TCONS_00014010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014010
Unique NameTCONS_00014010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014010 ID=TCONS_00014010|Name=TCONS_00014010|organism=Clytia hemisphaerica|type=transcript|length=506bp
GTAGAGTTATATTGACTGTTTCCAACTCTTTGACCATTAGATACTTGATC
TTTACATTAAGAATCCAATTGCTGAATTCTTTTCCATTGATTTCCTTGTC
AGTGTTGTTTTCCTGCAATTCAGAGAAAGCTTGAAGTCCCTTTGTTAACC
AATGGCGACAATGGAAGGATTGAAGCTCACGTGTGAACCAATGGGCTGGC
GAATCCTTCTTCAAATTATCCAAACATTTCTTGAGAGTGTTTATGTCAAC
AACGTAATCGAGGAGATGTACGGTTGAATCCTTCTTCGTGTATTGGTGTG
ATTGAAAAACTGGGGGAATAAATATAGGATCGTGGCGATTGGTGTCGAat
aatgctgaatcagcatactCTCTTAAGAGAAGCTGATCAGCGGCAAGAAT
AGGGTCGTTAAATAACTGACCATTTCCGAGGTTGAACTTTCGGTTTTGTT
TGTCGATGGTGGATTGTGCATTTGTCAATATTTGATGATATAATGACGTT
CGCGGG
Run BLAST on NCBI

protein sequence of TCONS_00014010-protein

>TCONS_00014010-protein ID=TCONS_00014010-protein|Name=TCONS_00014010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
PRTSLYHQILTNAQSTIDKQNRKFNLGNGQLFNDPILAADQLLLREYADS
ALFDTNRHDPIFIPPVFQSHQYTKKDSTVHLLDYVVDINTLKKCLDNLKK
DSPAHWFTRELQSFHCRHWLTKGLQAFSELQENNTDKEINGKEFSNWILN
VKIKYLMVKELETVNITL
Run BLAST on NCBI

transcript from alignment at sc0000175:72673..73178

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014010 ID=TCONS_00014010|Name=TCONS_00014010|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000175:72673..73178 (Clytia hemisphaerica)
CCCGCGAACGTCATTATATCATCAAATATTGACAAATGCACAATCCACCA
TCGACAAACAAAACCGAAAGTTCAACCTCGGAAATGGTCAGTTATTTAAC
GACCCTATTCTTGCCGCTGATCAGCTTCTCTTAAGAGagtatgctgattc
agcattatTCGACACCAATCGCCACGATCCTATATTTATTCCCCCAGTTT
TTCAATCACACCAATACACGAAGAAGGATTCAACCGTACATCTCCTCGAT
TACGTTGTTGACATAAACACTCTCAAGAAATGTTTGGATAATTTGAAGAA
GGATTCGCCAGCCCATTGGTTCACACGTGAGCTTCAATCCTTCCATTGTC
GCCATTGGTTAACAAAGGGACTTCAAGCTTTCTCTGAATTGCAGGAAAAC
AACACTGACAAGGAAATCAATGGAAAAGAATTCAGCAATTGGATTCTTAA
TGTAAAGATCAAGTATCTAATGGTCAAAGAGTTGGAAACAGTCAATATAA
CTCTAC

Coding sequence (CDS) from alignment at sc0000175:72673..73178

>TCONS_00014010 ID=TCONS_00014010|Name=TCONS_00014010|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000175:72673..73178 (Clytia hemisphaerica)
CCGCGAACGTCATTATATCATCAAATATTGACAAATGCACAATCCACCAT
CGACAAACAAAACCGAAAGTTCAACCTCGGAAATGGTCAGTTATTTAACG
ACCCTATTCTTGCCGCTGATCAGCTTCTCTTAAGAGagtatgctgattca
gcattatTCGACACCAATCGCCACGATCCTATATTTATTCCCCCAGTTTT
TCAATCACACCAATACACGAAGAAGGATTCAACCGTACATCTCCTCGATT
ACGTTGTTGACATAAACACTCTCAAGAAATGTTTGGATAATTTGAAGAAG
GATTCGCCAGCCCATTGGTTCACACGTGAGCTTCAATCCTTCCATTGTCG
CCATTGGTTAACAAAGGGACTTCAAGCTTTCTCTGAATTGCAGGAAAACA
ACACTGACAAGGAAATCAATGGAAAAGAATTCAGCAATTGGATTCTTAAT
GTAAAGATCAAGTATCTAATGGTCAAAGAGTTGGAAACAGTCAATATAAC
TCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007829XLOC_007829Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014010-proteinTCONS_00014010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014010-exon-sc0000175-1491911889:72673..73178TCONS_00014010-exon-sc0000175-1491911889:72673..73178Clytia hemisphaericaexon
TCONS_00014010-exon-sc0000175-1510915933:72673..73178TCONS_00014010-exon-sc0000175-1510915933:72673..73178Clytia hemisphaericaexon
TCONS_00014010-exon-sc0000175-1575043694:72673..73178TCONS_00014010-exon-sc0000175-1575043694:72673..73178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000175supercontigsc0000175:72673..73178 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.721295	0.84749	0.573049	1.29344	0	0.75887	0	0.263779	1.12166	0.209733	0.292139	1.08971	0.531719	0.643387	0.542239	1.87085	0	0	0.507738	0.30313	1.58076	1.38046	0.398217	0.741239	1.96149	1.52144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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