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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014101 ID=TCONS_00014101|Name=TCONS_00014101|organism=Clytia hemisphaerica|type=transcript|length=649bp
aaaaaaaagaaaaataaatttggaaaatgaagatgaaaaatgcaaGATAG
gctgttttgttttcattgaGTGCCAACGAGACGTTTTACTATGTGGATAG
TTTCGATCCTGCAGCATTCATTGTACTTGGTAACCTTGCCGATGCACCAG
ATGAAGAGCAGAATCAACAATGTGCTGAAATCATCTTTGAAGCAATGAAA
GAAGTTGGAGTACCGCAGAACaggATTGATATTGCATTCAATTTATACCC
AAAAACATGTGTTGCTATGGACGGAAAAGTTTTCTCGAAATGGAAGCGTT
ATCAACAAAGTTGATTAAAATGGCTGGAAAAGAAGCATTGgacccaaaaa
ataagaacttaAAGAAGCTAGCTTTATagtaatttgttttgaaataataC
TGATACGCCGCTAAACATTATGTCAATGGGTAAACCATCATGATTTAGAA
TGTAAAAATTTAGGTTCTTATTTCTTACTAAAATTCTTACTTACaatgta
cactttttttataagaaccagtaaatttttgatgagcCTCGGCTATTCTT
ATTTGTTTtacactttgagcctcaaattgttcttatcctgtttttattta
taggataaaattgagttatttaggcttcatacccaatttttactgcTTT Run BLAST on NCBI transcript from alignment at sc0000181:35398..38655+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014101 ID=TCONS_00014101|Name=TCONS_00014101|organism=Clytia hemisphaerica|type=transcript|length=3258bp|location=Sequence derived from alignment at sc0000181:35398..38655+ (Clytia hemisphaerica)
aaaaaaaagaaaaataaatttggaaaatgaagatgaaaaatgcaaGATAG
GCAAGTTCTGTAGTAGCCTTTTTGTTGACGTTTACAGTCATTTTAATGAG
AGAATTTTAagtgtaatagaccttttcataaattacgtcacaaacatcac
ttgcctcgttttgaaattattgccatggtgaatAACTCCCAACGCATTTT
ATttactttctatttataaaggCAAAAAATGttggtgacgtaatttatga
aaaggtctattgctgATTCTCCTTGATTTATCATTTTGTGAAAGTATATA
AATCTTTATtaacttcaaaattttctaaaaaacttttaacaatttttaca
caggctgttttgttttcattgaGTGCCAACGAGACGTTTTACTATGTGGA
TAGTTTCGATCCTGCAGCATTCATTGTACTTGGTAACCTTGCCGATGCAC
CAGATGAAGAGCAGAATCAACAATGTGCTGAAATCATCTTTGAAGCAATG
AAAGAAGTTGGAGTACCGCAGAACaggtttgaattttttctatTATCCTG
TAAGTGCAACTTGAATTATAGTTACCTTTAGGTTCATGGATCTTTATAta
ccaagctatatccaccgTCTTTGATTGGAGTTCCTAGAAAAGTGGTAGGC
TTAACGGCAGCACTACCCGGAATGTTTTTCACCAACACTGAAAAGTGCTA
CCAATCAGAGTACCACTTCAAAAaatctccgatcaaagattttgcttacC
CGGGATCGAATTTAATTCATTTAATAGACTAGAGtttacttctgactgaa
ctttgctttctgctCTGATAGTTTTCGTTGGCGTATTGAAATAGTTTAGA
GGATATGACCATCTtggaattttttcatttttgttttcaaaaatcatatc
AAACACAGAAACAATCTAAAACTccatcaaaatttatgaaattataATGA
AATCACAAAACTACCTcccaaattaaaaagaaatgctCAATTGATCATAG
ATTccatttgtttttctccaaaaggggactggatctagtggtatGGACAT
GTTCATAAATGATGAGTAAATATCGGCCTTTTGGAGACATTTGAAATGAC
TGTTACAATTTTACtcatgataaaaatgtaacaaaatttcAGAGGTCCTA
GCTGCTGCAGTGGTTAAGCTATATCGCTGAGGTTTCTTAAGATAATCTTG
TATCAAAAAGAGACTTGATTGAATTGGAGCTATGAAGGTTTGTTTCAGAG
TCagtgaaatgataaaaaagtaacaagcaagaaataaataagatgataaa
aatggCCATAACTCATGAAATATGTATTGTGAAGATGTGAAAATGTTACA
CATCACAGGTTATACATACACGGACCTTCATTTTGAGTTTCATGCATCAA
TGGCTGCTCATCTGATAAAAAAGTAACATTTTAAATCCTTGAAATTGATA
CTTTTAAGAGCCCTTGAACCAAACAAAATccaagtaaaattatttttctt
tcgtgGTTTATTGAACAAAATAGGTTGGAATTGtgctttatatatttttt
taaattgtagaAGGCCTAAATAGGGTAATTTTGTAACATCAATTTCAACT
CTTTCATAATATTGGcatcttttttatatatgttaCATTTTTACATGATT
GACATTAAAGAGGTTTCAGAGATGAATTTTATTTCTTCAGAAGGAAAGTA
ACGTACTAAAGCACTAGTTTTCATGTTAATAAGTCAACAGTACTGGGTCA
TTTAGTGGtaataaagtaacaaaattgtttttttttcgcaatttttccaa
gttttgttacaaatttatcatgtttttatcgACTTTTAAATAGGCATTGG
ATGGTTTTAACTAGCCATAGGGTCAATGAATGGAAATAGTGACCCTCCAT
GTCCTCAAAAGAGTCTCAATTTGATAAATATGTAACAGGAATTCAAGAGT
ACAAACAAACATGAGTCTAAACTTGTAGTATANNNNNNNNNNNNNNNNNT
CAATTTGATAAATATGTAACAGGAATTCAAGAGTACAAACAAACATAAGT
CTAAAATTGTAGTATAGACACCCTGTTTGTTACAGATTTACCATTTTAAA
ACAGACAAAGAAAACATGACAATACAAAAGACATGATATTGGTCTTAGGG
TCAATTTAGATTAAAGAAATATCCTTCTTGTCACCAGTTAAATTTCTTTA
ATGGTCTTTCAACAACAAGTGCGCGCCTTGTCCGGTACTAAACAAGTTTG
TGGTGTTACATTTTTACCCAAATGCAGcgttttttgaaattaaagacATA
TTTTTAAAGGTCATAAGCCTCGTTAATATTTCCCCCAAAGGAGGGCCTTT
TTTGGTGAGATTGACatgattaaagtgactttaggTACTTTTTTTGCTAT
TTGCTAATACTGTTactattttatctttttcttagcCGTAGATGTAGACC
CTGTTACACTATTGCCCtctattgattttttattttcttatggATAAAAC
TAACCATTTGAAGAAAATCGAACAATGAAAACAACATTGAACTTctttaa
taataaaaaagttacaattgTTACATTTTTACCAATAGCAGGCCCGGGTA
AGGTATATATAATGGTCAGTAGTGTAAACCCTTCAATTCAATTCATCATT
AAATACTACAATGCTGCTTTCCCTCCTAAGCCAACTAATGAATATACTCt
ttttttacagccaaaaaTATGACATTTTTCAACTATACCTTTTCTTCTAT
TAAATCGTCTCAAATGGTTTATCAGTTTATCTTGTGTATTTCACGAATTT
TTACCAACAGattcatttctttcaatttttaggATTGATATTGCATTCAA
TTTATACCCAAAAACATGTGTTGCTATGGACGGAAAAGTTTTCTCGAAAT
GGAAGCGTTATCAACAAAGTTGATTAAAATGGCTGGAAAAGAAGCATTGg
acccaaaaaataagaacttaAAGAAGCTAGCTTTATagtaatttgttttg
aaataataCTGATACGCCGCTAAACATTATGTCAATGGGTAAACCATCAT
GATTTAGAATGTAAAAATTTAGGTTCTTATTTCTTACTAAAATTCTTACT
TACaatgtacactttttttataagaaccagtaaatttttgatgagcCTCG
GCTATTCTTATTTGTTTtacactttgagcctcaaattgttcttatcctgt
ttttatttataggataaaattgagttatttaggcttcatacccaattttt
actgcTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014101-exon-sc0000181-1491911889:35398..35447 | TCONS_00014101-exon-sc0000181-1491911889:35398..35447 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1510915933:35398..35447 | TCONS_00014101-exon-sc0000181-1510915933:35398..35447 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1575043694:35398..35447 | TCONS_00014101-exon-sc0000181-1575043694:35398..35447 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1491911889:35751..35923 | TCONS_00014101-exon-sc0000181-1491911889:35751..35923 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1510915933:35751..35923 | TCONS_00014101-exon-sc0000181-1510915933:35751..35923 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1575043694:35751..35923 | TCONS_00014101-exon-sc0000181-1575043694:35751..35923 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1491911889:38230..38655 | TCONS_00014101-exon-sc0000181-1491911889:38230..38655 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1510915933:38230..38655 | TCONS_00014101-exon-sc0000181-1510915933:38230..38655 | Clytia hemisphaerica | exon |
| TCONS_00014101-exon-sc0000181-1575043694:38230..38655 | TCONS_00014101-exon-sc0000181-1575043694:38230..38655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000181 | supercontig | sc0000181:35398..38655 + |
Blast
The following BLAST results are available for this feature:
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