAGG
CTCTCCAAAGGTACACTAGCCTCCAAATTCTTTCTGGATGCTGACCGACG
TGTAGTCGGTACTTCAANCTCAGTTGCGAGGCTCTCCAAAGGTACACTAG
CCTCCAAATTCTTTCTGGATGCTGACCGACGTGTAGTTGGTACTTCAACA
ACTAAGGCTCGATTTACATTTTCTAAAGCATTGTACTGTTCAGTTTCTTC
TTGAATTTCGTTTAAAATACTCTCTTCTAGTTTGGTGTCATCCGTTTTCT
TCTTGGATGCACTTCGGGTAGTTATCCGTCTCGGAGGTTGTACGCGGACC
GGTGTTTTTGGTTGTCGTTGTCTTTTACCTCTAACGCTTGTAGCCATGGA
AACATCAAGATTCTCATTCGCATCCGTCTCCGTAACACTACCATTATCCG
TTTCCATAGCAGCTGGTTCATCTGCATCTTTTGCTTCTCTCGTTTCCATA
ATGGCAGACGTAACATTTTTCTCGCTGAAATGCTCAGGACTGTTTGAGTC
ACTGACAGAAAAAATACTAACGCTCTCACTAACGTCCGTGTAAGAGGAAT
CGTTACTGTAATTCTCAGTCAGTAATCGTTCAAAGAGTAAAGGTGCTTTG
TTCATGTTTTCTTCACTTCGCGATGGAGTCGTCGTACCTTGTTCATCCTC
TTTAACAGGTTCATCTTCAATAGATCGTACTGATGGTAAGGATTGCACCA
TTTCGAAGCTTTCTTTTGGCGAGACGTCCTTATCCTCTACTGCTGGTTCG
GTTGTCGTACCATTCGTTGACTCAGGGTCTAGAGTTACATCAATATCACT
CATCATTTGATCCTCAGTAATGAGAGACTCTTCACTGGAGATAGCAATCA
CCTGATGTGAGTCCACCCTGGATTCTGTATCGGACCCAACATATCCATCC
GTCTCTTGAATCATTTCATATTCAGCACTTTCCGTTTGTCGAGGAAGATC
ATCGTCTACGTTATCAACGATCGCGAAATCTTCATCTTTTTGTTGTGGAG
TGGGCTCAGATATCAAGTCCTCTCCTTCAATATCGGTGTTGAAAATGTAG
GTCTGTTGGCCATCCTCATAATTTTCGTCCTGTTGGTCAATATCCAAGTC
TGCATACAGTTTTACATCTTCGTCGATCATGACATCCTCGTAGATATCTA
TTTCTTCTCTTCCCCGTAAAGGTGAATTCCCTTCCATGTTTTCACTTTCA
ACATCCTCATAAAGCGAACTAGCATTTGTTTGATTTACACTGAGATTCGA
AGTTTCATTTCTGAGACTTTGATCCGGTGCATCTTCGTATATGCTGCGAT
CGACTTCAACTCCGGACACATCTTCGTCAACTCTTTGTGGAGATTCCTGG
AGCATAACAACTGATTGCTCAACTTCAGTGTCATCATCAATCATCTCAAT
ATCTTCATTTGAAGTCACTTGCTGATCATCATCCTCCGTTAAAAGTGGGG
GTTGTACGAAATCACTTTCAGCGTTTTTATCATCTTGCCCTTTTCCAACA
ACCGTTTGTATATCGTTCGACTCGTCAACTTCTGCACCGTCTTGCGCTAA
CACGAAATCATCAGGAAGATCCTCCTCCTCGTCGCTATCATCGGAAAGAT
TTTCTTCATCAATTAGTTCACCGGAGTCTTCAAGTTCCTCTTCGACCAGT
TCACCTGAATCTTCGATTTCTTCTCCTTTCAAATCTCCATTCTCCGAAAA
TTCGTCTTCTTCATCTTCTTCATCATCATCCAAGTATTCACTTTCTTCCT
CCTCAGACTCAGGCTCCTCACACTCAGGCTCCTCACACTCGTTCCCAATT
CCTTCTCCTTCATTCGCTTCTTCGTCAGACGAATCGTCCAACATAACAAC
CGAGATGTTTTTTTTCGTTTCAGGTGGAGACAGATTTCTTTTCTCATGCT
CCAAATACTGCAGTGGTGATTGGAAATCATCAAAACTTTCATAATTTGCT
GTGTTCTCTTCATCTCTCGTTTTGTCTGATGCTGAAGGCGTGTTAAGATG
ATGCGAAATTTCAGGAGGCTGTTTGAACGTCACCGGTGAACGAGAGTGCT
CTTCGAAGGTGACTCGTGGTGAAGGAGTGCGTTCTTTGAGCAACACTGGA
GAATGCGAGCCAGATCCTTGATCCATTGAAATCGGAGAAGGAGTTTGTTC
TTTAACCAAGACAGGTGAGGTAGAGCCATCCCTGGATTGTGACGTTTCAC
GCGCTTCAAACAAAGCTGATACCCTATCATTGGATGGATGGGCAGTGTTT
TGAGACTCGATATCGGTGCGACTTGAAGGATGTGGTGATGCTTGTTGCAA
TAGAATGGCTTCGCGAACANGTTAAGAGACTCGATATCGGTGCGACTTGA
AGGATGTGGTGATGCTTGTTGCAATAGAATGGCTTCACGAACTATGGACG
TTGAAGAGGTGATTGGAGATGATTCTTCCATCGAATTGTCTAGATCGTCA
TCGTCTTGTGAGAGCTCAAGTAGAATACTTTCCATAGGTGTCTTATTCAA
GCCATCATCATCACCATCACCGTCATCGACAGCTTCAATCATGTCTTGAT
CATCTGTTACCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014254-exon-sc0000183-1575043694:434562..435056 | TCONS_00014254-exon-sc0000183-1575043694:434562..435056 | Clytia hemisphaerica | exon |
| TCONS_00014254-exon-sc0000183-1575043694:431142..434435 | TCONS_00014254-exon-sc0000183-1575043694:431142..434435 | Clytia hemisphaerica | exon |
| TCONS_00014254-exon-sc0000183-1510915933:434562..435056 | TCONS_00014254-exon-sc0000183-1510915933:434562..435056 | Clytia hemisphaerica | exon |
| TCONS_00014254-exon-sc0000183-1510915933:431142..434435 | TCONS_00014254-exon-sc0000183-1510915933:431142..434435 | Clytia hemisphaerica | exon |
| TCONS_00014254-exon-sc0000183-1491911889:434562..435056 | TCONS_00014254-exon-sc0000183-1491911889:434562..435056 | Clytia hemisphaerica | exon |
| TCONS_00014254-exon-sc0000183-1491911889:431142..434435 | TCONS_00014254-exon-sc0000183-1491911889:431142..434435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:431142..435056 - |
Blast
The following BLAST results are available for this feature:
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