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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014045 ID=TCONS_00014045|Name=TCONS_00014045|organism=Clytia hemisphaerica|type=transcript|length=1118bp
TTTGGATCAAAGAAAGTTACAGAGCCTTGAAGTtgtcAACAAAATGTCTA
CATCCAACAAGGTTACCAAAGCCAAAAAACTACACCCTGTCTTCGTTACA
TGCCAAAAAAGACCTACCACCAAGATTACCACTTAACTATCATCACCACA
ACCTATGGAAAAGGCTATTTACATCTCCCCCCATCCATCTCTTCTACTTC
TTTTGCTGCCGCCAAACCTTTTTCAATCATTGCCACTAAGCCACTCAATT
TCCTCCCCGGAAAAAAATTGTACCAAAAGAAAAATGTATGCCTCTTCCAA
CGCCACTATCACAACTAAACCTGCCAAATGAATACCCGCTACCACCAAAC
CTAAACCATTTCATCAAGCTTTTAAAATTCCAACATCCACCATCCCCAAT
GCAACCAAGCCGTCTGCCACCTGTTAATCCTCTCCTACACCGACCATAAC
ACCAACAAAGCCACCAAAGAAAAAGACGATGCACGAGATATCGCCCTATT
TAAAGAAACACTTTCTTGTCAACTTTTAatacacaaaaacaaacacaagA
GCGAAAGGCTAAATGGCTAAAAGTGTCTTCAAAAATGAATGAGCTTTTTC
TTGGTGATGAAATTTATGAAATCAGGACAGTCAAGGACAGATTAGGCAGA
TCGTTAAgcgttcaaaaagaaaaataatgaatgCAGAGCTCAAGGGATCT
GGGGTTGAGGTCGACTACAGCGAGAAAGATAATCTCCTCCAAGATCTCCT
TGACTGAGAAAAGACATCCTTCGACATTAAAGAGCAAAGAGACGAAGAGA
CGAGAAAGATGAAAGAATCATAACAACAAGGCTTGGAAATGAGAAAGAGA
GCTTTGGAATCTATGTCAGAGACGCAAGAAAGGTTGCAGAAAccaaaaaa
aagttcgaaagcAAAGATTTCAATCCAAACAGTAAACAGGTTCCGGTAGA
GCAGTGCATCAGAGGAACGGACAGAGCTTTGATTAGAAGTACATAAGCGC
TACAAAATTCAgtaagatttattttttaaacaaaactctTTCAATATGGC
AAAAACATTGTGGCATgagcaatatatttttcaattaaccAACAACGagc
aattattttattttttga Run BLAST on NCBI transcript from alignment at sc0000180:266993..270021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014045 ID=TCONS_00014045|Name=TCONS_00014045|organism=Clytia hemisphaerica|type=transcript|length=3029bp|location=Sequence derived from alignment at sc0000180:266993..270021+ (Clytia hemisphaerica)
TTTGGATCAAAGAAAGTTACAGAGCCTTGAAGTGTAAGTACTTATGAAGT
TGTTTATCAACAGAAGATGTAGTGTTgactataattttttttcttcatac
atCAAAGGGCACATAAttgtaagttttatttttcatttttagtgtcAACA
AAATGTCTACATCCAACAAGGTTACCAAAGCCAAAAAACTACACCCTGTC
TTCGTTACATGCCAAAAAAGACCTACCACCAAGATTACCACTTAACTATC
ATCACCACAACCTATGGAAAAGGCTATTTACATCTCCCCCCATCCATCTC
TTCTACTTCTTTTGCTGCCGCCAAACCTTTTTCAATCATTGCCACTAAGC
CACTCAATTTCCTCCCCGGAAAAAAATTGTACCAAAAGAAAAATGTATGC
CTCTTCCAACGCCACTATCACAACTAAACCTGCCAAATGAATACCCGCTA
CCACCAAACCTAAACCATTTCATCAAGCTTTTAAAATTCCAACATCCACC
ATCCCCAATGCAACCAAGCCGTCTGCCACCTGTTAATCCTCTCCTACACC
GACCATAACACCAACAAAGCCACCAAAGAAAAAGACGATGCACGAGATAT
CGCCCTATTTAAAGAAACACTTTCTTGTCAACTTTTAatacacaaaaaca
aacacaagAGCGAAAGGCTAAATGGCTAAAAGTGTCTTCAAAAATGAATG
AGCTTTTTCTTGGTGATGAAATTTATGAAATCAGGACAGTCAAGGACAGA
TTAGGCAGATCGTTAAgcgttcaaaaagaaaaataatgaatgCAGAGCTC
AAGGGATCTGGGGTTGAGGTCGACTACAGCGAGAAAGATAATCTCCTCCA
AGATCTCCTTGACTGAGAAAAGACATCCTTCGACATTAAAGAGCAAAGAG
ACGAAGAGACGAGAAAGATGAAAGAATCATAACAACAAGGCTTGGAAATG
AGAAAGAGAGCTTTGGAATCTATGTCAGAGACGCAAGAAAGGTTGCAGAA
AccaaaaaaaagttcgaaagcAAAGGTCAGATAAAAAGAAGATCGACAGT
AAAGGTATTGTTGACTGCATCAAGGAAAAATGGTCTTCCCATAAGATAGA
TAAGGAAAAGGAGCTTGCTTTGCGAATGAGGGAAGTTGCTTTAAGGGAAA
CAATAAGTGGGAGTTGGAAACTTTTGATAACATCAAAGCAAAAAACCATT
GACACGCAAAAGGCCAGGTTTGCTCAACAAGAGAAGCATACATTGAAAGA
cttctgaaagaaaaagaatcatGGGGTTTTTTTATAgcatttgaaacatt
tttcttcaAGAAGTCTTTCACTGTATGCTTTTTGTGTTATATTGCAATCA
gtgtggaaaattttaaaaataagcaAGCGCCAAGTTGTCAACATAAATGC
GCCGGAAAATTACAGTACGAGTGTAGAGACAAGCTCTGGTTCGAACAGTC
TAGAATCCGCGCTCTTCTCCTAAGAAAAACCCTTTGCTTGGAGTCGAGTT
ACGGGTTTATGGAGAATTGGTATCGGCTTAAGAACTCCCAATGAGCCCCG
GTTGTGTTAGTTTTAGTCAGACGGAGACGCCATTctgttttcagaggaat
ttttcgatatctctacaggaactagcagtaagttttattttctttgaata
tgTTGTTAGGGGTTTTTGATTTCCCAGAGATCACAaacaagcgaggggtc
cctttaatACACCTTTTGACAGTGCAAGGTTTTTTGCTTTGATGCAATCG
AATTTTTCCAATTCCCACTCTCTgtttcccttaaggtaataatCCTCTCT
AAGCATTTTCATAATCAAGCTAAAgttaaaacctctaattaataTCCTTT
CCTGAATCTGATCTTATCATTTTAGAAAGCAAGCATTTTTGTTTGATTCA
CTTCAAGAATACCCTTCTTGTCAGCTTTTTCTATCCGATTTTTTGCCTAT
TACAAAGGGAGACTTTTTTGGTTTGACGAAATATGACGAAATGaatgaaa
tgatgaaaaaaaaattatccccctggatatccacctTTTTGCTGATATCA
TACACCTTCCAGATTTTCGAAATCCTCAAAACTGGAAATGCTGATTTTTT
CACGTGTACTAAAATTTCGTGTTTTAAAACTTTAAGCAAAGTGAACTAAA
GATGTTTGAATATCCAGGAGTCTTCAATATTCATTATATATAAACAACTT
CTACTTTTGGAACTAAAGAACTGCACACCAAAATAATGTTATTAGGCGAA
AGTAAagaaatgtagtgtttccgggatgcgggtgaaggaataaagctctc
atgcggccggccggaaatgCGGCAAGCcgtgaatactaatgtatcaacta
ctattGAACGAAGCTTGATTTATAAGCGGGAATATCTAatcaaacgacgt
ttgatagcttgaacagttaacttgattttctttatcattaactatataga
tgaacccatagtctacGGCCGGATCAGAAAATGGCTGCTTTtcagaaaca
ctacattttttttattttcgccttattatatagcctatactagacgtcac
ccgcgtttttacgcaattaacgtctattccaccttgcgactttttcgaat
gttttgagcccgggttttcgggctctaaacattcgattttttgacgccAC
Ttctaactttcgaagctcctgcagtagcaaaaaaatcgaatttgcgtcaa
aacacttgaaaggtttctattttccaaaaatcgtcaaagtggaactcgtt
aagaaacgagatgaaaaatcccggtttttagtgaggtgcttgCTACTTAT
TATAGAGCATCGTTATTTCTTCTACAGATTTCAATCCAAACAGTAAACAG
GTTCCGGTAGAGCAGTGCATCAGAGGAACGGACAGAGCTTTGATTAGAAG
TACATAAGCGCTACAAAATTCAgtaagatttattttttaaacaaaactct
TTCAATATGGCAAAAACATTGTGGCATgagcaatatatttttcaattaac
cAACAACGagcaattattttattttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014045-exon-sc0000180-1491911889:266993..267025 | TCONS_00014045-exon-sc0000180-1491911889:266993..267025 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1510915933:266993..267025 | TCONS_00014045-exon-sc0000180-1510915933:266993..267025 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1575043694:266993..267025 | TCONS_00014045-exon-sc0000180-1575043694:266993..267025 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1491911889:267135..268017 | TCONS_00014045-exon-sc0000180-1491911889:267135..268017 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1510915933:267135..268017 | TCONS_00014045-exon-sc0000180-1510915933:267135..268017 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1575043694:267135..268017 | TCONS_00014045-exon-sc0000180-1575043694:267135..268017 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1491911889:269820..270021 | TCONS_00014045-exon-sc0000180-1491911889:269820..270021 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1510915933:269820..270021 | TCONS_00014045-exon-sc0000180-1510915933:269820..270021 | Clytia hemisphaerica | exon |
| TCONS_00014045-exon-sc0000180-1575043694:269820..270021 | TCONS_00014045-exon-sc0000180-1575043694:269820..270021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:266993..270021 + |
Blast
The following BLAST results are available for this feature:
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