|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013991 ID=TCONS_00013991|Name=TCONS_00013991|organism=Clytia hemisphaerica|type=transcript|length=1951bpRun BLAST on NCBI protein sequence of TCONS_00013991-protein >TCONS_00013991-protein ID=TCONS_00013991-protein|Name=TCONS_00013991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MANFGYDKIVSTLRNNYREGNLYEYGKRLEQLQALYRLVEENEGELLEALRun BLAST on NCBI transcript from alignment at sc0000175:264186..273710- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013991 ID=TCONS_00013991|Name=TCONS_00013991|organism=Clytia hemisphaerica|type=transcript|length=9525bp|location=Sequence derived from alignment at sc0000175:264186..273710- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000175:264186..273710- >TCONS_00013991 ID=TCONS_00013991|Name=TCONS_00013991|organism=Clytia hemisphaerica|type=CDS|length=16401bp|location=Sequence derived from alignment at sc0000175:264186..273710- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013991 vs. Swiss-Prot (Human)
Match: AL3A2 (Fatty aldehyde dehydrogenase OS=Homo sapiens GN=ALDH3A2 PE=1 SV=1) HSP 1 Score: 447.203 bits (1149), Expect = 6.203e-150 Identity = 212/440 (48.18%), Postives = 306/440 (69.55%), Query Frame = 1
Query: 61 VSTLRNNYREGNLYEYGKRLEQLQALYRLVEENEGELLEALHKDLGKCKTEGRI--METMIVMRECGETIQYLKTWMKPESVKPDLLNSLYACKIIREPLGVVLIMGAWNYPVQLTLLPLIGALAAGNCAILKPSELSPHSAQVMTKLVQKYMDPDFVRIVNGAIPETTELLKQRFDKIFFTGSPSVGKIIMKAASEYLTPVDLELGGKCPAIVDESCNFDAIGNRIAWAKLANAGQTCLAVDYIICVGNCRDKLIESLKKSIESFYGEDQQESDSYGRILNKRHVARLQKLIDPSKVVYGNKVDEDDLYISPTIMKDVSPDDPVMQDEIFGPILPVLTVKNIDEAIRYVQEREKPLALYIFSNVQKTIDRILKMTSSGSVCVNDAVVQGAVPTLPFGGVGNSGMGAYHGHFSYDAFSHRKACIIKDQRLEFLNKIRYPP 1374
V +R + G RL+QL+AL R+V+E E ++L A+ DL CK+E + E + V+ E ++ L W+ + VK ++L L I +PLGVVLI+GAWNYP LT+ PLIGA+AAGN I+KPSELS ++A+++ KL+ +Y+D D ++NG + ETTELLKQRFD IF+TG+ +VGKI+M+AA+++LTPV LELGGK P +D+ C+ D + RI W K N GQTC+A DYI+C + +++++ +K++++ FYGE+ +ES Y RI+N RH R+ L++ K+ +G + DE YI+PT++ DV P VMQ+EIFGPILP++ VKN+DEAI ++ EREKPLALY+FS+ K I R++ TSSG V ND ++ + + PFGGVG+SGMGAYHG S+D FSH++ C++K + E NK+RYPP
Sbjct: 5 VRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADL--CKSEFNVYSQEVITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYIQPQPLGVVLIIGAWNYPFVLTIQPLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQRFDHIFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMNCGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLEGQKIAFGGETDEATRYIAPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINEREKPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHFTLNSFPFGGVGSSGMGAYHGKHSFDTFSHQRPCLLKSLKREGANKLRYPP 442 The following BLAST results are available for this feature:
BLAST of TCONS_00013991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.