TCONS_00014171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014171
Unique NameTCONS_00014171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014171 ID=TCONS_00014171|Name=TCONS_00014171|organism=Clytia hemisphaerica|type=transcript|length=614bp
AAACCATTGAAGCAAAATGTAATTGTCGATAGAAGTAAAACAGACCtata
aaatatgatattttgTGGTGTAACTTAAAAATCTTGTCGTCAAGACACAA
ACCGAAAACCCTCTACGCTTTGTCATAGTAGGCGTAGAGCTTTGCATAAA
AGAACTGTCCATATCAATAATGGGTTGGTTACATTTGGTGACCCTATTGG
TTCTTGGGTTTGCATGCATTCAATGCCAGGAAACTTGCGAAGACAAGGAC
GATCAATGTCGAAGGTGGTACAGTTCTTGCAGTACCAATAAATATGTCAA
GATTAATTGTAAGAAGACGTGCGGTACATGCCCAAAGAACGAAGATGCTG
CTGAAGAAACAGATTCAGAATGCAAAGACACATACGCCAAATGCTACATC
TGGCAAAACCAGAATTGTAAAAAACGACCACTTCATATCTATTTGCGAAC
ACATTGTAAAAAATCCTGTGGATTGTGCAAATCACCTAgCTCCTTCTCGT
CATGTATAGACAGTAACAAGAATTGTGGGCGTTGGGCGAAGGGCGGATAT
TGTGAGCGAAATAAAGGCTTCATGTACACATACTGTAAGAAATCGTGCAG
ACAATGCAAAGCCG
Run BLAST on NCBI

protein sequence of TCONS_00014171-protein

>TCONS_00014171-protein ID=TCONS_00014171-protein|Name=TCONS_00014171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MGWLHLVTLLVLGFACIQCQETCEDKDDQCRRWYSSCSTNKYVKINCKKT
CGTCPKNEDAAEETDSECKDTYAKCYIWQNQNCKKRPLHIYLRTHCKKSC
GLCKSPSSFSSCIDSNKNCGRWAKGGYCERNKGFMYTYCKKSCRQCKA
Run BLAST on NCBI

transcript from alignment at sc0000183:18731..22840+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014171 ID=TCONS_00014171|Name=TCONS_00014171|organism=Clytia hemisphaerica|type=transcript|length=4110bp|location=Sequence derived from alignment at sc0000183:18731..22840+ (Clytia hemisphaerica)
AAACCATTGAAGCAAAATGTAATTGTCGATAGAAGTAAAACAGACCtata
aaatatgatattttgTGGTGTAACTTAAAAATCTTGTCGTCAAGACACAA
ACCGAAAACCCTCTACGCTTTGTCATAGTAGGCGTAGAGCTTTGCATAAA
AGAACTGTCCATATCAATAATGGGTTGGTTACATTTGGTGACCCTATTGG
TTCTTGGGTTTGCATGCATTCAATGCCAGGAAAGTAAGTGTTTAGTAAGT
GCTTCATAATCTACTATTTAGCTGGTAGTTGATAATATACTTGTCATCTC
TTTGCTTGCCAAACTTTTAGCTGCCTTATGCTATATACTCTATCAGGCTT
TTGAACACGAGACCATTAAATGTCCATGTTCAGTTTCCCAGGGTTTTCTA
AATACTTTGTGAAATTTAACGGGGAAAAGACCATTGTAAGGGTATAATAA
TCTAAATAGGAGAAAAACCACACAGGATCGACCAATTTTGTTGTTATACT
TTTACCTTCTCCATTTCAAGCCATTTCTTTCCTTGAAATAcatcattgta
caaaaaaatatcaaaacttggAAATGTACGTTTGCTTTTTGAATCAGAAA
CATTTTAGTTACATGAAACCCTTCAAAATTCGTTTTATAGCTTGCGAAGA
CAAGGACGATCAATGTCGAAGGTGGTACAGTTCTTGCAGTACCAATAAAT
ATGTCAAGATTAATTGTAAGAAGACGTGCGGTACATGCCCAAAGAACGAA
GGTACATTTCTTACACAACATTTTTTGAAGACGATTTGGAAGTTCTCCAA
ATTGTCATTTCAGTTTAGATCTTTGCCGTTGTCGATTGTAcgattttgta
taaatttttGCATAAATTGATCCTTTAAAAACATATCCTCGTAGATCCTC
GAACCAAGGAATTATAAGAGACACTGGATAAATGACttataaaacggtgg
agagcgaccattgtatttcctttgttttagaaaacaattgatgttctagc
tttgtccgcaaaggacaactgtcatggcggcttgaagatgtctgattttt
aaaaatgtttatcagtcttatttttaaaaagttctctagctctttctttt
tgtacattttcagaaaaaaagtttgaaattaaggctagcattccaagctg
gatacatttgcaaaatctaatgtgagaaaaacatcattagacaagaaatt
cagacaaaatgcttatagacttatagtgacacgaaatttccaattggaat
atctttccaagactgtccccagaagagctgaaattaacatacataagaat
TGAGTGTCTTGggtccactgtggtatgaaaatcctttggaggcacgtggt
ggcaaagtggtttttttgaggttgaagtttgaaaatttccggtgtcaaca
ttaaatttcttatttaactttctatttttttactCCTGGAAAGGACGCTG
TGAGCAGGACGGATATCCCAGAAGTGGTGAGTGATAAGGGAAACCAGTGG
AAACAAGTTTTGGCATTTGTTTATTGGCTAACCACTCCTATACAAATAAT
TTTGAGGATAAAATATTTCCCATATTTGACAATAATTATAATGTATAAGA
TGGCCGCCTGCAACTATGCTCGCAAGCCTtgaagggagggagggaggtaa
aaaaataattttctctgtCTTCACTGTAAGATGAGCTTCTTAGCGAATGG
AAGATCAGTGCTCGAAGTCATAGCTCTAAACCACCTATAGATTCTACCGA
AAGGAGCAAATGCGACGGGGGCGTACTGTGGGCGGACGGCCTACCAAAAC
CACTGTAGCTAGATACGCTAATGGGCGTGACGtcgtaacaaaataaaagt
taaactaaaacttaacctCTTAAATTACCATACACAACGCGTCTTTCCAT
Ctgtctcacagcttgaaacgtcataacgacttataattagcaattaagtg
gaaaAATGTGACTCttacaggaaagttttaagtctcttttgggaattgga
tgagtgattttaatagcttttccattgtattttctgtcatggcatttaag
gaatcgtctttttagagtcattactgaaaaggtgattccctcaagttcaa
cttcgacagatcaaacaatgaaaagcatggaatttctcaaaaactgcagt
cattaagactgaaactttttgccgtagagCTAGGCTATGGCAAGNNtgcc
aacacgctggcatcattaggcatttgacaaaccaaacaattgcgcggaac
aatagaattcaaaagaatactgcaagcaattacaaatgccaggctgatct
aaacgcagccactgctagtctagcaagctagacgactaatttatacatag
taaaattaaagcaaaaagtaatgaatggaacaattttagtttatacaaac
taaaNacgactaatttatacatagtagaaataaagcaaaaagtaatgaat
ggaacaattttagtttatacaaactaaatcccgtattattattagtattg
gtattatcagtattacacgcattataaacgactccagtctacattactgc
ggacatacttagtacacgagaaatcggcacaaatctgttacttgtatatc
cagtgtataataaatccttgctcGAACTTTCGAAAAACTCAAATGAACAA
TATCTCAGATCTCTCGAAAAAACCTTAGGATGATTTGTCTCAATATCTTC
TTGATTCGAAGCCAAAAAGGATAATAGTTCCCATTTTTGATTTCCTACTT
TGAGGTTCCTACTTTGGGGTTCCCACTTAGAGTTCCCACTTCAGGGTTCC
CCCTTTTGGGTTCCGAATTTTGGGTTCCGACTTTTAGGTTCCAACTTTTG
GGTTCCGAATTTTGGGTTCCGACTTTTAGGTTCCAACTTTTGGGTTCCAA
CTTTTGGGTTCCGGGGTTTTCACTTTGGGTTCCCACTTAGAGTTCCCACT
TTCGGGCTCCCACTTTGGGGTTCCCACTTTACAGTTCCCACTTTTGGGTT
CCCACTTTTGGGTTCCCACTTTAGGGGTTCCCACTTTTGGATTCGAACTT
TTGGGTTCCCATCTTGAGGTTCCCACTTAgagttcccactttaggttccc
actaAAAAGTTCACAGAACGGTCGCAGCGGGTGGAAAACACCGATGTTAA
AGCTCAGCTTGGCTGACTAATTATTAGTTCTACTTTGAATTCGAGCTAAA
TACGAAGATAAAGACTGTGACTACTCTGCTTTTCTTAAATACACCTAAAT
TCACAACATCGATTCTTGTCTTTAGATGCTGCTGAAGAAACAGATTCAGA
ATGCAAAGACACATACGCCAAATGCTACATCTGGCAAAACCAGAATTGTA
AAAAACGACCACTTCATATCTATTTGCGAACACATTGTAAAAAATCCTGT
GGATTGTGCAAATCACCTAGTAAGACTGTCCTTTTAGTTGTTGGTGTTTT
GAAAACCTTTGATAAGACTTTCTGTATAATGGGTAGGACCGATTTGGGGA
AATTTCCACTCCCTGGTAGGATATAAAGTAGATTATTGAACAATAGCCAA
CATGTAGAAACATCATTTAATTTAACAATATTCTTTAGAAGGAAAATATT
TATTGTTGGATGCTTATGAGAGAAAAAGGAGCTACTCTGAAACCACAGAT
ATCACATTCCTTCACACACTAGATAGGCTGATTTCCCTCCCTATTTTCTC
GTCGAAATGTGTCCAGTTTTGCTCCAGTTTTGAAGTCATTAGTCCGCTGT
GAGTTTTCTAATTTACCATAGATTTccgaacgttcgaattttaaaacatt
tcgaaatgcGCTGTTGACAACCAGAATTAAAAACAAGATGGTGGACTAAC
CAACTCAGAGACTGAATACGCTTTCTTTTATATGGGAAGCTCGACCCAGT
CGAGTAGTTACAGATCAATGTCTGAAATCTTCCTTAATATCGCGTTGTAA
CTTTATATGATctacaattttcattttcattcaggCTCCTTCTCGTCATG
TATAGACAGTAACAAGAATTGTGGGCGTTGGGCGAAGGGCGGATATTGTG
AGCGAAATAAAGGCTTCATGTACACATACTGTAAGAAATCGTGCAGACAA
TGCAAAGCCG

Coding sequence (CDS) from alignment at sc0000183:18731..22840+

>TCONS_00014171 ID=TCONS_00014171|Name=TCONS_00014171|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000183:18731..22840+ (Clytia hemisphaerica)
ATGGGTTGGTTACATTTGGTGACCCTATTGGTTCTTGGGTTTGCATGCAT
TCAATGCCAGGAAACTTGCGAAGACAAGGACGATCAATGTCGAAGGTGGT
ACAGTTCTTGCAGTACCAATAAATATGTCAAGATTAATTGTAAGAAGACG
TGCGGTACATGCCCAAAGAACGAAGATGCTGCTGAAGAAACAGATTCAGA
ATGCAAAGACACATACGCCAAATGCTACATCTGGCAAAACCAGAATTGTA
AAAAACGACCACTTCATATCTATTTGCGAACACATTGTAAAAAATCCTGT
GGATTGTGCAAATCACCTAgCTCCTTCTCGTCATGTATAGACAGTAACAA
GAATTGTGGGCGTTGGGCGAAGGGCGGATATTGTGAGCGAAATAAAGGCT
TCATGTACACATACTGTAAGAAATCGTGCAGACAATGCAAAGCCATGGGT
TGGTTACATTTGGTGACCCTATTGGTTCTTGGGTTTGCATGCATTCAATG
CCAGGAAACTTGCGAAGACAAGGACGATCAATGTCGAAGGTGGTACAGTT
CTTGCAGTACCAATAAATATGTCAAGATTAATTGTAAGAAGACGTGCGGT
ACATGCCCAAAGAACGAAGATGCTGCTGAAGAAACAGATTCAGAATGCAA
AGACACATACGCCAAATGCTACATCTGGCAAAACCAGAATTGTAAAAAAC
GACCACTTCATATCTATTTGCGAACACATTGTAAAAAATCCTGTGGATTG
TGCAAATCACCTAgCTCCTTCTCGTCATGTATAGACAGTAACAAGAATTG
TGGGCGTTGGGCGAAGGGCGGATATTGTGAGCGAAATAAAGGCTTCATGT
ACACATACTGTAAGAAATCGTGCAGACAATGCAAAGCCATGGGTTGGTTA
CATTTGGTGACCCTATTGGTTCTTGGGTTTGCATGCATTCAATGCCAGGA
AACTTGCGAAGACAAGGACGATCAATGTCGAAGGTGGTACAGTTCTTGCA
GTACCAATAAATATGTCAAGATTAATTGTAAGAAGACGTGCGGTACATGC
CCAAAGAACGAAGATGCTGCTGAAGAAACAGATTCAGAATGCAAAGACAC
ATACGCCAAATGCTACATCTGGCAAAACCAGAATTGTAAAAAACGACCAC
TTCATATCTATTTGCGAACACATTGTAAAAAATCCTGTGGATTGTGCAAA
TCACCTAgCTCCTTCTCGTCATGTATAGACAGTAACAAGAATTGTGGGCG
TTGGGCGAAGGGCGGATATTGTGAGCGAAATAAAGGCTTCATGTACACAT
ACTGTAAGAAATCGTGCAGACAATGCAAAGCCATGGGTTGGTTACATTTG
GTGACCCTATTGGTTCTTGGGTTTGCATGCATTCAATGCCAGGAAACTTG
CGAAGACAAGGACGATCAATGTCGAAGGTGGTACAGTTCTTGCAGTACCA
ATAAATATGTCAAGATTAATTGTAAGAAGACGTGCGGTACATGCCCAAAG
AACGAAGATGCTGCTGAAGAAACAGATTCAGAATGCAAAGACACATACGC
CAAATGCTACATCTGGCAAAACCAGAATTGTAAAAAACGACCACTTCATA
TCTATTTGCGAACACATTGTAAAAAATCCTGTGGATTGTGCAAATCACCT
AgCTCCTTCTCGTCATGTATAGACAGTAACAAGAATTGTGGGCGTTGGGC
GAAGGGCGGATATTGTGAGCGAAATAAAGGCTTCATGTACACATACTGTA
AGAAATCGTGCAGACAATGCAAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007935XLOC_007935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014171-exon-sc0000183-1491911889:18731..18963TCONS_00014171-exon-sc0000183-1491911889:18731..18963Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1510915933:18731..18963TCONS_00014171-exon-sc0000183-1510915933:18731..18963Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1575043694:18731..18963TCONS_00014171-exon-sc0000183-1575043694:18731..18963Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1491911889:19371..19481TCONS_00014171-exon-sc0000183-1491911889:19371..19481Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1510915933:19371..19481TCONS_00014171-exon-sc0000183-1510915933:19371..19481Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1575043694:19371..19481TCONS_00014171-exon-sc0000183-1575043694:19371..19481Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1491911889:22006..22149TCONS_00014171-exon-sc0000183-1491911889:22006..22149Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1510915933:22006..22149TCONS_00014171-exon-sc0000183-1510915933:22006..22149Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1575043694:22006..22149TCONS_00014171-exon-sc0000183-1575043694:22006..22149Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1491911889:22715..22840TCONS_00014171-exon-sc0000183-1491911889:22715..22840Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1510915933:22715..22840TCONS_00014171-exon-sc0000183-1510915933:22715..22840Clytia hemisphaericaexon
TCONS_00014171-exon-sc0000183-1575043694:22715..22840TCONS_00014171-exon-sc0000183-1575043694:22715..22840Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014171-proteinTCONS_00014171-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:18731..22840 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.063573	0.0970365	0	0.09335	0	0.115477	0.0806801	0	0	0.0583407	0	0	0	0	2.01523	3.1116	0	0	4.2115	5.05696	3.78336	8.62255	12.586	8.3074	0.176971	0	0.259476	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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