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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013985 ID=TCONS_00013985|Name=TCONS_00013985|organism=Clytia hemisphaerica|type=transcript|length=2356bpRun BLAST on NCBI transcript from alignment at sc0000175:162898..189549- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013985 ID=TCONS_00013985|Name=TCONS_00013985|organism=Clytia hemisphaerica|type=transcript|length=26652bp|location=Sequence derived from alignment at sc0000175:162898..189549- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013985 vs. Swiss-Prot (Human)
Match: KI21A (Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 9.160e-63 Identity = 144/400 (36.00%), Postives = 244/400 (61.00%), Query Frame = 2
Query: 2 NKIKETEDERDKVLKNIGTVDVVAKEKSDEVRKRYEKKLQTMQKELSKLQNAKREHQRLQKTKEQNEQQLKGLRNEMNDMKKMKVKLMRQMRDEVARNKKMESKLNRQMESVLKENRKKEVELKRMKDEKKQRDLVLKRKQEELKAMRKQAKPVSGNVAARRGR--PAXXXXXXXXXXXXXXXETFVVDERTKQGMVTPTNKRKNIASPG----------RGLRSPA-VSKKAKQKWEVLDRKITELTIRMKNVAQMENDMERWLADRERVSKQLEGVRKRKEGIEKNANNQDENVLRELQNQYEGLEAHLDYIQENITESQGTIMXXXXXX---XXXNPNEIIKACTLSETKYLLEHFYSKSIETAQELANKDAAYKEIQIKLEAMEQHCEVQQQLLQH 1153
+KI++T+ ERD+VL+N+G+V+ ++EK+ +VR YEKKLQ M KEL +LQ A++EH RL K + Q E+QLK L+ ++ +MKK KV+LM+QM++E + + ES+ NR++ + K+ RK++ +L+ ++ +K+ +++VL+RK EE+ A+R+Q +P+S VA + R ++ ++ ET +Q M P + + + +P +GL +SK A+ KW++L+R++T++ ++ ++ ME DM R L RE ++K+ E + KR+E I K D+NV + + E L A++DYI ++I++ Q IM +EE E L+ +I ACTL+E +YLL+HF S I + A K+A K ++ +L+ E Q QLL H
Sbjct: 687 HKIRDTQLERDQVLQNLGSVESYSEEKAKKVRSEYEKKLQAMNKELQRLQAAQKEHARLLKNQSQYEKQLKKLQQDVMEMKKTKVRLMKQMKEEQEKARLTESRRNREIAQLKKDQRKRDHQLRLLEAQKRNQEVVLRRKTEEVTALRRQVRPMSDKVAGKVTRKLSSSDAPAQDTGSSAAAVETDASRTGAQQKMRIPVARVQALPTPATNGNRKKYQRKGLTGRVFISKTARMKWQLLERRVTDIIMQKMTISNMEADMNRLLKQREELTKRREKLSKRREKIVKENGEGDKNVAN-INEEMESLTANIDYINDSISDCQANIMQMEEAKEEGETLDVTAVINACTLTEARYLLDHFLSMGINKGLQAAQKEAQIKVLEGRLKQTEITSATQNQLLFH 1085 HSP 2 Score: 159.458 bits (402), Expect = 6.105e-40 Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = 2
Query: 1811 GQILPSKASPG-KPEVLTCKYTATGHSSAILSLDVQDYLMMTGSKDRTAKVWDLNTNEEIASFAQHKRDVNVVKFVPNSRLALTVSHTTVKVWDLRQQA-VVKTLSGSLLQSITDAT----------------ISDIGINSAGSVIYLAYGNSVKMIDMKTYSTLGKLTGHTGAVTCLLVANTGHNHDNVITGSKDHYIK 2356
G I P AS G + L C + A GH+ A+L +D D L+ TGSKDRT KVW+L T +EI S H +V VK+ + L TVS + +KVWD+R A ++TL+ S ++ DA I+ I +N G+ +Y A GN+V+M D+K + + GKLTGH G V CL V D +ITGSKDHYIK
Sbjct: 1321 GIINPFPASKGIRAFPLQCIHIAEGHTKAVLCVDSTDDLLFTGSKDRTCKVWNLVTGQEIMSLGGHPNNVVSVKYCNYTSLVFTVSTSYIKVWDIRDSAKCIRTLTSSGQVTLGDACSASTSRTVAIPSGENQINQIALNPTGTFLYAASGNAVRMWDLKRFQSTGKLTGHLGPVMCLTVDQISSGQDLIITGSKDHYIK 1520 The following BLAST results are available for this feature:
BLAST of TCONS_00013985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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