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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013997 ID=TCONS_00013997|Name=TCONS_00013997|organism=Clytia hemisphaerica|type=transcript|length=1099bp
TCCAACCGCATACCTCCGTTCATCAGGCACCTGAGTGTATTGGCTACTTC
ACTCTTCCATATTTGGTCAAAGCACAAGCCAAGAAATTATACGCGTGTGA
AATCAACCCTGACGCATGCGCAGCTCTTAAAAAGAATCTGGGTTTGAATC
ACGTGGACGAAAGTCGGTACCAGATCCTTCAAGGTGATAATAGAGAGGTA
TGTCCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATCCCAAGCTC
TTCACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGCGAAGGGCG
GGTGGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACGCTCTGGAT
AGTGGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACGAATGCAGG
AGAATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGTGCCGTGTC
GCGATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATATAGAGTTG
GAAACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTAGATACAGA
AGTTGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAAATCTAAAG
GTATGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACTTGGAAAGG
GAAAATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTCTCAAAGCA
TAAGTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTCGAAATTGA
AATCCTAtttgccgccattatggaaagtaacattacgtcatataGAGTTT
GTAAAATCTTATGCGCCCCATGTTGATCATttagtttttgatattgaatg
tCGACCAATCAGTGATCAGCTATTGTGAGCGTAAAGACCACGTGGTTTTA
tctgttGTAAAATTTCACTTCGGAGCAAAACGGTATCATATTGTGTTCTG
TTGTAGTTTTATTAATTGGGCccttccattttatatccatacagggaggg
gtggacgaacatttaaATGGGGGTTAAAAATGTATTCTAATAATTTCATG
GGGTAAAAGACCGGTTTTAGTCTAATTTAAGGTCTAATTTaattttcca Run BLAST on NCBI transcript from alignment at sc0000175:402976..406135- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013997 ID=TCONS_00013997|Name=TCONS_00013997|organism=Clytia hemisphaerica|type=transcript|length=3160bp|location=Sequence derived from alignment at sc0000175:402976..406135- (Clytia hemisphaerica)
TCCAACCGCATACCTCCGTTCATCAGGCACCTGAGTGTAGGTAGTAAAAC
AAATGTGAGGACAAATGAAGATACTCAGGAAACTGACTTATACCTTCTTT
ACTATAATGTTCGTTCTCTCTAATTCGATCTTCAAGGGATCAAAATTTTT
CTTTTTATTAGAAAAAGATTGGAAATATGGAGAGTATTTTATACAACTCT
TCAACTGAAAGGAGCGAGATTTTAGTTCGAATTACAGAAAGATTTGAATA
ATAGATGTTCGAATTAAGGAGAGCTGACTATGTATTACCGTGATTTTTTT
CTTCGTTTTCCTCACTTTAGGTATTGGCTACTTCACTCTTCCATATTTGG
TCAAAGCACAAGCCAAGAAATTATACGCGTGTGAAATCAACCCTGACGCA
TGCGCAGCTCTTAAAAAGAATCTGGGTTTGAATCACGTGGACGAAAGTCG
GTACCAGATCCTTCAAGGTGATAATAGAGAGGTCAGTAACGTTCTTTTTT
GGAACTACCTCGGAGGTCCTTTAAATTAACCGATGTTAGTCCGTTCGTTC
GTCTGTTATTAGTTTTTCTCGGGATCGGCTCGTTAGTTTTTTCTGATTTT
TTTGCACAGTGATACAAAATGGTGATTCCCAAAAAAGTGACGGAGCCCGA
TTTTCGAAAAAAAGAATATGCCGGAAATATGCCGGTAAAACCGGTTTTTT
GGCATTGTCTCGAGATTTCATCGTGATTTTTTGCACAAAGATGCATATTA
GCAATGTCCAACTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGC
TTGTTTTAAAGAAAAAAATTAGCAAGTTTACATACATCATTTCTTTGGAT
AAGAAGGTCTATCAGTTACCATAAGCGGATTAATTTTTGCGAATTTTGAA
AATGTTCCCTAAAATTTAATTAGTCATCGTGAAAAATTTTAGATACGAAT
TTCGACCCTTAGGAAAATGGAAAATTTGGTGAAAAATAGTCCGATTTGCG
AATTTTTGTCCACGTCAAAAATTTAGATTCTCAATTTCGCGAAAAAAGGT
AATGTGAAAATTAATCCAGTTAAAGTACTCTGAAATTACAATAGCAAGTT
TCTACATCTACGTTATGACGTTCATGACGGAGCTTTGACTCAAACGAATT
TAGAGCAATCCGTTCTTTTAGCGTCATCTTTAGTTATCTAAACCTTCCAG
ACGCAAAAATTTTCATCCGACACGCTAAAGCTCTGAAGGTTGAGAAAATC
CTCAACATCTGGAAGGTTTAGATTACGGAATTTTGCAGCGGGAGGCCTGT
TAACCCAGCCCTGGTTTTCGCGGATGGTAGGTCCAACTGAAATATTTTCA
GGTTTACACGCGAGGGCTGTTGAACCCGGCTGAAGATGCGGCATATCAAA
GGCCGACTATCATTTCCTCTCCGATGGGAAGTTGACACCTATCCTTTAGA
GCTTTAGCGTGGGCGGCCGCCAATCCGCCATCAGAATATCAGATAACATT
TTTAGCCTACATGGCTTACGCATAGATAAAGGAAGCGAAAATACATTTGA
TATTTTAAAAGGGCGCTCTTCTATTCGATACGCTCCCTTTGGTGAAAAAT
CCAATTTCCCTTAAAAATCGAATGGGAGAGTGCCAACTGTAGTTCTTTTC
GTGATTGGTCTTGCTTTTAAATTTTCCAAAATTATACCAATAGACCTTTT
CATAGATTACGTCACGAACATCACTTGCCTCGTATTCAAACAAATACCAT
GGTGATTATGTCTCTTGAGACATTAAATAATTTTTTTATGATTAGGAAGT
AGTTTTAATAAAATCCGCTGGGAGTTAATCACCGTGGCATTAATTTCAAA
ACGAGGCAAGTGATGTTCGTAACGTAGTTTATGAAAAGGTCTACATGTTT
TTTCTTTTATAAGCATAACGTTTATAAGCATATGCAGGCTCAGTTTTTGG
TACCTAAACAATGGCTCTATTGTTTGAGAACAATAGAATGCTAAGCATAA
TGCCAGCCTGGAATTGGGACAGATACTTGCTTATAAAAAAAACATGTATT
AACCTAATTCTGATTGCGTCTTGCTAAATCTTCCAACACCAAAACTTTCC
CTTTTAAATCAAGCTCAGCCAAAACTTTACAAAAGATGTATTTTCTTATT
CTAGGTATGTCCAAAGAACATTGCAGATCGTGTTAACCTTGGTCTTATCC
CAAGCTCTTCACTCTCATGGGCGACCGCCTGTCACGCCCTTAATCAAGCG
AAGGGCGGGTGGCTACATATTCATGAGAATGTCGATAGTGGTGCAAACGC
TCTGGATAGTGGTACAGGTAGTGATGCTATTCTTCAAGATCATATTACGA
ATGCAGGAGAATTTGAGATATGTCAACATGTTGTGAAAACAGAATTTGTG
CCGTGTCGCGATGGACTTGACGTAACGGATTCGGAACCTCCTGAAGATAT
AGAGTTGGAAACGTCGACATTGTCTGAGAAGAATAAAGCAGGACCCTTAG
ATACAGAAGTTGTCAACAAAGAAAGGGATTTATCGATAACGTATGAAAAA
TCTAAAGGTATGAGCGTAGATAATTATGTGTTTCCTGAATGCAACGACTT
GGAAAGGGAAAATCGAAACTTAGTACGAGATTGCTACAAAGGAAAGCTCT
CAAAGCATAAGTGTGTGGTATGGCAGGCATTTGTCGATGACATGTTGTCG
AAATTGAAATCCTATTTGCCGCCATTATGGAAAGTAACATTACGTCATAT
AGAGTTTGTAAAATCTTATGCGCCCCATGTTGATCATTTAGTTTTTGATA
TTGAATGTCGACCAATCAGTGATCAGCTATTGTGAGCGTAAAGACCACGT
GGTTTTATCTGTTGTTTTTATTTTGCAGATGGAGTACAGAATGTTGAACG
ATTAGTGATTAATACCCATATTAAAATTCTTTGATCTAAATCGATCTTCT
GCCCGAGCAGTCCCTAGGTAAAATTTCACTTCGGAGCAAAACGGTATCAT
ATTGTGTTCTGTTGTAGTTTTATTAATTGGGCCCTTCCATTTTATATCCA
TACAGGGAGGGGTGGACGAACATTTAAATGGGGGTTAAAAATGTATTCTA
ATAATTTCATGGGGTAAAAGACCGGTTTTAGTCTAATTTAAGGTCTAATT
TAATTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013997-exon-sc0000175-1575043694:406100..406135 | TCONS_00013997-exon-sc0000175-1575043694:406100..406135 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1575043694:405655..405815 | TCONS_00013997-exon-sc0000175-1575043694:405655..405815 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1575043694:403273..403981 | TCONS_00013997-exon-sc0000175-1575043694:403273..403981 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1575043694:402976..403168 | TCONS_00013997-exon-sc0000175-1575043694:402976..403168 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1510915933:406100..406135 | TCONS_00013997-exon-sc0000175-1510915933:406100..406135 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1510915933:405655..405815 | TCONS_00013997-exon-sc0000175-1510915933:405655..405815 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1510915933:403273..403981 | TCONS_00013997-exon-sc0000175-1510915933:403273..403981 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1510915933:402976..403168 | TCONS_00013997-exon-sc0000175-1510915933:402976..403168 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1491911889:406100..406135 | TCONS_00013997-exon-sc0000175-1491911889:406100..406135 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1491911889:405655..405815 | TCONS_00013997-exon-sc0000175-1491911889:405655..405815 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1491911889:403273..403981 | TCONS_00013997-exon-sc0000175-1491911889:403273..403981 | Clytia hemisphaerica | exon |
| TCONS_00013997-exon-sc0000175-1491911889:402976..403168 | TCONS_00013997-exon-sc0000175-1491911889:402976..403168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000175 | supercontig | sc0000175:402976..406135 - |
Blast
BLAST of TCONS_00013997 vs. Swiss-Prot (Human)
Match: TYW2 (tRNA wybutosine-synthesizing protein 2 homolog OS=Homo sapiens GN=TRMT12 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-26 Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 3
Query: 39 IGYFTLPYLVKAQAKKLYACEINPDACAALKKNLGLNHVDESRYQILQGDNREVCPKNIADRVNLGLIPSSSLSWATACHALNQAKGGWLHIHENVDSGANALDSGTGSDAILQDH 386
IGYFTLP+LV A A ++ACE NP A AL+ NL +N V + R QI GDNR++ NIADRV LGLIPSS W AC L Q GG LHIH+NV+S G + ++H
Sbjct: 245 IGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVAD-RCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEH 359
The following BLAST results are available for this feature:
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