|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014173 ID=TCONS_00014173|Name=TCONS_00014173|organism=Clytia hemisphaerica|type=transcript|length=665bp
ctccaacgataccaaatttatgaagattgaagaattccttcaaaagttat
aggtaaaagaaaaaagagtgcacacttatcgtgaatagactttaattgat
tatttatttGATGTGCTCANATTTGGGTGAAAAATCAGAAGTACTTATGG
AAGGCCAACTTCCTTTAATGACGAATAAAAAATGTGCAGTCAAGAATCGA
TTCAAAGGAAAACCACTGATCAACCATAATATGATGTGTGGTGGCTCAGA
GAGGAACATCCTGAGCACGTGTCAGGGTGATAGTGGTGGCCCATATGTCT
GTATGAACGCATCCAAACGATTTGTATTGCAAGGAGTTGTCAGTTTTGGT
CATGACGAATGTAAAACGTCCAAATTATTCCCAACTTTTACACGAGTCAG
TCAATATGTCGATTGGATTTATAAAACAATGGACGAAAAGGGTGACGATG
AAAATGATTTGGGCAATGTCAATTGATATACGCTATGGAGAGAATAGCAC
TAACTATATCACATCTATTGTTTCGAACATGTCCAACATGTCAAGAAATA
ATTGGCCTGGTAAATTGGAACAAATTAGAGGAATATACATAcattttttg
agcaaaggaTGAACTTCGAGAACTTTTAAAAACGTGCATATTATGGTATT
TTCTGTATACTCAAT Run BLAST on NCBI protein sequence of TCONS_00014173-protein >TCONS_00014173-protein ID=TCONS_00014173-protein|Name=TCONS_00014173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MCSXLGEKSEVLMEGQLPLMTNKKCAVKNRFKGKPLINHNMMCGGSERNI
LSTCQGDSGGPYVCMNASKRFVLQGVVSFGHDECKTSKLFPTFTRVSQYV
DWIYKTMDEKGDDENDLGNVN Run BLAST on NCBI transcript from alignment at sc0000183:26311..27362+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014173 ID=TCONS_00014173|Name=TCONS_00014173|organism=Clytia hemisphaerica|type=transcript|length=1052bp|location=Sequence derived from alignment at sc0000183:26311..27362+ (Clytia hemisphaerica)
ctccaacgataccaaatttatgaagattgaagaattccttcaaaagttat
aggtaaaagaaaaaagagtgcacacttatcgtgaatagactttaattgat
tatttatttGATGTGCTCANATTTGGGTGAAAAATCAGAAGTACTTATGG
AAGGCCAACTTCCTTTAATGACGAATAAAAAATGTGCAGTCAAGAATCGA
TTCAAAGGAAAACCACTGATCAACCATAATATGATGTGTGGTGGCTCAGA
GAGGAACATCCTGAGCACGTGTCAGGGTGATAGTGGTGGCCCATATGTCT
GTATGAACGCATCCAAACGATTTGTAAGTCATGTTAGAtccaatttgaga
aatttatcgATTCTTTTGGGGCctcttggaaaaatttttttgtaactGTT
ATTCTTTTTATGGGAATAATTGCTCTCTATAAAATTAGTACCTTCTGAAA
CTGCTGTtacttttaaaagtaaaaaaataatctACATTTTTCTATCTTGC
AGATTCAAGCTAAAATTCTATTGACATTCATTTAAAATAAAGTTTCGAGA
TTTAAGATTCGAGATCTATTGTTCAAAAGTCATTTCGATCGACCCTTAAA
NTAAAATTCTATTGACATTCAATTAAAATAATGTTTCGAGATTTAAGATT
CGAGATCTATTGTTCAAAAGTCATTTCGATCGACCGTTAAGACTCCTTTC
TTTATTCTAGGTATTGCAAGGAGTTGTCAGTTTTGGTCATGACGAATGTA
AAACGTCCAAATTATTCCCAACTTTTACACGAGTCAGTCAATATGTCGAT
TGGATTTATAAAACAATGGACGAAAAGGGTGACGATGAAAATGATTTGGG
CAATGTCAATTGATATACGCTATGGAGAGAATAGCACTAACTATATCACA
TCTATTGTTTCGAACATGTCCAACATGTCAAGAAATAATTGGCCTGGTAA
ATTGGAACAAATTAGAGGAATATACATAcattttttgagcaaaggaTGAA
CTTCGAGAACTTTTAAAAACGTGCATATTATGGTATTTTCTGTATACTCA
AT Coding sequence (CDS) from alignment at sc0000183:26311..27362+ >TCONS_00014173 ID=TCONS_00014173|Name=TCONS_00014173|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000183:26311..27362+ (Clytia hemisphaerica)
ATGTGCTCANATTTGGGTGAAAAATCAGAAGTACTTATGGAAGGCCAACT
TCCTTTAATGACGAATAAAAAATGTGCAGTCAAGAATCGATTCAAAGGAA
AACCACTGATCAACCATAATATGATGTGTGGTGGCTCAGAGAGGAACATC
CTGAGCACGTGTCAGGGTGATAGTGGTGGCCCATATGTCTGTATGAACGC
ATCCAAACGATTTGTATTGCAAGGAGTTGTCAGTTTTGGTCATGACGAAT
GTAAAACGTCCAAATTATTCCCAACTTTTACACGAGTCAGTCAATATGTC
GATTGGATTTATAAAACAATGGACGAAAAGGGTGACGATGAAAATGATTT
GGGCAATGTCAATTGAATGTGCTCANATTTGGGTGAAAAATCAGAAGTAC
TTATGGAAGGCCAACTTCCTTTAATGACGAATAAAAAATGTGCAGTCAAG
AATCGATTCAAAGGAAAACCACTGATCAACCATAATATGATGTGTGGTGG
CTCAGAGAGGAACATCCTGAGCACGTGTCAGGGTGATAGTGGTGGCCCAT
ATGTCTGTATGAACGCATCCAAACGATTTGTATTGCAAGGAGTTGTCAGT
TTTGGTCATGACGAATGTAAAACGTCCAAATTATTCCCAACTTTTACACG
AGTCAGTCAATATGTCGATTGGATTTATAAAACAATGGACGAAAAGGGTG
ACGATGAAAATGATTTGGGCAATGTCAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014173-exon-sc0000183-1491911889:26311..26633 | TCONS_00014173-exon-sc0000183-1491911889:26311..26633 | Clytia hemisphaerica | exon |
| TCONS_00014173-exon-sc0000183-1510915933:26311..26633 | TCONS_00014173-exon-sc0000183-1510915933:26311..26633 | Clytia hemisphaerica | exon |
| TCONS_00014173-exon-sc0000183-1575043694:26311..26633 | TCONS_00014173-exon-sc0000183-1575043694:26311..26633 | Clytia hemisphaerica | exon |
| TCONS_00014173-exon-sc0000183-1491911889:27021..27362 | TCONS_00014173-exon-sc0000183-1491911889:27021..27362 | Clytia hemisphaerica | exon |
| TCONS_00014173-exon-sc0000183-1510915933:27021..27362 | TCONS_00014173-exon-sc0000183-1510915933:27021..27362 | Clytia hemisphaerica | exon |
| TCONS_00014173-exon-sc0000183-1575043694:27021..27362 | TCONS_00014173-exon-sc0000183-1575043694:27021..27362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:26311..27362 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
|
